Sed0019109 (gene) Chayote v1

Overview


Name	Sed0019109
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Pentatricopeptide repeat-containing protein
Location	LG06: 39901788 .. 39904114 (-)
RNA-Seq Expression	Sed0019109
Synteny	Sed0019109

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCATAAGAAAATGGATAAACAAAATCCAAGAATGGTTCGTCTATACCGTCCATCCAGGAAAAGCCACGCCGAAGAGTAAAAATTCCGAAAGCGGATTTTGCTTCTTCTTCTTATGGATGGGGTTTTCGCTGACCGTTTGTGGCAGTGGGAGAGACGACCAAAATTTTCTCGCCAATTTCTTCTCCAACAGACAATTCCTTTTTGCATTTTCAAGGTAAATTCTGTTCTTTCCTGAATCATCTTCTCTGCTTTTAGTACCCTGCAATTCACTGCATCTTGTATGAGTCTAATTATCAAGTATCAATGTCTATCTTGTGTTTTCCAACATGCCAATTCACTCTAACAAAACCAAACTCAACATTTTCCAACAATGACTTGACAAATCAACCCCACCCACTTTCCCTTTTGTCCAAATCTACATCTATTAGGGAGCTCAAGCAGATTCAAGCTTACACCATCAAAACCCATCTTCACAATGACATCTCTGTTCTCACCAAGTTCATCAACATCTGCACAACCAACCCCACAACTTCATCTATGGACCATGCCCACCATCTGTTCGATCAAATGCCTCACAAGGATATTGTCCTCTTTAACATAATGGCTCGCGGCTATGCTCGCTCTAATTCCCCATATCTTGCATTTCCTCTTTTTGCTCAAGCTCTGTGCTCTGGCCTTCTTCCTGATGAGTACTCGTTCACGTCTCTTTTCAAGGCGTGTGCTAGTTCTAAGGCTTTGAAAGAAGGTAGGCAGTTGCATTGCTTTTGTATTAAACTTGGACTAAGTCGCAACGTTTACATATGTCCAACCCTTATAAATATGTATGCCCAGTTCAAAGACGTGAATGCGGCGCGTGGAGTCTTTGATGGAATGGAGGAGCCGTGTATTGTTAGCTATAATGCAATTATCACGGGTTATGCTCGAAGTAGTCAGCCGAATGAGGCTTTGTCGTTGTTTAGAGAATTGCAAGCGAACAATGTTGAGCCTACGGATGTTACTATGCTTAGTATAATTATGTCATGTGCTTTGTTGGGAGCACTAGATTTGGGAAGGTGGATTCATGAATATGTTAAGATTAAAGGGTTTGATAAGTATGTGAAGGTGAACACTGCACTTATAGATATGTATGCGAAATGTGGAAGTCTATTGGATGCTATTTCTATCTTTGAGGGAATGCGTGTGAGAGACACGCAAGCTTGGTCTGCAATGATAGTTGCATTTGCAACTCATGGGGATGGCTTGAAAGCCATCTCGATGTTCGAAGAGATGAAGAAGGCAGGAGTTCGACCTGATGAGATAACGTTTTTGGGGCTTTTGTACGCTTGCAGTCATGCTGGGCTCGTAGAGGAAGGTAGAGGGTATTTCCATAGCATGTCTAAAAACTATGGAATAACTCCTGGGATTAAGCATTATGGATGTATGGTCGATGTACTTGGTCGAACAGGTCGTTTAGATGAGGCTTATAAGTTCATAGATGAATTGCCAATTAAGCCCACACCTATACTCTGGCGCACCCTGTTATCTTCTTGCAGCAACCATGGTGATGTCGACTTGGCAAAGCGGGTCATTGAACGAATTTTTGAGCTAGATGATTCCCATGGAGGGGACTATGTTATACTATCAAACTTGTGTGGTAGAGTAGGCAGATGGGAAGATGTGAACCATCTGAGGAAATTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGGTGTAGTTCAGTAGAGGTAAACAATGTAGTACACGAGTTCTTCTCTGGAGACGGTGTTCATTCCATTTCGGCGGAGTTGCGCCAAGCACTCGACGAGTTAATCAAAGAAATAAAGTTGGTGGGATATGTCCCTGATACTTCCTTAGTATATCATGCGGATATGGACGAGGAAGGGAAAGAACTTGTCCTGAGATATCACAGTGAAAAATTAGCCATGGCTTTTGGCCTCCTAAATACAACTCCTGGCACAACGATAAGGGTAGTCAAGAATCTCCGCATTTGTGGAGATTGTCATAATGCTGCAAAACTGATATCTTTAATTTTTGGGAGGCAGATCGTCATTAGAGACGTTCAACGATTCCATCGATTTGAAGACGGGAAATGCTCCTGTTGTGATTTCTGGTAATAGAATGTGTTGAATTCATAAGTCATTCTCACAGCTGATACTTTGTTCTGCAATGGCCATGATTTGCAATTCATATAGTAGACCTTCATGGGGAACCTTAATAATTTATATCCATGAAATTTCAGAACAAGTTTCATTTGGAGTTTGGACCTCCCCATATATCTTGTATGTAACTATTGGATGAATATATATTTCTACATCATCAACTAA

mRNA sequence

CACCATAAGAAAATGGATAAACAAAATCCAAGAATGGTTCGTCTATACCGTCCATCCAGGAAAAGCCACGCCGAAGAGTAAAAATTCCGAAAGCGGATTTTGCTTCTTCTTCTTATGGATGGGGTTTTCGCTGACCGTTTGTGGCAGTGGGAGAGACGACCAAAATTTTCTCGCCAATTTCTTCTCCAACAGACAATTCCTTTTTGCATTTTCAAGGTAAATTCTGTTCTTTCCTGAATCATCTTCTCTGCTTTTAGTACCCTGCAATTCACTGCATCTTGTATGAGTCTAATTATCAAGTATCAATGTCTATCTTGTGTTTTCCAACATGCCAATTCACTCTAACAAAACCAAACTCAACATTTTCCAACAATGACTTGACAAATCAACCCCACCCACTTTCCCTTTTGTCCAAATCTACATCTATTAGGGAGCTCAAGCAGATTCAAGCTTACACCATCAAAACCCATCTTCACAATGACATCTCTGTTCTCACCAAGTTCATCAACATCTGCACAACCAACCCCACAACTTCATCTATGGACCATGCCCACCATCTGTTCGATCAAATGCCTCACAAGGATATTGTCCTCTTTAACATAATGGCTCGCGGCTATGCTCGCTCTAATTCCCCATATCTTGCATTTCCTCTTTTTGCTCAAGCTCTGTGCTCTGGCCTTCTTCCTGATGAGTACTCGTTCACGTCTCTTTTCAAGGCGTGTGCTAGTTCTAAGGCTTTGAAAGAAGGTAGGCAGTTGCATTGCTTTTGTATTAAACTTGGACTAAGTCGCAACGTTTACATATGTCCAACCCTTATAAATATGTATGCCCAGTTCAAAGACGTGAATGCGGCGCGTGGAGTCTTTGATGGAATGGAGGAGCCGTGTATTGTTAGCTATAATGCAATTATCACGGGTTATGCTCGAAGTAGTCAGCCGAATGAGGCTTTGTCGTTGTTTAGAGAATTGCAAGCGAACAATGTTGAGCCTACGGATGTTACTATGCTTAGTATAATTATGTCATGTGCTTTGTTGGGAGCACTAGATTTGGGAAGGTGGATTCATGAATATGTTAAGATTAAAGGGTTTGATAAGTATGTGAAGGTGAACACTGCACTTATAGATATGTATGCGAAATGTGGAAGTCTATTGGATGCTATTTCTATCTTTGAGGGAATGCGTGTGAGAGACACGCAAGCTTGGTCTGCAATGATAGTTGCATTTGCAACTCATGGGGATGGCTTGAAAGCCATCTCGATGTTCGAAGAGATGAAGAAGGCAGGAGTTCGACCTGATGAGATAACGTTTTTGGGGCTTTTGTACGCTTGCAGTCATGCTGGGCTCGTAGAGGAAGGTAGAGGGTATTTCCATAGCATGTCTAAAAACTATGGAATAACTCCTGGGATTAAGCATTATGGATGTATGGTCGATGTACTTGGTCGAACAGGTCGTTTAGATGAGGCTTATAAGTTCATAGATGAATTGCCAATTAAGCCCACACCTATACTCTGGCGCACCCTGTTATCTTCTTGCAGCAACCATGGTGATGTCGACTTGGCAAAGCGGGTCATTGAACGAATTTTTGAGCTAGATGATTCCCATGGAGGGGACTATGTTATACTATCAAACTTGTGTGGTAGAGTAGGCAGATGGGAAGATGTGAACCATCTGAGGAAATTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGGTGTAGTTCAGTAGAGGTAAACAATGTAGTACACGAGTTCTTCTCTGGAGACGGTGTTCATTCCATTTCGGCGGAGTTGCGCCAAGCACTCGACGAGTTAATCAAAGAAATAAAGTTGGTGGGATATGTCCCTGATACTTCCTTAGTATATCATGCGGATATGGACGAGGAAGGGAAAGAACTTGTCCTGAGATATCACAGTGAAAAATTAGCCATGGCTTTTGGCCTCCTAAATACAACTCCTGGCACAACGATAAGGGTAGTCAAGAATCTCCGCATTTGTGGAGATTGTCATAATGCTGCAAAACTGATATCTTTAATTTTTGGGAGGCAGATCGTCATTAGAGACGTTCAACGATTCCATCGATTTGAAGACGGGAAATGCTCCTGTTGTGATTTCTGGTAATAGAATGTGTTGAATTCATAAGTCATTCTCACAGCTGATACTTTGTTCTGCAATGGCCATGATTTGCAATTCATATAGTAGACCTTCATGGGGAACCTTAATAATTTATATCCATGAAATTTCAGAACAAGTTTCATTTGGAGTTTGGACCTCCCCATATATCTTGTATGTAACTATTGGATGAATATATATTTCTACATCATCAACTAA

