Sed0019123 (gene) Chayote v1

Overview


Name	Sed0019123
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Pre-mRNA-splicing factor SF2
Location	LG01: 63527661 .. 63527962 (-)
RNA-Seq Expression	Sed0019123
Synteny	Sed0019123

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTATGAGTATTATTTTTAAAAAAATGGAGATACTTGCACACTCTCAGAAGAGCTATGCACTGCTAAAATTTTGGAGTGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACAGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCTTTATTTTGA

mRNA sequence

ATGGCAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGAATCATTATACTTGCACACTCTCAGAAGAGCTATGCACTGCTAAAATTTTGGAGTGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACAGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCTTTATTTTGA

Coding sequence (CDS)

ATGGCAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGAATCATTATACTTGCACACTCTCAGAAGAGCTATGCACTGCTAAAATTTTGGAGTGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACAGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCTTTATTTTGA

Protein sequence

MASAWTNMSIAIIHRDIEREWENHYTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIVFGSALF

Homology

[Close]

BLAST of Sed0019123 vs. NCBI nr
Match: KGN49818.1 (hypothetical protein Csa_000599 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 7.5e-34
Identity = 78/99 (78.79%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1  MASAWTNMSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYF 60
          M SA TNMSIAIIHRDIEREWE+H            TC+LSEELCTAK LE MRRYKIYF
Sbjct: 1  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF 60

Query: 61 NIIIPLEHLGANEQWNCGAQLTSRIALLVCFIVFGSALF 89
          NIIIPLEHLGANEQWNCGA+LTSRIALLVCFIV+ SALF
Sbjct: 61 NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALF 99

[Close]

BLAST of Sed0019123 vs. NCBI nr
Match: TYK05915.1 (Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 64/81 (79.01%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 8  MSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLE 67
          MSIAIIHRDIEREWE+H            TC+LSEELCTAK LE MRRYKIYFNIIIPLE
Sbjct: 1  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60

Query: 68 HLGANEQWNCGAQLTSRIALL 78
          HLGANEQWNCGA+LTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81

[Close]

BLAST of Sed0019123 vs. NCBI nr
Match: KAA0042513.1 (Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 64/81 (79.01%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 8  MSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLE 67
          MSIAIIHRDIEREWE+H            TC+LSEELCTAK LE MRRYKIYFNIIIPLE
Sbjct: 1  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60

Query: 68 HLGANEQWNCGAQLTSRIALL 78
          HLGANEQWNCGA+LTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81

[Close]

BLAST of Sed0019123 vs. NCBI nr
Match: PON83659.1 (hypothetical protein TorRG33x02_204650, partial [Trema orientale])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 48/96 (50.00%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 1   MASAWTNMSIAIIHRDIEREWENHYTCTL-------------SEELCT-AKILEWMRRYK 60
           MASAWTNMSIA+IHRDIER+WE    C +             S+++ T AKILE MRR K
Sbjct: 61  MASAWTNMSIAMIHRDIERDWE--IQCGVMGVIFLLLEILAHSQKIYTNAKILERMRRSK 120

Query: 61  IYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIV 83
                ++    L       CGA+LTSRIALLVCF+V
Sbjct: 121 FISIYLLLWSILEQMSNGACGARLTSRIALLVCFMV 154

[Close]

BLAST of Sed0019123 vs. NCBI nr
Match: KCW89084.1 (hypothetical protein EUGRSUZ_A01413, partial [Eucalyptus grandis])

HSP 1 Score: 75.5 bits (184), Expect = 2.6e-10
Identity = 43/93 (46.24%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 1   MASAWTNMSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYF 60
           M SAWTNMS A+I RD+EREWEN               +L E+L   +        K  F
Sbjct: 131 MTSAWTNMSFAVIRRDLEREWENQGGVMGIFLNNWRPWSLPEDLYICENSGEDVEIKFVF 190

Query: 61  NIIIPLEHLGANEQWNCGAQLTSRIALLVCFIV 83
              I LEHLGANEQW+  +     IALLVCFIV
Sbjct: 191 EFNIALEHLGANEQWSLWSMAHRGIALLVCFIV 223

