Sed0019145 (gene) Chayote v1

Overview
NameSed0019145
Typegene
OrganismSechium edule (Chayote v1)
DescriptionB3 domain-containing protein
LocationLG10: 4283875 .. 4284923 (-)
RNA-Seq ExpressionSed0019145
SyntenySed0019145
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTATTTGGAAACGTACACTAAGGGACAGTACCCTCCAATGAGCCCAAGACTGTCCTTCTCCAAGGACTTCGTCCAAACCCATAACCCCACAACTCATCATCCAAAAATGAGCCACTCAGACTCGAAGGACTTCGAATTCTCCGCACCCATCAACCCCCTTGACCAACCGCCCATGGCCGCCGCCGACAAGCTCTTCTTCAACGGAAAATTGCTGCCCACTCTCCGGGACGAGCTTCTCCTCGGCGACGATGACGACATGTCGCCCAAAGCCTCCCCCCCCAAATGGAAGCATTTTTTTGGCCTTAAGAGATCGGTCGATGGGCGCTGCACTGCCGCTACTAGTCAAGGCAAAATCCCCAAATTAGCACTCGACGATAACCCCCAAATTCCCACTTCCCGATCTGTGCTTTTTTGATGTTTGTTTTTTTTTTTTAAGGTTAATTGTGATTTTGTTCCATTGTCTGAGCTCATTGGTATATTTTGGTTGTTTCTGTACAAATTTGTGTGTGACAGCTTTGTGATTTGTGTTTTGCAGTTGTAACAGCATTTGTCTTTGCTAGTTTTTATCATTATTCGTGAATTTCAACCACTGGTTTTTTAGATGTTTGCCTTATTTTTCTGGTATATTTTGACCAATTATTATTAAGGGAATTTGCGTTCAACATCAAATTCTATCTCTTGTATTAGTTCTGGAATATAATTTCTAAAATAATTGAATGTATAGCACATTAGACATCTATCAATAATTAGTGATTCCAATTTCTCAAAAAAAAAAAAAAATTAGTGATTGACATTTATCACTAATGAGTGATAGAACTCAATTTGAATTTTTTACTACAAATGAATTAATTTTGGTTTTGTGCTATAGGTGTAAATATTTTGTCATTTTTTATTTTGTTTAATTAGGTATTTTTGACAAAGACCAAACCGCAGTTGAAACTTTTTGAACATTTTCTTTTTGAATTCTAAATAAATCTCGAGTTTGGAATCGAGAGACAGAGAAAAAAAAAAAAGAGAATGAACACAAAAAGAGGAAAGTATTAA

mRNA sequence

ATGGGTTATTTGGAAACGTACACTAAGGGACAGTACCCTCCAATGAGCCCAAGACTGTCCTTCTCCAAGGACTTCGTCCAAACCCATAACCCCACAACTCATCATCCAAAAATGAGCCACTCAGACTCGAAGGACTTCGAATTCTCCGCACCCATCAACCCCCTTGACCAACCGCCCATGGCCGCCGCCGACAAGCTCTTCTTCAACGGAAAATTGCTGCCCACTCTCCGGGACGAGCTTCTCCTCGGCGACGATGACGACATGTCGCCCAAAGCCTCCCCCCCCAAATGGAAGCATTTTTTTGGCCTTAAGAGATCGGTCGATGGGCGCTGCACTGCCGCTACTAGTCAAGGCAAAATCCCCAAATTAGCACTCGACGATAACCCCCAAATTCCCACTTCCCGATCTTTTGGAATCGAGAGACAGAGAAAAAAAAAAAAGAGAATGAACACAAAAAGAGGAAAGTATTAA

Coding sequence (CDS)

ATGGGTTATTTGGAAACGTACACTAAGGGACAGTACCCTCCAATGAGCCCAAGACTGTCCTTCTCCAAGGACTTCGTCCAAACCCATAACCCCACAACTCATCATCCAAAAATGAGCCACTCAGACTCGAAGGACTTCGAATTCTCCGCACCCATCAACCCCCTTGACCAACCGCCCATGGCCGCCGCCGACAAGCTCTTCTTCAACGGAAAATTGCTGCCCACTCTCCGGGACGAGCTTCTCCTCGGCGACGATGACGACATGTCGCCCAAAGCCTCCCCCCCCAAATGGAAGCATTTTTTTGGCCTTAAGAGATCGGTCGATGGGCGCTGCACTGCCGCTACTAGTCAAGGCAAAATCCCCAAATTAGCACTCGACGATAACCCCCAAATTCCCACTTCCCGATCTTTTGGAATCGAGAGACAGAGAAAAAAAAAAAAGAGAATGAACACAAAAAGAGGAAAGTATTAA

Protein sequence

MGYLETYTKGQYPPMSPRLSFSKDFVQTHNPTTHHPKMSHSDSKDFEFSAPINPLDQPPMAAADKLFFNGKLLPTLRDELLLGDDDDMSPKASPPKWKHFFGLKRSVDGRCTAATSQGKIPKLALDDNPQIPTSRSFGIERQRKKKKRMNTKRGKY
Homology
BLAST of Sed0019145 vs. NCBI nr
Match: XP_038882319.1 (uncharacterized protein LOC120073563 [Benincasa hispida])

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-27
Identity = 83/152 (54.61%), Postives = 93/152 (61.18%), Query Frame = 0

Query: 1   MGYLETY----TKGQYPPMSPRLSFSKDFVQ-THNPTTHH----------PKMSHSDSKD 60
           M  L+TY     KGQYPPMSPRLSFS DFV+ +H+P+  +          P    + S D
Sbjct: 1   MACLDTYKRSDQKGQYPPMSPRLSFSNDFVESSHHPSPTNTANNIQDQNIPPNISAPSDD 60

Query: 61  FEFSAPINPLDQPPMAAADKLFFNGKLLPTLRDELLLGDDDDMSPKASP---PKWKHFFG 120
           FEFSA  NP +   M AAD+LFF GKLLPTLRDELLL DDDD      P   P+WK F  
Sbjct: 61  FEFSA--NPSNHTAMTAADQLFFKGKLLPTLRDELLLNDDDDDDAAVPPKGLPRWKEFLS 120

Query: 121 LKRS-VDGRCTA-----ATSQGKIPKLALDDN 129
           LKRS VDGRCTA        QGKIPKL L DN
Sbjct: 121 LKRSVVDGRCTATDNNNGNQQGKIPKLTLHDN 150

BLAST of Sed0019145 vs. NCBI nr
Match: KAG7034345.1 (hypothetical protein SDJN02_04072, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-27
Identity = 83/151 (54.97%), Postives = 93/151 (61.59%), Query Frame = 0

Query: 1   MGYLETY----TKGQYPPMSPRLSFSKDFVQTHNPTTHH--------PKMSHSDSKDFEF 60
           M  L++Y     KG YPPMSPRLSFS DFV++H+ T  H        P +S SD  DFEF
Sbjct: 1   MACLDSYKSPDQKGHYPPMSPRLSFSNDFVESHHSTNTHISQHQNSPPNISASD--DFEF 60

Query: 61  SAPINPLDQPPMAAADKLFFNGKLLPTLRDELLLGDDDD------MSPKASPPKWKHFFG 120
           SA  NP +   M AAD+LFF GKLLPTLRDELLL DDDD        P    PKWK F  
Sbjct: 61  SALTNPSNH-TMTAADELFFKGKLLPTLRDELLLHDDDDAIAVPSFVPPKGLPKWKEFLS 120

Query: 121 LKRS-VDGRCTAA-----TSQGKIPKLALDD 128
           LKRS VDGRCT        +QGK+PKLAL D
Sbjct: 121 LKRSVVDGRCTGTGADNDNNQGKMPKLALHD 148

BLAST of Sed0019145 vs. NCBI nr
Match: TYK12894.1 (uncharacterized protein E5676_scaffold255G004880 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-27
Identity = 84/154 (54.55%), Postives = 98/154 (63.64%), Query Frame = 0

Query: 1   MGYLETY-----TKGQYPPMSPRLSFSKDFVQTHN---PTT-----HHPKM--SHSDSKD 60
           M  L+TY      KGQ+PPMSPRLSFS DFV++ N   PT        PK+  +   S D
Sbjct: 2   MACLDTYKNKSDQKGQFPPMSPRLSFSNDFVESSNNPSPTNTTNNIQDPKILSNTPPSDD 61