Coding sequence (CDS)

ATGTCTATCTTGTGTTTTCCAACATGCCAATTCACTCTAACAAAACCAAACTCAACATTTTCCAACAATGACTTGACAAATCAACCCCACCCACTTTCCCTTTTGTCCAAATCTACATCTATTAGGGAGCTCAAGCAGATTCAAGCTTACACCATCAAAACCCATCTTCACAATGACATCTCTGTTCTCACCAAGTTCATCAACATCTGCACAACCAACCCCACAACTTCATCTATGGACCATGCCCACCATCTGTTCGATCAAATGCCTCACAAGGATATTGTCCTCTTTAACATAATGGCTCGCGGCTATGCTCGCTCTAATTCCCCATATCTTGCATTTCCTCTTTTTGCTCAAGCTCTGTGCTCTGGCCTTCTTCCTGATGAGTACTCGTTCACGTCTCTTTTCAAGGCGTGTGCTAGTTCTAAGGCTTTGAAAGAAGGTAGGCAGTTGCATTGCTTTTGTATTAAACTTGGACTAAGTCGCAACGTTTACATATGTCCAACCCTTATAAATATGTATGCCCAGTTCAAAGACGTGAATGCGGCGCGTGGAGTCTTTGATGGAATGGAGGAGCCGTGTATTGTTAGCTATAATGCAATTATCACGGGTTATGCTCGAAGTAGTCAGCCGAATGAGGCTTTGTCGTTGTTTAGAGAATTGCAAGCGAACAATGTTGAGCCTACGGATGTTACTATGCTTAGTATAATTATGTCATGTGCTTTGTTGGGAGCACTAGATTTGGGAAGGTGGATTCATGAATATGTTAAGATTAAAGGGTTTGATAAGTATGTGAAGGTGAACACTGCACTTATAGATATGTATGCGAAATGTGGAAGTCTATTGGATGCTATTTCTATCTTTGAGGGAATGCGTGTGAGAGACACGCAAGCTTGGTCTGCAATGATAGTTGCATTTGCAACTCATGGGGATGGCTTGAAAGCCATCTCGATGTTCGAAGAGATGAAGAAGGCAGGAGTTCGACCTGATGAGATAACGTTTTTGGGGCTTTTGTACGCTTGCAGTCATGCTGGGCTCGTAGAGGAAGGTAGAGGGTATTTCCATAGCATGTCTAAAAACTATGGAATAACTCCTGGGATTAAGCATTATGGATGTATGGTCGATGTACTTGGTCGAACAGGTCGTTTAGATGAGGCTTATAAGTTCATAGATGAATTGCCAATTAAGCCCACACCTATACTCTGGCGCACCCTGTTATCTTCTTGCAGCAACCATGGTGATGTCGACTTGGCAAAGCGGGTCATTGAACGAATTTTTGAGCTAGATGATTCCCATGGAGGGGACTATGTTATACTATCAAACTTGTGTGGTAGAGTAGGCAGATGGGAAGATGTGAACCATCTGAGGAAATTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGGTGTAGTTCAGTAGAGGTAAACAATGTAGTACACGAGTTCTTCTCTGGAGACGGTGTTCATTCCATTTCGGCGGAGTTGCGCCAAGCACTCGACGAGTTAATCAAAGAAATAAAGTTGGTGGGATATGTCCCTGATACTTCCTTAGTATATCATGCGGATATGGACGAGGAAGGGAAAGAACTTGTCCTGAGATATCACAGTGAAAAATTAGCCATGGCTTTTGGCCTCCTAAATACAACTCCTGGCACAACGATAAGGGTAGTCAAGAATCTCCGCATTTGTGGAGATTGTCATAATGCTGCAAAACTGATATCTTTAATTTTTGGGAGGCAGATCGTCATTAGAGACGTTCAACGATTCCATCGATTTGAAGACGGGAAATGCTCCTGTTGTGATTTCTGGTAA

Protein sequence

MSILCFPTCQFTLTKPNSTFSNNDLTNQPHPLSLLSKSTSIRELKQIQAYTIKTHLHNDISVLTKFINICTTNPTTSSMDHAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQALCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKDVNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMSCALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSKNYGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAKRVIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKLAMAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCCDFW

Homology

[Close]

BLAST of Sed0019109 vs. NCBI nr
Match: XP_023541252.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1106.3 bits (2860), Expect = 0.0e+00
Identity = 536/603 (88.89%), Postives = 563/603 (93.37%), Query Frame = 0


Query: 1   MSILCFPTCQFTLTKPNSTFSNNDLTNQPHPLSLLSKSTSIRELKQIQAYTIKTHLHNDI 60
           M+I C PT QF L+KP      N+  NQPHPLSL SK +S+RELKQIQAYTIKT+LHNDI
Sbjct: 1   MAISCIPTSQFALSKP-----KNEFINQPHPLSLFSKCSSLRELKQIQAYTIKTNLHNDI 60

Query: 61  SVLTKFINICTTNPTTSSMDHAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQA 120
           SVLTK IN CT NPT SSMDHAHHLFD+M  KDIVLFNIMARGYARSNSPYL F LFAQ 
Sbjct: 61  SVLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQV 120

Query: 121 LCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKDV 180
           LCSGLLPD+Y+F+SL KACA SKAL+EGRQLHCF IKLGL  N+YICPTLINMYA   D+
Sbjct: 121 LCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDM 180

Query: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMSC 240
           NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQA+N+EPTDVTMLSIIMSC
Sbjct: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSC 240

Query: 241 ALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAWS 300
           ALLGALDLGRWIHEYVK KGFDK+VKVNTALIDMYAKCGS++DAISIFEGMRVRDTQAWS
Sbjct: 241 ALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWS 300

Query: 301 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSKN 360
           AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYF+SM KN
Sbjct: 301 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKN 360