[Close]

BLAST of Sed0019123 vs. ExPASy TrEMBL
Match: A0A0A0KJQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138500 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.6e-34
Identity = 78/99 (78.79%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1  MASAWTNMSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYF 60
          M SA TNMSIAIIHRDIEREWE+H            TC+LSEELCTAK LE MRRYKIYF
Sbjct: 1  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF 60

Query: 61 NIIIPLEHLGANEQWNCGAQLTSRIALLVCFIVFGSALF 89
          NIIIPLEHLGANEQWNCGA+LTSRIALLVCFIV+ SALF
Sbjct: 61 NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALF 99

[Close]

BLAST of Sed0019123 vs. ExPASy TrEMBL
Match: A0A5A7TGZ1 (Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00050 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.3e-27
Identity = 64/81 (79.01%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 8  MSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLE 67
          MSIAIIHRDIEREWE+H            TC+LSEELCTAK LE MRRYKIYFNIIIPLE
Sbjct: 1  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60

Query: 68 HLGANEQWNCGAQLTSRIALL 78
          HLGANEQWNCGA+LTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81

[Close]

BLAST of Sed0019123 vs. ExPASy TrEMBL
Match: A0A5D3C3G3 (Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00060 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.3e-27
Identity = 64/81 (79.01%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 8  MSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLE 67
          MSIAIIHRDIEREWE+H            TC+LSEELCTAK LE MRRYKIYFNIIIPLE
Sbjct: 1  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60

Query: 68 HLGANEQWNCGAQLTSRIALL 78
          HLGANEQWNCGA+LTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81

[Close]

BLAST of Sed0019123 vs. ExPASy TrEMBL
Match: A0A2P5EDP3 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_204650 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.3e-11
Identity = 48/96 (50.00%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 1   MASAWTNMSIAIIHRDIEREWENHYTCTL-------------SEELCT-AKILEWMRRYK 60
           MASAWTNMSIA+IHRDIER+WE    C +             S+++ T AKILE MRR K
Sbjct: 61  MASAWTNMSIAMIHRDIERDWE--IQCGVMGVIFLLLEILAHSQKIYTNAKILERMRRSK 120

Query: 61  IYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIV 83
                ++    L       CGA+LTSRIALLVCF+V
Sbjct: 121 FISIYLLLWSILEQMSNGACGARLTSRIALLVCFMV 154

[Close]

BLAST of Sed0019123 vs. ExPASy TrEMBL
Match: A0A059DF44 (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A01413 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 43/93 (46.24%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 1   MASAWTNMSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYF 60
           M SAWTNMS A+I RD+EREWEN               +L E+L   +        K  F
Sbjct: 131 MTSAWTNMSFAVIRRDLEREWENQGGVMGIFLNNWRPWSLPEDLYICENSGEDVEIKFVF 190

Query: 61  NIIIPLEHLGANEQWNCGAQLTSRIALLVCFIV 83
              I LEHLGANEQW+  +     IALLVCFIV
Sbjct: 191 EFNIALEHLGANEQWSLWSMAHRGIALLVCFIV 223

The following BLAST results are available for this feature:

BLAST of Sed0019123 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49818.1	7.5e-34	78.79	hypothetical protein Csa_000599 [Cucumis sativus]	[more]
TYK05915.1	1.5e-26	79.01	Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]	[more]
KAA0042513.1	1.5e-26	79.01	Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]	[more]
PON83659.1	1.5e-10	50.00	hypothetical protein TorRG33x02_204650, partial [Trema orientale]	[more]
KCW89084.1	2.6e-10	46.24	hypothetical protein EUGRSUZ_A01413, partial [Eucalyptus grandis]	[more]

BLAST of Sed0019123 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0019123 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJQ0	3.6e-34	78.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138500 PE=4 SV=1	[more]
A0A5A7TGZ1	7.3e-27	79.01	Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3C3G3	7.3e-27	79.01	Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A2P5EDP3	7.3e-11	50.00	Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_204...	[more]
A0A059DF44	1.3e-10	46.24	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A01...	[more]

BLAST of Sed0019123 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019123.1	Sed0019123.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding