Sed0019154 (gene) Chayote v1

Overview


Name	Sed0019154
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG06: 25633121 .. 25633516 (+)
RNA-Seq Expression	Sed0019154
Synteny	Sed0019154

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAATTGAGTGACAAAGTTGATGGATTAAGAAAAGAATATTTGGAAAAGGAGTGTCTAACCAAAGGCATATACTATTGGGAATTCACAAAGCATCATGAATGGCTTGCGTTTGTGCTATCTAAGAGGATATGGGGAGCTAAGAAGAAGAAAAGCAGCAACATTGGAGCTCACATGAAGAGGGTAACGAGGTTCATCGAGTTTCTTCAAGAAAAGGAGATTCACATTAGTTGTTTAACGCCTGCATGCTTGGAATATCTTATCAAAGAGTGGCAACTTCATTTGCTTATGCACAATGACCTTTTGTCCATCAAGGCCAACTTTGATGCTAACCTAAGGAAATTGTTGTTTCCCAATTCTCTCAAAACCACTCACCCTTCAACACTATCTTAA

mRNA sequence

ATGAAGCAATTGAGTGACAAAGTTGATGGATTAAGAAAAGAATATTTGGAAAAGGAGTGTCTAACCAAAGGCATATACTATTGGGAATTCACAAAGCATCATGAATGGCTTGCGTTTGTGCTATCTAAGAGGATATGGGGAGCTAAGAAGAAGAAAAGCAGCAACATTGGAGCTCACATGAAGAGGGTAACGAGGTTCATCGAGTTTCTTCAAGAAAAGGAGATTCACATTAGTTGTTTAACGCCTGCATGCTTGGAATATCTTATCAAAGAGTGGCAACTTCATTTGCTTATGCACAATGACCTTTTGTCCATCAAGGCCAACTTTGATGCTAACCTAAGGAAATTGTTGTTTCCCAATTCTCTCAAAACCACTCACCCTTCAACACTATCTTAA

Coding sequence (CDS)

ATGAAGCAATTGAGTGACAAAGTTGATGGATTAAGAAAAGAATATTTGGAAAAGGAGTGTCTAACCAAAGGCATATACTATTGGGAATTCACAAAGCATCATGAATGGCTTGCGTTTGTGCTATCTAAGAGGATATGGGGAGCTAAGAAGAAGAAAAGCAGCAACATTGGAGCTCACATGAAGAGGGTAACGAGGTTCATCGAGTTTCTTCAAGAAAAGGAGATTCACATTAGTTGTTTAACGCCTGCATGCTTGGAATATCTTATCAAAGAGTGGCAACTTCATTTGCTTATGCACAATGACCTTTTGTCCATCAAGGCCAACTTTGATGCTAACCTAAGGAAATTGTTGTTTCCCAATTCTCTCAAAACCACTCACCCTTCAACACTATCTTAA

Protein sequence

MKQLSDKVDGLRKEYLEKECLTKGIYYWEFTKHHEWLAFVLSKRIWGAKKKKSSNIGAHMKRVTRFIEFLQEKEIHISCLTPACLEYLIKEWQLHLLMHNDLLSIKANFDANLRKLLFPNSLKTTHPSTLS

Homology

[Close]

BLAST of Sed0019154 vs. NCBI nr
Match: XP_022951915.1 (probable transcription factor At1g66420 [Cucurbita moschata])

HSP 1 Score: 118.2 bits (295), Expect = 5.2e-23
Identity = 62/128 (48.44%), Postives = 90/128 (70.31%), Query Frame = 0


Query: 1   MKQLSDKVDGLRKEYLEKECLTKGIYYWEFTKHHEWLAFVLSKRIWGAKKKKSSNIGAHM 60
           M QLS+K+D  +KEYL+ EC  K     +F+++HE+  F+LS+RIWG K+ KS+  G  M
Sbjct: 96  MHQLSNKIDRFKKEYLKNECRKKE-NDLKFSEYHEFEVFMLSRRIWGGKRSKSN--GGRM 155

Query: 61  KRVTRFIEFLQEKEIHISCLTPACLEYLIKEWQLHLLMHNDLLSIKANFDANLRKLLFPN 120
           K    F+E+L+E +I I CLTP+CLE+  KEW++ LLM+ +LLS K+ FDA L +LLF  
Sbjct: 156 KYAKGFLEYLEEMDIDIDCLTPSCLEHFKKEWEVQLLMYIELLSKKSKFDAKLMELLF-- 215

Query: 121 SLKTTHPS 129
             K++HP+
Sbjct: 216 -TKSSHPN 217

[Close]