Query: 361 YGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAKR 420
           +GITPGIKHYGCMVD+LGRTGRLDEAYKFIDEL IKPTPILWRTLLS+CSNHG+VDLAKR
Sbjct: 361 HGITPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKR 420

Query: 421 VIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480
           VIERIFELDDSHGGDYVILSNLC R+GRWEDVN LRKLMKDRGVVKVPGCSSVEVNNVVH
Sbjct: 421 VIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVH 480

Query: 481 EFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKLA 540
           EFFSGDGVHSIS ELR+ALDELIKEIKL GYVPDTSLVYHADM+EE KELVLRYHSEKLA
Sbjct: 481 EFFSGDGVHSISVELRRALDELIKEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLA 540

Query: 541 MAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCC 600
           MAFGLLNT PGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDG+CSCC
Sbjct: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCC 598

Query: 601 DFW 604
           DFW
Sbjct: 601 DFW 598

[Close]

BLAST of Sed0019109 vs. NCBI nr
Match: XP_022968061.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucurbita maxima])

HSP 1 Score: 1105.1 bits (2857), Expect = 0.0e+00
Identity = 534/603 (88.56%), Postives = 562/603 (93.20%), Query Frame = 0


Query: 1   MSILCFPTCQFTLTKPNSTFSNNDLTNQPHPLSLLSKSTSIRELKQIQAYTIKTHLHNDI 60
           M+I C PTCQF LTKP      N+  NQPHPLSL SK  S+RELKQIQAYTIKT+LHNDI
Sbjct: 1   MAISCIPTCQFALTKP-----KNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDI 60

Query: 61  SVLTKFINICTTNPTTSSMDHAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQA 120
           SVLTK IN CT  PTTSSMDHAHHLFD+M  KDIVLFNIMARGYARSNSPYL F LFAQ 
Sbjct: 61  SVLTKLINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQV 120

Query: 121 LCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKDV 180
           LCSGLLPD+Y+F+SL KACA SKAL+EGRQLHCF IKLG   N+YICPTLINMYA   D+
Sbjct: 121 LCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDM 180

Query: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMSC 240
           NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQA+N+EPTDVTMLSIIMSC
Sbjct: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSC 240

Query: 241 ALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAWS 300
           ALLGALDLGRWIHEYVK KGFDK+VKVNTALIDMYAKCGS++DAISIFEGMRVRDTQAWS
Sbjct: 241 ALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWS 300

Query: 301 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSKN 360
           AMIVA+ATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYF+SM KN
Sbjct: 301 AMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKN 360

Query: 361 YGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAKR 420
           +G+TPGIKHYGCMVD+LGRTGRLDEAYKFIDEL IKPTPILWRTLLS+CSNHG+VDLAKR
Sbjct: 361 HGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKR 420

Query: 421 VIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480
           VIERIFELDDSHGGDYVILSNLC R+GRWEDVN LRKLMKDRGVVKVPGCSSVEVNNVVH
Sbjct: 421 VIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVH 480

Query: 481 EFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKLA 540
           EFFSGDGVHSIS ELR+ALDELI+EIKL GYVPDTSLVYHADM+EE KELVLRYHSEKLA
Sbjct: 481 EFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLA 540

Query: 541 MAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCC 600
           MAFGLLNT PGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDG+CSCC
Sbjct: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCC 598

Query: 601 DFW 604
           DFW
Sbjct: 601 DFW 598

[Close]

BLAST of Sed0019109 vs. NCBI nr
Match: KAG7013140.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1104.7 bits (2856), Expect = 0.0e+00
Identity = 536/603 (88.89%), Postives = 561/603 (93.03%), Query Frame = 0


Query: 1   MSILCFPTCQFTLTKPNSTFSNNDLTNQPHPLSLLSKSTSIRELKQIQAYTIKTHLHNDI 60
           M+I C PT QF LTKP   F      NQPHPLSL SK TS+RELKQIQAYTIKT+LHNDI
Sbjct: 1   MAISCIPTSQFALTKPKKEF-----INQPHPLSLFSKCTSLRELKQIQAYTIKTNLHNDI 60

Query: 61  SVLTKFINICTTNPTTSSMDHAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQA 120
           SVLTK IN CT NPTTSSMDHAHHLFD+M  KDIVLFNIMARGYARSNSPYL F LFAQ 
Sbjct: 61  SVLTKLINFCTRNPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQV 120

Query: 121 LCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKDV 180
           LCSGLLPD+Y+F+SL KACA SKAL+EGRQLHCF IKLGL  N+YICPTLINMYA   D+
Sbjct: 121 LCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDM 180

Query: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMSC 240
           NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQA+N+EPTDVTMLSIIMSC
Sbjct: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSC 240

Query: 241 ALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAWS 300
           ALLGALDLGRWIHEYVK KGFDK+VKVNTALIDMYAKCGS++DAISIFEGMRVRDTQAWS
Sbjct: 241 ALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWS 300

Query: 301 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSKN 360
           AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLV+EGRGYF+SM KN
Sbjct: 301 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVDEGRGYFYSMYKN 360

Query: 361 YGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAKR 420
           +GITPGIKHYGCMVD+LGRTGRLDEAYKFIDEL IKPTPILWRTLLS+CSNHG+VDLAKR
Sbjct: 361 HGITPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKR 420

Query: 421 VIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480
           VIERIFELDDSHGGDYVILSNLC R+GRWEDVN LRKLMKDRGV KVPGCSSVEVNNVVH
Sbjct: 421 VIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVGKVPGCSSVEVNNVVH 480

Query: 481 EFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKLA 540
           EFFSGDGVHSIS ELR+ALDELIKEIKL GY PDTSLVYHADM+EE KELVLRYHSEKLA
Sbjct: 481 EFFSGDGVHSISVELRRALDELIKEIKLAGYAPDTSLVYHADMEEEAKELVLRYHSEKLA 540

Query: 541 MAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCC 600
           MAFGLLNT PGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDG+CSCC
Sbjct: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCC 598

Query: 601 DFW 604
           DFW
Sbjct: 601 DFW 598

[Close]

BLAST of Sed0019109 vs. NCBI nr
Match: XP_038893049.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Benincasa hispida])

HSP 1 Score: 1104.4 bits (2855), Expect = 0.0e+00
Identity = 530/603 (87.89%), Postives = 568/603 (94.20%), Query Frame = 0


Query: 1   MSILCFPTCQFTLTKPNSTFSNNDLTNQPHPLSLLSKSTSIRELKQIQAYTIKTHLHNDI 60
           M++ C PTCQFTLTKP+STFSNN+  NQPHPLSLLSK TS+RELKQIQAYTIKT+L ND+
Sbjct: 1   MTVSCIPTCQFTLTKPSSTFSNNEFINQPHPLSLLSKCTSLRELKQIQAYTIKTNLQNDV 60

Query: 61  SVLTKFINICTTNPTTSSMDHAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQA 120
           SVLTK INICT NPTTSSMD+AHHLFDQ+  KDIVLFNIMARGYARSNSP LAF LFA+ 
Sbjct: 61  SVLTKLINICTRNPTTSSMDYAHHLFDQISDKDIVLFNIMARGYARSNSPNLAFSLFAKV 120

Query: 121 LCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKDV 180
           L SGLLPD+Y+F+SL KACASSKA K+G +LHCF IKLGL+ N+YICPTLINMYA+  D+
Sbjct: 121 LSSGLLPDDYTFSSLLKACASSKAFKQGMELHCFAIKLGLNHNIYICPTLINMYAECNDM 180

Query: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMSC 240
           NAARGVFD +E+PCIVSYNAIITGYARSSQPNEALSLFRELQA+++EPTDVTMLSIIMSC
Sbjct: 181 NAARGVFDEIEQPCIVSYNAIITGYARSSQPNEALSLFRELQASHLEPTDVTMLSIIMSC 240