Query: 61  FEFSAPINPLDQPPMAAADKLFFNGKLLPTLRDELLLGDDDDMS---PKASPPKWKHFFG 120
           FEFS   NP +   M AAD+LFF GKLLPTLRDELL+ DD+D++   PK+  PKWK F  
Sbjct: 62  FEFSP--NPTNHTAMTAADQLFFKGKLLPTLRDELLIDDDEDIAPVPPKSGLPKWKEFLS 121

Query: 121 LKRS-VDGRCTAA-------TSQGKIPKLALDDN 129
           LKRS VDGRCTA         +QGKIPKLAL DN
Sbjct: 122 LKRSVVDGRCTATDNNKNIDANQGKIPKLALYDN 153

BLAST of Sed0019145 vs. NCBI nr
Match: XP_023544728.1 (uncharacterized protein LOC111804229 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-27
Identity = 85/156 (54.49%), Postives = 95/156 (60.90%), Query Frame = 0

Query: 1   MGYLETY----TKGQYPPMSPRLSFSKDFVQTHNPT-----TH-------HPKMSHSDSK 60
           M  L++Y     KG YPPMSPRLSFS DFV++H+PT     TH        P +S SD  
Sbjct: 1   MACLDSYKSPDQKGHYPPMSPRLSFSNDFVESHHPTNTNTNTHISQHQNSPPNISASD-- 60

Query: 61  DFEFSAPINPLDQPPMAAADKLFFNGKLLPTLRDELLLGDDDD-------MSPKASPPKW 120
           DFEFSA  NP +   M AAD+LFF GKLLPTLRDELLL DDDD         P    PKW
Sbjct: 61  DFEFSALTNPSNH-TMTAADELFFKGKLLPTLRDELLLHDDDDDAIVVPSFVPPKGLPKW 120

Query: 121 KHFFGLKRS-VDGRCTAA-----TSQGKIPKLALDD 128
           K F  LKRS VDGRCT        +QGK+PKLAL D
Sbjct: 121 KEFLSLKRSVVDGRCTGTGTDNDNNQGKMPKLALHD 153

BLAST of Sed0019145 vs. NCBI nr
Match: XP_008441107.1 (PREDICTED: uncharacterized protein LOC103485334 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 9.2e-27
Identity = 83/154 (53.90%), Postives = 97/154 (62.99%), Query Frame = 0

Query: 1   MGYLETY-----TKGQYPPMSPRLSFSKDFVQTHN---PTT-----HHPKM--SHSDSKD 60
           M  L+TY      KGQ+PPMSPRLSFS DFV++ N   PT        PK+  +   S D
Sbjct: 1   MACLDTYKNKSDQKGQFPPMSPRLSFSNDFVESSNNPSPTNTTNNIQDPKILSNTPPSDD 60

Query: 61  FEFSAPINPLDQPPMAAADKLFFNGKLLPTLRDELLLGDDDDMS---PKASPPKWKHFFG 120
           FEFS   NP +   M AAD+LFF GKLLPTL DELL+ DD+D++   PK+  PKWK F  
Sbjct: 61  FEFSP--NPTNHTAMTAADQLFFKGKLLPTLGDELLIDDDEDIAPVPPKSGLPKWKEFLS 120

Query: 121 LKRS-VDGRCTAA-------TSQGKIPKLALDDN 129
           LKRS VDGRCTA         +QGKIPKLAL DN
Sbjct: 121 LKRSVVDGRCTATDNNKNIDANQGKIPKLALYDN 152

BLAST of Sed0019145 vs. ExPASy TrEMBL
Match: A0A5D3CPD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004880 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 6.9e-28
Identity = 84/154 (54.55%), Postives = 98/154 (63.64%), Query Frame = 0

Query: 1   MGYLETY-----TKGQYPPMSPRLSFSKDFVQTHN---PTT-----HHPKM--SHSDSKD 60
           M  L+TY      KGQ+PPMSPRLSFS DFV++ N   PT        PK+  +   S D
Sbjct: 2   MACLDTYKNKSDQKGQFPPMSPRLSFSNDFVESSNNPSPTNTTNNIQDPKILSNTPPSDD 61

Query: 61  FEFSAPINPLDQPPMAAADKLFFNGKLLPTLRDELLLGDDDDMS---PKASPPKWKHFFG 120
           FEFS   NP +   M AAD+LFF GKLLPTLRDELL+ DD+D++   PK+  PKWK F  
Sbjct: 62  FEFSP--NPTNHTAMTAADQLFFKGKLLPTLRDELLIDDDEDIAPVPPKSGLPKWKEFLS 121