BLAST of Sed0019154 vs. NCBI nr
Match: KAG6585873.1 (putative transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-22
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MKQLSDKVDGLRKEYLEKECLTKGIYYWEFTKHHEWLAFVLSKRIWGAKKKKSSNIGAHM 60
           M QLS+K+D  +KEYL+ EC  K     +F+++HE+  F+LS+RIWG K+ KS+  G  M
Sbjct: 96  MHQLSNKIDRFKKEYLKNECRKKE-NDLKFSEYHEFEVFMLSRRIWGGKRSKSN--GGRM 155

Query: 61  KRVTRFIEFLQEKEIHISCLTPACLEYLIKEWQLHLLMHNDLLSIKANFDANLRKLLFPN 120
           K    F+E+L+E +I I CLTP+CLE+  KEW++ LLM+ +LLS K+ FDA L +LLF  
Sbjct: 156 KYAKGFLEYLEEMDIDIDCLTPSCLEHFKKEWEVQLLMYIELLSKKSKFDAKLMELLFTK 213

Query: 121 S 122
           S
Sbjct: 216 S 213

[Close]

BLAST of Sed0019154 vs. NCBI nr
Match: XP_023521141.1 (probable transcription factor At1g61730 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-22
Identity = 59/121 (48.76%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MKQLSDKVDGLRKEYLEKECLTKGIYYWEFTKHHEWLAFVLSKRIWGAKKKKSSNIGAHM 60
           M Q+S+K+D  +KEYL+ EC  K +   +F+++HE+  F+LS+RIWG K+ KS+  G  M
Sbjct: 96  MNQMSNKIDRFKKEYLKNEC-RKKVNDLKFSEYHEFEVFMLSRRIWGGKRSKSN--GGRM 155

Query: 61  KRVTRFIEFLQEKEIHISCLTPACLEYLIKEWQLHLLMHNDLLSIKANFDANLRKLLFPN 120
           K    F E+L+E +I I CLTP+CLE+  KEW++ LLM+ +LLS K+ FDA L +LLF  
Sbjct: 156 KYAKGFSEYLEEMDIDIDCLTPSCLEHFKKEWEVQLLMYIELLSKKSKFDAKLMELLFTK 213

Query: 121 S 122
           S
Sbjct: 216 S 213

[Close]

BLAST of Sed0019154 vs. NCBI nr
Match: XP_022973281.1 (probable transcription factor At1g61730 [Cucurbita maxima])

HSP 1 Score: 112.1 bits (279), Expect = 3.7e-21
Identity = 58/121 (47.93%), Postives = 84/121 (69.42%), Query Frame = 0


Query: 1   MKQLSDKVDGLRKEYLEKECLTKGIYYWEFTKHHEWLAFVLSKRIWGAKKKKSSNIGAHM 60
           M Q S+K+D  +KEYL+ EC  K     +F+++HE+  F+LSKRIWGA++ KS+  G  M
Sbjct: 96  MHQTSNKIDRFKKEYLKNECRKKE-NDLKFSEYHEFEVFMLSKRIWGARRSKSN--GGGM 155

Query: 61  KRVTRFIEFLQEKEIHISCLTPACLEYLIKEWQLHLLMHNDLLSIKANFDANLRKLLFPN 120
           K    F+E+L+E +I I CLTP+CLE+  KEW++ LLM+ +LLS K+ F+  L +LLF  
Sbjct: 156 KYAKGFLEYLEEMDIDIDCLTPSCLEHFKKEWEVQLLMYIELLSKKSKFNGKLMELLFTK 213

Query: 121 S 122
           S
Sbjct: 216 S 213

[Close]

BLAST of Sed0019154 vs. NCBI nr
Match: XP_022158994.1 (probable transcription factor At4g00610 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-12
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 1   MKQLSDKVDGLRKEYLEKECLTKGIYYWEFTKHHEWLAFVLSKRIWGAKKKKSSN---IG 60
           M Q+ +K+ GLR++YLE +      +    ++ H+      SKRIWGA + ++ N    G
Sbjct: 98  MHQMRNKIRGLRRKYLENDECNGLKFCGSGSQQHQRKVLAWSKRIWGAAENENENKNKNG 157

Query: 61  AHMKRVTR----FIEFLQEKEIHISCLTPACLEYLIKEWQLHLLMHNDLLSIKANFDANL 117
              + V +    F+E L+E EI + CL P+CLE+L K+W++  LMH  LLS K   DA L
Sbjct: 158 GGTRSVEQYERGFVESLEEMEIEMDCLKPSCLEFLYKDWEIQTLMHVQLLSNKCKLDAKL 217

[Close]