Query: 241 ALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAWS 300
           ALLGALDLGRWIHEYVK KGFDKYVKVNTALIDM+AKCGSL DAISIFEGMRVRDTQAWS
Sbjct: 241 ALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWS 300

Query: 301 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSKN 360
           AMIVAFATHGDGLKAISMFEEMK+ GVRPDEITFLGLLYACSHAGLVE+GR YF++MSKN
Sbjct: 301 AMIVAFATHGDGLKAISMFEEMKRTGVRPDEITFLGLLYACSHAGLVEQGREYFYNMSKN 360

Query: 361 YGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAKR 420
           YGITPGIKHYGCMVD+LGRTGRLDEAY FIDEL IKPTP+LWRTLLS+CS HG+VD+AKR
Sbjct: 361 YGITPGIKHYGCMVDLLGRTGRLDEAYNFIDELEIKPTPVLWRTLLSACSTHGNVDMAKR 420

Query: 421 VIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480
           V ERIFELDDSHGGDYVILSNLC RVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH
Sbjct: 421 VTERIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480

Query: 481 EFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKLA 540
           EFFSGDGVH IS ELR+ALDELIKEIKLVGYVPDTSLVYHADM+EEGKELVLRYHSEKLA
Sbjct: 481 EFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA 540

Query: 541 MAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCC 600
           MAFGLLNT PGTTIRVVKNLRICGDCHNAAKLISLIFGRQI+IRDVQRFHRFE+GKCSC 
Sbjct: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIIIRDVQRFHRFENGKCSCS 600

Query: 601 DFW 604
           DFW
Sbjct: 601 DFW 603

[Close]

BLAST of Sed0019109 vs. NCBI nr
Match: KAG6574081.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1103.2 bits (2852), Expect = 0.0e+00
Identity = 536/602 (89.04%), Postives = 561/602 (93.19%), Query Frame = 0


Query: 1   MSILCFPTCQFTLTKPNSTFSNNDLTNQPHPLSLLSKSTSIRELKQIQAYTIKTHLHNDI 60
           M+I C PT QF LTKP   F      NQPHPLSL SK TS+RELKQIQAYTIKT+LHNDI
Sbjct: 1   MAISCIPTSQFALTKPKKEF-----INQPHPLSLFSKCTSLRELKQIQAYTIKTNLHNDI 60

Query: 61  SVLTKFINICTTNPTTSSMDHAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQA 120
           SVLTK IN CT NPTTSSMDHAHHLFD+M  KDIVLFNIMARGYARSNSPYL F LFAQ 
Sbjct: 61  SVLTKLINFCTRNPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQV 120

Query: 121 LCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKDV 180
           LCSGLLPD+Y+F+SL KACA SKAL+EGRQLHCF IKLGL  N+YICPTLINMYA   D+
Sbjct: 121 LCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDM 180

Query: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMSC 240
           NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQA+N+EPTDVTMLSIIMSC
Sbjct: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSC 240

Query: 241 ALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAWS 300
           ALLGALDLGRWIHEYVK KGFDK+VKVNTALIDMYAKCGS++DAISIFEGMRVRDTQAWS
Sbjct: 241 ALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWS 300

Query: 301 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSKN 360
           AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLV+EGRGYF+SM KN
Sbjct: 301 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVDEGRGYFYSMYKN 360

Query: 361 YGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAKR 420
           +GITPGIKHYGCMVD+LGRTGRLDEAYKFIDEL IKPTPILWRTLLS+CSNHG+VDLAKR
Sbjct: 361 HGITPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKR 420

Query: 421 VIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480
           VIERIFELDDSHGGDYVILSNLC R+GRWEDVN LRKLMKDRGVVKVPGCSSVEVNNVVH
Sbjct: 421 VIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVH 480

Query: 481 EFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKLA 540
           EFFSGDGVHSIS ELR+ALDELIKEIKL GY PDTSLVYHADM+EE KELVLRYHSEKLA
Sbjct: 481 EFFSGDGVHSISVELRRALDELIKEIKLAGYAPDTSLVYHADMEEEAKELVLRYHSEKLA 540

Query: 541 MAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCC 600
           MAFGLLNT PGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDG+CSCC
Sbjct: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCC 597

Query: 601 DF 603
           DF
Sbjct: 601 DF 597

[Close]

BLAST of Sed0019109 vs. ExPASy Swiss-Prot
Match: Q8LK93 (Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 818.1 bits (2112), Expect = 6.3e-236
Identity = 386/583 (66.21%), Postives = 470/583 (80.62%), Query Frame = 0


Query: 21  SNNDLTNQPHPLSLLSKSTSIRELKQIQAYTIKTHLHNDISVLTKFINICTTNPTTSSMD 80
           S  D  N  +P+ L+SK  S+REL QIQAY IK+H+  D+S + K IN CT +PT SSM 
Sbjct: 22  SKIDTVNTQNPILLISKCNSLRELMQIQAYAIKSHI-EDVSFVAKLINFCTESPTESSMS 81

Query: 81  HAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQALCSGLLPDEYSFTSLFKACA 140
           +A HLF+ M   DIV+FN MARGY+R  +P   F LF + L  G+LPD Y+F SL KACA
Sbjct: 82  YARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACA 141

Query: 141 SSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKDVNAARGVFDGMEEPCIVSYNA 200
            +KAL+EGRQLHC  +KLGL  NVY+CPTLINMY + +DV++AR VFD + EPC+V YNA
Sbjct: 142 VAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNA 201

Query: 201 IITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMSCALLGALDLGRWIHEYVKIKG 260
           +ITGYAR ++PNEALSLFRE+Q   ++P ++T+LS++ SCALLG+LDLG+WIH+Y K   
Sbjct: 202 MITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHS 261

Query: 261 FDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFE 320
           F KYVKVNTALIDM+AKCGSL DA+SIFE MR +DTQAWSAMIVA+A HG   K++ MFE
Sbjct: 262 FCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFE 321

Query: 321 EMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSKNYGITPGIKHYGCMVDVLGRT 380
            M+   V+PDEITFLGLL ACSH G VEEGR YF  M   +GI P IKHYG MVD+L R 
Sbjct: 322 RMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRA 381

Query: 381 GRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAKRVIERIFELDDSHGGDYVILS 440
           G L++AY+FID+LPI PTP+LWR LL++CS+H ++DLA++V ERIFELDDSHGGDYVILS
Sbjct: 382 GNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILS 441

Query: 441 NLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISAELRQALD 500
           NL  R  +WE V+ LRK+MKDR  VKVPGCSS+EVNNVVHEFFSGDGV S + +L +ALD
Sbjct: 442 NLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALD 501

Query: 501 ELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKLAMAFGLLNTTPGTTIRVVKNL 560
           E++KE+KL GYVPDTS+V HA+M+++ KE+ LRYHSEKLA+ FGLLNT PGTTIRVVKNL
Sbjct: 502 EMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNL 561

Query: 561 RICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCCDFW 604
           R+C DCHNAAKLISLIFGR++V+RDVQRFH FEDGKCSC DFW
Sbjct: 562 RVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603

[Close]

BLAST of Sed0019109 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 5.2e-137
Identity = 236/603 (39.14%), Postives = 364/603 (60.36%), Query Frame = 0


Query: 32  LSLLSKSTSIRELKQIQAYTIKTHLHNDISVLTKFINICTTNPTTSSMDHAHHLFDQMPH 91
           +S L + +   ELKQI A  +KT L  D   +TKF++ C ++ ++  + +A  +FD    
Sbjct: 18  MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 92  KDIVLFNIMARGYARSNSPYLAFPLFAQALCSGLLPDEYSFTSLFKACASSKALKEGRQL 151
            D  L+N+M RG++ S+ P  +  L+ + LCS    + Y+F SL KAC++  A +E  Q+
Sbjct: 78  PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQI 137