Query: 121 LKRS-VDGRCTAA-------TSQGKIPKLALDDN 129
           LKRS VDGRCTA         +QGKIPKLAL DN
Sbjct: 122 LKRSVVDGRCTATDNNKNIDANQGKIPKLALYDN 153

BLAST of Sed0019145 vs. ExPASy TrEMBL
Match: A0A1S3B2N0 (uncharacterized protein LOC103485334 OS=Cucumis melo OX=3656 GN=LOC103485334 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.5e-27
Identity = 83/154 (53.90%), Postives = 97/154 (62.99%), Query Frame = 0

Query: 1   MGYLETY-----TKGQYPPMSPRLSFSKDFVQTHN---PTT-----HHPKM--SHSDSKD 60
           M  L+TY      KGQ+PPMSPRLSFS DFV++ N   PT        PK+  +   S D
Sbjct: 1   MACLDTYKNKSDQKGQFPPMSPRLSFSNDFVESSNNPSPTNTTNNIQDPKILSNTPPSDD 60

Query: 61  FEFSAPINPLDQPPMAAADKLFFNGKLLPTLRDELLLGDDDDMS---PKASPPKWKHFFG 120
           FEFS   NP +   M AAD+LFF GKLLPTL DELL+ DD+D++   PK+  PKWK F  
Sbjct: 61  FEFSP--NPTNHTAMTAADQLFFKGKLLPTLGDELLIDDDEDIAPVPPKSGLPKWKEFLS 120

Query: 121 LKRS-VDGRCTAA-------TSQGKIPKLALDDN 129
           LKRS VDGRCTA         +QGKIPKLAL DN
Sbjct: 121 LKRSVVDGRCTATDNNKNIDANQGKIPKLALYDN 152

BLAST of Sed0019145 vs. ExPASy TrEMBL
Match: A0A6J1IL61 (uncharacterized protein LOC111478032 OS=Cucurbita maxima OX=3661 GN=LOC111478032 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 9.9e-27
Identity = 81/155 (52.26%), Postives = 92/155 (59.35%), Query Frame = 0

Query: 1   MGYLETY----TKGQYPPMSPRLSFSKDFVQTHNPTTHHPKMSH--------SDSKDFEF 60
           M  L++Y     KG YPPMSPRLSFS DFV++H+ T  +  +S         S S DFEF
Sbjct: 1   MACLDSYKSPDQKGHYPPMSPRLSFSNDFVESHHSTNTNTHISQHQNIPPNISVSDDFEF 60

Query: 61  SAPINPLDQPPMAAADKLFFNGKLLPTLRDELLLGDDDD--------MSPKASPPKWKHF 120
           SA  NP +   M AAD+LFF GKLLPTLRDELLL DDDD          P    PKWK F
Sbjct: 61  SALTNPSNH-TMTAADELFFKGKLLPTLRDELLLQDDDDDDAIVVPSFVPPKGLPKWKEF 120

Query: 121 FGLKRS-VDGRCTAA-------TSQGKIPKLALDD 128
             LKRS VDGRCT          +QGK+PKLAL D
Sbjct: 121 LSLKRSVVDGRCTGTGTGTDNDNNQGKMPKLALHD 154

BLAST of Sed0019145 vs. ExPASy TrEMBL
Match: A0A0A0KIB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490830 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 9.9e-27
Identity = 83/155 (53.55%), Postives = 96/155 (61.94%), Query Frame = 0

Query: 1   MGYLETY-----TKGQYPPMSPRLSFSKDFVQTHN---PTT-----HHPKM--SHSDSKD 60
           M  L+TY      KGQ+PPMSPRLSFS DFV++ N   PT+       PK+  +   S D
Sbjct: 2   MACLDTYKNKSDQKGQFPPMSPRLSFSNDFVESSNNPSPTSTTNNIQDPKILPNIPPSDD 61

Query: 61  FEFSAPINPLDQPPMAAADKLFFNGKLLPTLRDELLLGDDDD----MSPKASPPKWKHFF 120
           FEFS   NP +   M AAD+LFF GKLLPTLRDELL+ DDD+    + PK   PKWK F 
Sbjct: 62  FEFSP--NPTNHTAMTAADQLFFKGKLLPTLRDELLIDDDDEDFAPVPPKGGLPKWKEFL 121