BLAST of Sed0019154 vs. ExPASy TrEMBL
Match: A0A6J1GK86 (probable transcription factor At1g66420 OS=Cucurbita moschata OX=3662 GN=LOC111454655 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 62/128 (48.44%), Postives = 90/128 (70.31%), Query Frame = 0


Query: 1   MKQLSDKVDGLRKEYLEKECLTKGIYYWEFTKHHEWLAFVLSKRIWGAKKKKSSNIGAHM 60
           M QLS+K+D  +KEYL+ EC  K     +F+++HE+  F+LS+RIWG K+ KS+  G  M
Sbjct: 96  MHQLSNKIDRFKKEYLKNECRKKE-NDLKFSEYHEFEVFMLSRRIWGGKRSKSN--GGRM 155

Query: 61  KRVTRFIEFLQEKEIHISCLTPACLEYLIKEWQLHLLMHNDLLSIKANFDANLRKLLFPN 120
           K    F+E+L+E +I I CLTP+CLE+  KEW++ LLM+ +LLS K+ FDA L +LLF  
Sbjct: 156 KYAKGFLEYLEEMDIDIDCLTPSCLEHFKKEWEVQLLMYIELLSKKSKFDAKLMELLF-- 215

Query: 121 SLKTTHPS 129
             K++HP+
Sbjct: 216 -TKSSHPN 217

[Close]

BLAST of Sed0019154 vs. ExPASy TrEMBL
Match: A0A6J1I882 (probable transcription factor At1g61730 OS=Cucurbita maxima OX=3661 GN=LOC111471848 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.8e-21
Identity = 58/121 (47.93%), Postives = 84/121 (69.42%), Query Frame = 0


Query: 1   MKQLSDKVDGLRKEYLEKECLTKGIYYWEFTKHHEWLAFVLSKRIWGAKKKKSSNIGAHM 60
           M Q S+K+D  +KEYL+ EC  K     +F+++HE+  F+LSKRIWGA++ KS+  G  M
Sbjct: 96  MHQTSNKIDRFKKEYLKNECRKKE-NDLKFSEYHEFEVFMLSKRIWGARRSKSN--GGGM 155

Query: 61  KRVTRFIEFLQEKEIHISCLTPACLEYLIKEWQLHLLMHNDLLSIKANFDANLRKLLFPN 120
           K    F+E+L+E +I I CLTP+CLE+  KEW++ LLM+ +LLS K+ F+  L +LLF  
Sbjct: 156 KYAKGFLEYLEEMDIDIDCLTPSCLEHFKKEWEVQLLMYIELLSKKSKFNGKLMELLFTK 213

Query: 121 S 122
           S
Sbjct: 216 S 213

[Close]

BLAST of Sed0019154 vs. ExPASy TrEMBL
Match: A0A6J1E125 (probable transcription factor At4g00610 OS=Momordica charantia OX=3673 GN=LOC111025438 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-12
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 1   MKQLSDKVDGLRKEYLEKECLTKGIYYWEFTKHHEWLAFVLSKRIWGAKKKKSSN---IG 60
           M Q+ +K+ GLR++YLE +      +    ++ H+      SKRIWGA + ++ N    G
Sbjct: 98  MHQMRNKIRGLRRKYLENDECNGLKFCGSGSQQHQRKVLAWSKRIWGAAENENENKNKNG 157

Query: 61  AHMKRVTR----FIEFLQEKEIHISCLTPACLEYLIKEWQLHLLMHNDLLSIKANFDANL 117
              + V +    F+E L+E EI + CL P+CLE+L K+W++  LMH  LLS K   DA L
Sbjct: 158 GGTRSVEQYERGFVESLEEMEIEMDCLKPSCLEFLYKDWEIQTLMHVQLLSNKCKLDAKL 217

The following BLAST results are available for this feature:

BLAST of Sed0019154 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951915.1	5.2e-23	48.44	probable transcription factor At1g66420 [Cucurbita moschata]	[more]
KAG6585873.1	1.5e-22	49.59	putative transcription factor, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023521141.1	1.5e-22	48.76	probable transcription factor At1g61730 [Cucurbita pepo subsp. pepo]	[more]
XP_022973281.1	3.7e-21	47.93	probable transcription factor At1g61730 [Cucurbita maxima]	[more]
XP_022158994.1	4.1e-12	37.40	probable transcription factor At4g00610 [Momordica charantia]	[more]

BLAST of Sed0019154 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0019154 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GK86	2.5e-23	48.44	probable transcription factor At1g66420 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1I882	1.8e-21	47.93	probable transcription factor At1g61730 OS=Cucurbita maxima OX=3661 GN=LOC111471...	[more]
A0A6J1E125	2.0e-12	37.40	probable transcription factor At4g00610 OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of Sed0019154 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019154.1	Sed0019154.1	mRNA