Query: 152 HCFCIKLGLSRNVYICPTLINMYAQFKDVNAARGVFDGMEEPCIVSYNAIITGYARSSQP 211
           H    KLG   +VY   +LIN YA   +   A  +FD + EP  VS+N++I GY ++ + 
Sbjct: 138 HAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKM 197

Query: 212 N-------------------------------EALSLFRELQANNVEPTDVTMLSIIMSC 271
           +                               EAL LF E+Q ++VEP +V++ + + +C
Sbjct: 198 DIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSAC 257

Query: 272 ALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAWS 331
           A LGAL+ G+WIH Y+          +   LIDMYAKCG + +A+ +F+ ++ +  QAW+
Sbjct: 258 AQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWT 317

Query: 332 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSKN 391
           A+I  +A HG G +AIS F EM+K G++P+ ITF  +L ACS+ GLVEEG+  F+SM ++
Sbjct: 318 ALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERD 377

Query: 392 YGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAKR 451
           Y + P I+HYGC+VD+LGR G LDEA +FI E+P+KP  ++W  LL +C  H +++L + 
Sbjct: 378 YNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE 437

Query: 452 VIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 511
           + E +  +D  HGG YV  +N+     +W+     R+LMK++GV KVPGCS++ +    H
Sbjct: 438 IGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTH 497

Query: 512 EFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKLA 571
           EF +GD  H    +++     + ++++  GYVP+   +    +D++ +E ++  HSEKLA
Sbjct: 498 EFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLA 557

Query: 572 MAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCC 604
           + +GL+ T PGT IR++KNLR+C DCH   KLIS I+ R IV+RD  RFH F DGKCSC 
Sbjct: 558 ITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCG 617

[Close]

BLAST of Sed0019109 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 2.6e-136
Identity = 238/605 (39.34%), Postives = 370/605 (61.16%), Query Frame = 0


Query: 29  PHPLSLLSKSTSIRELKQIQAYTIKTHLHNDISVLTKFINICTTN--------------- 88
           P  L   +KS + +E +QI  + +K     D+ V T  I++   N               
Sbjct: 138 PFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPH 197

Query: 89  -------------PTTSSMDHAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQA 148
                         +   +++A  LFD++P KD+V +N M  GYA + +   A  LF   
Sbjct: 198 RDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM 257

Query: 149 LCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKDV 208
           + + + PDE +  ++  ACA S +++ GRQ+H +    G   N+ I   LI++Y++  ++
Sbjct: 258 MKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEL 317

Query: 209 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMSC 268
             A G+F+ +    ++S+N +I GY   +   EAL LF+E+  +   P DVTMLSI+ +C
Sbjct: 318 ETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPAC 377

Query: 269 ALLGALDLGRWIHEYV--KIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQA 328
           A LGA+D+GRWIH Y+  ++KG      + T+LIDMYAKCG +  A  +F  +  +   +
Sbjct: 378 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS 437

Query: 329 WSAMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMS 388
           W+AMI  FA HG    +  +F  M+K G++PD+ITF+GLL ACSH+G+++ GR  F +M+
Sbjct: 438 WNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMT 497

Query: 389 KNYGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLA 448
           ++Y +TP ++HYGCM+D+LG +G   EA + I+ + ++P  ++W +LL +C  HG+V+L 
Sbjct: 498 QDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELG 557

Query: 449 KRVIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNV 508
           +   E + +++  + G YV+LSN+    GRW +V   R L+ D+G+ KVPGCSS+E+++V
Sbjct: 558 ESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSV 617

Query: 509 VHEFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEK 568
           VHEF  GD  H  + E+   L+E+   ++  G+VPDTS V   +M+EE KE  LR+HSEK
Sbjct: 618 VHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ-EMEEEWKEGALRHHSEK 677

Query: 569 LAMAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCS 604
           LA+AFGL++T PGT + +VKNLR+C +CH A KLIS I+ R+I+ RD  RFH F DG CS
Sbjct: 678 LAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCS 737

[Close]

BLAST of Sed0019109 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 1.4e-134
Identity = 237/559 (42.40%), Postives = 353/559 (63.15%), Query Frame = 0


Query: 45  KQIQAYTIKTHLHNDISVLTKFINICTTNPTTSSMDHAHHLFDQMPHKDIVLFNIMARGY 104
           K+I  Y +++   + +++ T  +++        S++ A  LFD M  +++V +N M   Y
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDMYA---KCGSLETARQLFDGMLERNVVSWNSMIDAY 315

Query: 105 ARSNSPYLAFPLFAQALCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNV 164
            ++ +P  A  +F + L  G+ P + S      ACA    L+ GR +H   ++LGL RNV
Sbjct: 316 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 375

Query: 165 YICPTLINMYAQFKDVNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQAN 224
            +  +LI+MY + K+V+ A  +F  ++   +VS+NA+I G+A++ +P +AL+ F ++++ 
Sbjct: 376 SVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSR 435

Query: 225 NVEPTDVTMLSIIMSCALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDA 284
            V+P   T +S+I + A L      +WIH  V     DK V V TAL+DMYAKCG+++ A
Sbjct: 436 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA 495

Query: 285 ISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHA 344
             IF+ M  R    W+AMI  + THG G  A+ +FEEM+K  ++P+ +TFL ++ ACSH+
Sbjct: 496 RLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHS 555

Query: 345 GLVEEGRGYFHSMSKNYGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRT 404
           GLVE G   F+ M +NY I   + HYG MVD+LGR GRL+EA+ FI ++P+KP   ++  
Sbjct: 556 GLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 615

Query: 405 LLSSCSNHGDVDLAKRVIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGV 464
           +L +C  H +V+ A++  ER+FEL+   GG +V+L+N+      WE V  +R  M  +G+
Sbjct: 616 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 675

Query: 465 VKVPGCSSVEVNNVVHEFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMD 524
            K PGCS VE+ N VH FFSG   H  S ++   L++LI  IK  GYVPDT+LV   + D
Sbjct: 676 RKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVEND 735

Query: 525 EEGKELVLRYHSEKLAMAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIR 584
              KE +L  HSEKLA++FGLLNTT GTTI V KNLR+C DCHNA K ISL+ GR+IV+R
Sbjct: 736 V--KEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVR 795

Query: 585 DVQRFHRFEDGKCSCCDFW 604
           D+QRFH F++G CSC D+W
Sbjct: 796 DMQRFHHFKNGACSCGDYW 809

[Close]

BLAST of Sed0019109 vs. ExPASy Swiss-Prot
Match: Q9LIQ7 (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 2.2e-132
Identity = 240/594 (40.40%), Postives = 367/594 (61.78%), Query Frame = 0


Query: 21  SNNDLTNQPHPL------SLLSKSTSIRELKQ---IQAYTIKTHLHNDISVLTKFINICT 80
           S+NDL     P       +LL K T  + L Q   + A+ +++   +DI +    +N+  
Sbjct: 47  SSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYA 106

Query: 81  TNPTTSSMDHAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQALCSGLLPDEYS 140
                 S++ A  +F++MP +D V +  +  GY++ + P  A   F Q L  G  P+E++
Sbjct: 107 ---KCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFT 166

Query: 141 FTSLFKACASSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKDVNAARGVFDGME 200
            +S+ KA A+ +    G QLH FC+K G   NV++   L+++Y ++  ++ A+ VFD +E
Sbjct: 167 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALE 226

Query: 201 EPCIVSYNAIITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMSCALLGALDLGRW 260
               VS+NA+I G+AR S   +AL LF+ +  +   P+  +  S+  +C+  G L+ G+W
Sbjct: 227 SRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKW 286

Query: 261 IHEYVKIKGFDKYVK-VNTALIDMYAKCGSLLDAISIFEGMRVRDTQAWSAMIVAFATHG 320
           +H Y+ IK  +K V      L+DMYAK GS+ DA  IF+ +  RD  +W++++ A+A HG
Sbjct: 287 VHAYM-IKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHG 346