Query: 121 GLKRS-VDGRCTAA-------TSQGKIPKLALDDN 129
            LKRS VDGRCTA         +Q KIPKLAL DN
Sbjct: 122 SLKRSVVDGRCTATDNNKNNDANQSKIPKLALYDN 154

BLAST of Sed0019145 vs. ExPASy TrEMBL
Match: A0A6J1GEJ6 (uncharacterized protein LOC111453452 OS=Cucurbita moschata OX=3662 GN=LOC111453452 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 9.9e-27
Identity = 84/156 (53.85%), Postives = 93/156 (59.62%), Query Frame = 0

Query: 1   MGYLETY----TKGQYPPMSPRLSFSKDFVQTH-----NPTTH-------HPKMSHSDSK 60
           M  L++Y     KG YPPMSPRLSFS DFV++H     N  TH        P +S SD  
Sbjct: 1   MACLDSYKSPDQKGHYPPMSPRLSFSNDFVESHHSTNTNTNTHISQHQNIPPNISASD-- 60

Query: 61  DFEFSAPINPLDQPPMAAADKLFFNGKLLPTLRDELLLGDDDD-------MSPKASPPKW 120
           DFEFSA  NP +   M AAD+LFF GKLLPTLRDELLL DDDD         P    PKW
Sbjct: 61  DFEFSALTNPSNH-TMTAADELFFKGKLLPTLRDELLLHDDDDDAIVVPSFVPPKGLPKW 120

Query: 121 KHFFGLKRS-VDGRCTAA-----TSQGKIPKLALDD 128
           K F  LKRS VDGRCT        +QGK+PKLAL D
Sbjct: 121 KEFLSLKRSVVDGRCTGTGTHNDNNQGKMPKLALHD 153

BLAST of Sed0019145 vs. TAIR 10
Match: AT5G66800.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-09
Identity = 48/139 (34.53%), Postives = 67/139 (48.20%), Query Frame = 0

Query: 1   MGYLETYTK--GQYPPMSPRLSFSKDFVQTHNPTTHHPK---------MSHSDSKDFEFS 60
           M  LE Y    G   PMSPR+SFS DFV+    TT   +          S S S +FEFS
Sbjct: 1   MACLEMYNSNGGGGTPMSPRISFSNDFVEIRPETTKTTRSSPLSKQEGSSSSFSDNFEFS 60

Query: 61  APINPLDQPPMAAADKLFFNGKLLP---------TLRDELLLGDDDDMSPKASPPKWKHF 120
                +    M  AD+LF  GKLLP         TLR+ELL+ +D++  P+ +     + 
Sbjct: 61  -----VSNYTMMPADELFSKGKLLPFKETNQVQRTLREELLVEEDEEEGPRDA----TNI 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038882319.11.1e-2754.61uncharacterized protein LOC120073563 [Benincasa hispida][more]
KAG7034345.11.1e-2754.97hypothetical protein SDJN02_04072, partial [Cucurbita argyrosperma subsp. argyro... [more]
TYK12894.11.4e-2754.55uncharacterized protein E5676_scaffold255G004880 [Cucumis melo var. makuwa][more]
XP_023544728.12.4e-2754.49uncharacterized protein LOC111804229 [Cucurbita pepo subsp. pepo][more]
XP_008441107.19.2e-2753.90PREDICTED: uncharacterized protein LOC103485334 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CPD36.9e-2854.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B2N04.5e-2753.90uncharacterized protein LOC103485334 OS=Cucumis melo OX=3656 GN=LOC103485334 PE=... [more]
A0A6J1IL619.9e-2752.26uncharacterized protein LOC111478032 OS=Cucurbita maxima OX=3661 GN=LOC111478032... [more]
A0A0A0KIB79.9e-2753.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490830 PE=4 SV=1[more]
A0A6J1GEJ69.9e-2753.85uncharacterized protein LOC111453452 OS=Cucurbita moschata OX=3662 GN=LOC1114534... [more]
Match NameE-valueIdentityDescription
AT5G66800.12.4e-0934.53unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 139..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..156
NoneNo IPR availablePANTHERPTHR31722OS06G0675200 PROTEINcoord: 11..126
NoneNo IPR availablePANTHERPTHR31722:SF62EMB|CAB62433.1|coord: 11..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0019145.1Sed0019145.1mRNA