Query: 321 DGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSKNYGITPGIKHY 380
            G +A+  FEEM++ G+RP+EI+FL +L ACSH+GL++EG  Y+  M K+ GI P   HY
Sbjct: 347 FGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHY 406

Query: 381 GCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAKRVIERIFELDD 440
             +VD+LGR G L+ A +FI+E+PI+PT  +W+ LL++C  H + +L     E +FELD 
Sbjct: 407 VTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDP 466

Query: 441 SHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHS 500
              G +VIL N+    GRW D   +RK MK+ GV K P CS VE+ N +H F + D  H 
Sbjct: 467 DDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHP 526

Query: 501 ISAELRQALDELIKEIKLVGYVPDTS-LVYHADMDEEGKELVLRYHSEKLAMAFGLLNTT 560
              E+ +  +E++ +IK +GYVPDTS ++ H D  E  +E+ L+YHSEK+A+AF LLNT 
Sbjct: 527 QREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE--REVNLQYHSEKIALAFALLNTP 586

Query: 561 PGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCCDFW 604
           PG+TI + KN+R+CGDCH A KL S + GR+I++RD  RFH F+DG CSC D+W
Sbjct: 587 PGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633

[Close]

BLAST of Sed0019109 vs. ExPASy TrEMBL
Match: A0A6J1HTT7 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467412 PE=3 SV=1)

HSP 1 Score: 1105.1 bits (2857), Expect = 0.0e+00
Identity = 534/603 (88.56%), Postives = 562/603 (93.20%), Query Frame = 0


Query: 1   MSILCFPTCQFTLTKPNSTFSNNDLTNQPHPLSLLSKSTSIRELKQIQAYTIKTHLHNDI 60
           M+I C PTCQF LTKP      N+  NQPHPLSL SK  S+RELKQIQAYTIKT+LHNDI
Sbjct: 1   MAISCIPTCQFALTKP-----KNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDI 60

Query: 61  SVLTKFINICTTNPTTSSMDHAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQA 120
           SVLTK IN CT  PTTSSMDHAHHLFD+M  KDIVLFNIMARGYARSNSPYL F LFAQ 
Sbjct: 61  SVLTKLINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQV 120

Query: 121 LCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKDV 180
           LCSGLLPD+Y+F+SL KACA SKAL+EGRQLHCF IKLG   N+YICPTLINMYA   D+
Sbjct: 121 LCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDM 180

Query: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMSC 240
           NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQA+N+EPTDVTMLSIIMSC
Sbjct: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSC 240

Query: 241 ALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAWS 300
           ALLGALDLGRWIHEYVK KGFDK+VKVNTALIDMYAKCGS++DAISIFEGMRVRDTQAWS
Sbjct: 241 ALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWS 300

Query: 301 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSKN 360
           AMIVA+ATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYF+SM KN
Sbjct: 301 AMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKN 360

Query: 361 YGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAKR 420
           +G+TPGIKHYGCMVD+LGRTGRLDEAYKFIDEL IKPTPILWRTLLS+CSNHG+VDLAKR
Sbjct: 361 HGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKR 420

Query: 421 VIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480
           VIERIFELDDSHGGDYVILSNLC R+GRWEDVN LRKLMKDRGVVKVPGCSSVEVNNVVH
Sbjct: 421 VIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVH 480

Query: 481 EFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKLA 540
           EFFSGDGVHSIS ELR+ALDELI+EIKL GYVPDTSLVYHADM+EE KELVLRYHSEKLA
Sbjct: 481 EFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLA 540

Query: 541 MAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCC 600
           MAFGLLNT PGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDG+CSCC
Sbjct: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCC 598

Query: 601 DFW 604
           DFW
Sbjct: 601 DFW 598

[Close]

BLAST of Sed0019109 vs. ExPASy TrEMBL
Match: A0A6J1DA68 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019083 PE=3 SV=1)

HSP 1 Score: 1098.6 bits (2840), Expect = 0.0e+00
Identity = 528/603 (87.56%), Postives = 562/603 (93.20%), Query Frame = 0


Query: 1   MSILCFPTCQFTLTKPNSTFSNNDLTNQPHPLSLLSKSTSIRELKQIQAYTIKTHLHNDI 60
           M I C P+CQFTL KPNS F NN+ TN PHPL LLSK TS+RELKQIQA+TIKT+L NDI
Sbjct: 1   MGISCIPSCQFTLAKPNSAFPNNEFTNPPHPLFLLSKCTSLRELKQIQAFTIKTNLQNDI 60

Query: 61  SVLTKFINICTTNPTTSSMDHAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQA 120
           SVLTK IN CT NP+TSSMDHAHHLFDQ+P KDIVLFNIMARGYARSN+PYLAF LF+Q 
Sbjct: 61  SVLTKIINFCTLNPSTSSMDHAHHLFDQIPDKDIVLFNIMARGYARSNTPYLAFSLFSQV 120

Query: 121 LCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKDV 180
           LCSGLLPD+Y+F+SL KACASSKA  EGRQLHCF IKLGL+ N+YICP+LIN+YA+  D+
Sbjct: 121 LCSGLLPDDYTFSSLLKACASSKAFSEGRQLHCFAIKLGLNHNIYICPSLINLYAECNDM 180

Query: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMSC 240
           NAARGVFD ME PCIVSYNAIITG+ARSSQPNEALSLFRELQA+N+EPTDVTMLSIIMSC
Sbjct: 181 NAARGVFDEMEAPCIVSYNAIITGHARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSC 240

Query: 241 ALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAWS 300
           ALLGALDLGRWIHEYVK KGFDK+VKVNTALIDMYAKCGSL+DAISIFE MRVRDTQAWS
Sbjct: 241 ALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSLVDAISIFEDMRVRDTQAWS 300

Query: 301 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSKN 360
           AMIVA+ATHGDGLKAISMFEEMK+AGVRPDEITFLGLLYACSHAGLVEEGRGYF+SMSK 
Sbjct: 301 AMIVAYATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEEGRGYFNSMSKY 360

Query: 361 YGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAKR 420
           YGI PGIKHYGCMVD+LGRTG LDEAYKFID   IKPTPILWRTLLS+CSN G+VDLAKR
Sbjct: 361 YGIAPGIKHYGCMVDLLGRTGHLDEAYKFIDGSEIKPTPILWRTLLSACSNRGNVDLAKR 420

Query: 421 VIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480
           VIERIFELDDSHGGDYVILSNLC RVGRWEDVNH+RKLMKDRGVVKVPGCSSVEVNNVVH
Sbjct: 421 VIERIFELDDSHGGDYVILSNLCARVGRWEDVNHIRKLMKDRGVVKVPGCSSVEVNNVVH 480

Query: 481 EFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKLA 540
           EFFSGDGVHSIS ELR+ALDELIKEIKLVGYVPDTSLVYHADM+EEGKELVLRYHSEKLA
Sbjct: 481 EFFSGDGVHSISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA 540

Query: 541 MAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCC 600
           +AFGLLN+ PGT IRVVKNLRICGDCH AAKLIS IFGRQIVIRDVQRFHRFEDGKCSCC
Sbjct: 541 IAFGLLNSPPGTPIRVVKNLRICGDCHTAAKLISFIFGRQIVIRDVQRFHRFEDGKCSCC 600

Query: 601 DFW 604
           DFW
Sbjct: 601 DFW 603

[Close]

BLAST of Sed0019109 vs. ExPASy TrEMBL
Match: A0A6J1FZ61 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449232 PE=3 SV=1)

HSP 1 Score: 1097.8 bits (2838), Expect = 0.0e+00
Identity = 533/603 (88.39%), Postives = 561/603 (93.03%), Query Frame = 0


Query: 1   MSILCFPTCQFTLTKPNSTFSNNDLTNQPHPLSLLSKSTSIRELKQIQAYTIKTHLHNDI 60
           M+I C PT QF L+KP      N+  NQPHPLSL SK TS+RELKQIQAYTIKT+LHNDI
Sbjct: 1   MAISCIPTSQFALSKP-----KNESINQPHPLSLFSKCTSLRELKQIQAYTIKTNLHNDI 60

Query: 61  SVLTKFINICTTNPTTSSMDHAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQA 120
           SVLTK IN CT +PTTSSMDHAHHLFD+M  KDIVLFNIMARGYARSNSPYL F LFAQ 
Sbjct: 61  SVLTKLINFCTRSPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLIFSLFAQV 120

Query: 121 LCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKDV 180
           L SGLLPD+Y+F+SL KACA SKAL+EGRQLHCF IKLG   N+YICPTLINMYA   D+
Sbjct: 121 LFSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDM 180

Query: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMSC 240
           NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQA+N+EPTDVTMLSIIMSC
Sbjct: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSC 240

Query: 241 ALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAWS 300
           ALLGALDLGRWIHEYVK KGFDK+VKVNTALIDMYAKCGS++DAISIFEGMRVRDTQAWS
Sbjct: 241 ALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWS 300

Query: 301 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSKN 360
           AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLV+EG GYF+SM KN
Sbjct: 301 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVDEGTGYFYSMYKN 360

Query: 361 YGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAKR 420
           +GITPGIKHYGCMVD+LGRTGRLDEAYKFIDEL IKPTPILWRTLLS+CSNHG+VDLAKR
Sbjct: 361 HGITPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKR 420

Query: 421 VIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480
           VIERIFELDDSHGGDYVILSNLC R+GRWEDVN LRKLMKDRGVVKVPGCSSVEVNNVVH
Sbjct: 421 VIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVH 480

Query: 481 EFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKLA 540
           EFFSGDGVHSIS ELR+ALDELIKEIKL GYVPDTSLVYHADM+EE KELVLRYHSEKLA
Sbjct: 481 EFFSGDGVHSISVELRRALDELIKEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLA 540

Query: 541 MAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCC 600
           MAFGLLNT PGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDG+CSCC
Sbjct: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCC 598

Query: 601 DFW 604
           DFW
Sbjct: 601 DFW 598

[Close]

BLAST of Sed0019109 vs. ExPASy TrEMBL
Match: A0A5A7STH8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00400 PE=3 SV=1)

HSP 1 Score: 1084.3 bits (2803), Expect = 0.0e+00
Identity = 520/604 (86.09%), Postives = 565/604 (93.54%), Query Frame = 0


Query: 1   MSILCFPTCQFTLTKPNSTFSNND-LTNQPHPLSLLSKSTSIRELKQIQAYTIKTHLHND 60
           M+I C PTCQFTLTKP+STFS N+ + NQ HPLSLLSK TS++ELKQIQAYTIKT+L +D
Sbjct: 1   MAISCIPTCQFTLTKPSSTFSKNEFVINQLHPLSLLSKCTSLKELKQIQAYTIKTNLQSD 60

Query: 61  ISVLTKFINICTTNPTTSSMDHAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQ 120
           ISVLTK IN CT NPTTS MDHAHHLFDQ+  KDI+LFNIMARGYARSNSPYLAF LFAQ
Sbjct: 61  ISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFAQ 120

Query: 121 ALCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKD 180
            LCSGLLPD+Y+F+SL KACASSKAL++G  LHCF +KLGL+ N+YICPTLINMYA+  D
Sbjct: 121 LLCSGLLPDDYTFSSLLKACASSKALRQGMGLHCFAVKLGLNHNIYICPTLINMYAECND 180

Query: 181 VNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMS 240
           +NAARGVFD ME+PCIVSYNAIITGYARSSQPNEALSLFRELQA+++EPTDVTMLS+IMS
Sbjct: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASDIEPTDVTMLSVIMS 240

Query: 241 CALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAW 300
           CALLGALDLG+WIHEYVK KGFDKYVKVNTALIDM+AKCGSL DAISIFEGMRVRDTQAW
Sbjct: 241 CALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAW 300

Query: 301 SAMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSK 360
           SAMIVAFATHGDGLK+IS+FEEMK+AGVRPDEITFLGLLYACSHAGLVE+GRGYF+SMS+
Sbjct: 301 SAMIVAFATHGDGLKSISIFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSR 360

Query: 361 NYGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAK 420
            YGITPGIKHYGCMVD+LGRTG LDEAY F+DEL IKPTPILWRTLLS+CS HG+V++AK
Sbjct: 361 TYGITPGIKHYGCMVDLLGRTGCLDEAYNFVDELEIKPTPILWRTLLSACSTHGNVEMAK 420

Query: 421 RVIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480
           RVIERIFELDDSHGGDYVILSNL  RVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV
Sbjct: 421 RVIERIFELDDSHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480

Query: 481 HEFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKL 540
           HEFFSGDGVH +S ELR+ALDEL+KEIKLVGY+PDTSLVYHADMDEEGKELVLRYHSEKL
Sbjct: 481 HEFFSGDGVHCVSVELRRALDELMKEIKLVGYIPDTSLVYHADMDEEGKELVLRYHSEKL 540

Query: 541 AMAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSC 600
           AMAFGLLNT PGTTIRV KNLRICGDCHNAAKLIS IFGR+IVIRDVQRFH+FEDGKCSC
Sbjct: 541 AMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHQFEDGKCSC 600

Query: 601 CDFW 604
            DFW
Sbjct: 601 GDFW 604

[Close]

BLAST of Sed0019109 vs. ExPASy TrEMBL
Match: A0A1S3BFK0 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489124 PE=3 SV=1)

HSP 1 Score: 1084.3 bits (2803), Expect = 0.0e+00
Identity = 520/604 (86.09%), Postives = 565/604 (93.54%), Query Frame = 0


Query: 1   MSILCFPTCQFTLTKPNSTFSNND-LTNQPHPLSLLSKSTSIRELKQIQAYTIKTHLHND 60
           M+I C PTCQFTLTKP+STFS N+ + NQ HPLSLLSK TS++ELKQIQAYTIKT+L +D
Sbjct: 1   MAISCIPTCQFTLTKPSSTFSKNEFVINQLHPLSLLSKCTSLKELKQIQAYTIKTNLQSD 60

Query: 61  ISVLTKFINICTTNPTTSSMDHAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQ 120
           ISVLTK IN CT NPTTS MDHAHHLFDQ+  KDI+LFNIMARGYARSNSPYLAF LFAQ
Sbjct: 61  ISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFAQ 120

Query: 121 ALCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKD 180
            LCSGLLPD+Y+F+SL KACASSKAL++G  LHCF +KLGL+ N+YICPTLINMYA+  D
Sbjct: 121 LLCSGLLPDDYTFSSLLKACASSKALRQGMGLHCFAVKLGLNHNIYICPTLINMYAECND 180

Query: 181 VNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMS 240
           +NAARGVFD ME+PCIVSYNAIITGYARSSQPNEALSLFRELQA+++EPTDVTMLS+IMS
Sbjct: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASDIEPTDVTMLSVIMS 240

Query: 241 CALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAW 300
           CALLGALDLG+WIHEYVK KGFDKYVKVNTALIDM+AKCGSL DAISIFEGMRVRDTQAW
Sbjct: 241 CALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAW 300

Query: 301 SAMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSK 360
           SAMIVAFATHGDGLK+IS+FEEMK+AGVRPDEITFLGLLYACSHAGLVE+GRGYF+SMS+
Sbjct: 301 SAMIVAFATHGDGLKSISIFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSR 360

Query: 361 NYGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAK 420
            YGITPGIKHYGCMVD+LGRTG LDEAY F+DEL IKPTPILWRTLLS+CS HG+V++AK
Sbjct: 361 TYGITPGIKHYGCMVDLLGRTGCLDEAYNFVDELEIKPTPILWRTLLSACSTHGNVEMAK 420

Query: 421 RVIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480
           RVIERIFELDDSHGGDYVILSNL  RVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV
Sbjct: 421 RVIERIFELDDSHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480

Query: 481 HEFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKL 540
           HEFFSGDGVH +S ELR+ALDEL+KEIKLVGY+PDTSLVYHADMDEEGKELVLRYHSEKL
Sbjct: 481 HEFFSGDGVHCVSVELRRALDELMKEIKLVGYIPDTSLVYHADMDEEGKELVLRYHSEKL 540

Query: 541 AMAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSC 600
           AMAFGLLNT PGTTIRV KNLRICGDCHNAAKLIS IFGR+IVIRDVQRFH+FEDGKCSC
Sbjct: 541 AMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHQFEDGKCSC 600

Query: 601 CDFW 604
            DFW
Sbjct: 601 GDFW 604

[Close]

BLAST of Sed0019109 vs. TAIR 10
Match: AT2G02980.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 818.1 bits (2112), Expect = 4.5e-237
Identity = 386/583 (66.21%), Postives = 470/583 (80.62%), Query Frame = 0


Query: 21  SNNDLTNQPHPLSLLSKSTSIRELKQIQAYTIKTHLHNDISVLTKFINICTTNPTTSSMD 80
           S  D  N  +P+ L+SK  S+REL QIQAY IK+H+  D+S + K IN CT +PT SSM 
Sbjct: 22  SKIDTVNTQNPILLISKCNSLRELMQIQAYAIKSHI-EDVSFVAKLINFCTESPTESSMS 81

Query: 81  HAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQALCSGLLPDEYSFTSLFKACA 140
           +A HLF+ M   DIV+FN MARGY+R  +P   F LF + L  G+LPD Y+F SL KACA
Sbjct: 82  YARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACA 141

Query: 141 SSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKDVNAARGVFDGMEEPCIVSYNA 200
            +KAL+EGRQLHC  +KLGL  NVY+CPTLINMY + +DV++AR VFD + EPC+V YNA
Sbjct: 142 VAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNA 201

Query: 201 IITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMSCALLGALDLGRWIHEYVKIKG 260
           +ITGYAR ++PNEALSLFRE+Q   ++P ++T+LS++ SCALLG+LDLG+WIH+Y K   
Sbjct: 202 MITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHS 261

Query: 261 FDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFE 320
           F KYVKVNTALIDM+AKCGSL DA+SIFE MR +DTQAWSAMIVA+A HG   K++ MFE
Sbjct: 262 FCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFE 321

Query: 321 EMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSKNYGITPGIKHYGCMVDVLGRT 380
            M+   V+PDEITFLGLL ACSH G VEEGR YF  M   +GI P IKHYG MVD+L R 
Sbjct: 322 RMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRA 381

Query: 381 GRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAKRVIERIFELDDSHGGDYVILS 440
           G L++AY+FID+LPI PTP+LWR LL++CS+H ++DLA++V ERIFELDDSHGGDYVILS
Sbjct: 382 GNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILS 441

Query: 441 NLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISAELRQALD 500
           NL  R  +WE V+ LRK+MKDR  VKVPGCSS+EVNNVVHEFFSGDGV S + +L +ALD
Sbjct: 442 NLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALD 501

Query: 501 ELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKLAMAFGLLNTTPGTTIRVVKNL 560
           E++KE+KL GYVPDTS+V HA+M+++ KE+ LRYHSEKLA+ FGLLNT PGTTIRVVKNL
Sbjct: 502 EMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNL 561

Query: 561 RICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCCDFW 604
           R+C DCHNAAKLISLIFGR++V+RDVQRFH FEDGKCSC DFW
Sbjct: 562 RVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603

[Close]

BLAST of Sed0019109 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 489.6 bits (1259), Expect = 3.7e-138
Identity = 236/603 (39.14%), Postives = 364/603 (60.36%), Query Frame = 0


Query: 32  LSLLSKSTSIRELKQIQAYTIKTHLHNDISVLTKFINICTTNPTTSSMDHAHHLFDQMPH 91
           +S L + +   ELKQI A  +KT L  D   +TKF++ C ++ ++  + +A  +FD    
Sbjct: 18  MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 92  KDIVLFNIMARGYARSNSPYLAFPLFAQALCSGLLPDEYSFTSLFKACASSKALKEGRQL 151
            D  L+N+M RG++ S+ P  +  L+ + LCS    + Y+F SL KAC++  A +E  Q+
Sbjct: 78  PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQI 137

Query: 152 HCFCIKLGLSRNVYICPTLINMYAQFKDVNAARGVFDGMEEPCIVSYNAIITGYARSSQP 211
           H    KLG   +VY   +LIN YA   +   A  +FD + EP  VS+N++I GY ++ + 
Sbjct: 138 HAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKM 197

Query: 212 N-------------------------------EALSLFRELQANNVEPTDVTMLSIIMSC 271
           +                               EAL LF E+Q ++VEP +V++ + + +C
Sbjct: 198 DIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSAC 257

Query: 272 ALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQAWS 331
           A LGAL+ G+WIH Y+          +   LIDMYAKCG + +A+ +F+ ++ +  QAW+
Sbjct: 258 AQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWT 317

Query: 332 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMSKN 391
           A+I  +A HG G +AIS F EM+K G++P+ ITF  +L ACS+ GLVEEG+  F+SM ++
Sbjct: 318 ALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERD 377

Query: 392 YGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLAKR 451
           Y + P I+HYGC+VD+LGR G LDEA +FI E+P+KP  ++W  LL +C  H +++L + 
Sbjct: 378 YNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE 437

Query: 452 VIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 511
           + E +  +D  HGG YV  +N+     +W+     R+LMK++GV KVPGCS++ +    H
Sbjct: 438 IGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTH 497

Query: 512 EFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEKLA 571
           EF +GD  H    +++     + ++++  GYVP+   +    +D++ +E ++  HSEKLA
Sbjct: 498 EFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLA 557

Query: 572 MAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCC 604
           + +GL+ T PGT IR++KNLR+C DCH   KLIS I+ R IV+RD  RFH F DGKCSC 
Sbjct: 558 ITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCG 617

[Close]

BLAST of Sed0019109 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 487.3 bits (1253), Expect = 1.8e-137
Identity = 238/605 (39.34%), Postives = 370/605 (61.16%), Query Frame = 0


Query: 29  PHPLSLLSKSTSIRELKQIQAYTIKTHLHNDISVLTKFINICTTN--------------- 88
           P  L   +KS + +E +QI  + +K     D+ V T  I++   N               
Sbjct: 138 PFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPH 197

Query: 89  -------------PTTSSMDHAHHLFDQMPHKDIVLFNIMARGYARSNSPYLAFPLFAQA 148
                         +   +++A  LFD++P KD+V +N M  GYA + +   A  LF   
Sbjct: 198 RDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM 257

Query: 149 LCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNVYICPTLINMYAQFKDV 208
           + + + PDE +  ++  ACA S +++ GRQ+H +    G   N+ I   LI++Y++  ++
Sbjct: 258 MKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEL 317

Query: 209 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQANNVEPTDVTMLSIIMSC 268
             A G+F+ +    ++S+N +I GY   +   EAL LF+E+  +   P DVTMLSI+ +C
Sbjct: 318 ETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPAC 377

Query: 269 ALLGALDLGRWIHEYV--KIKGFDKYVKVNTALIDMYAKCGSLLDAISIFEGMRVRDTQA 328
           A LGA+D+GRWIH Y+  ++KG      + T+LIDMYAKCG +  A  +F  +  +   +
Sbjct: 378 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS 437

Query: 329 WSAMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFHSMS 388
           W+AMI  FA HG    +  +F  M+K G++PD+ITF+GLL ACSH+G+++ GR  F +M+
Sbjct: 438 WNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMT 497

Query: 389 KNYGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRTLLSSCSNHGDVDLA 448
           ++Y +TP ++HYGCM+D+LG +G   EA + I+ + ++P  ++W +LL +C  HG+V+L 
Sbjct: 498 QDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELG 557

Query: 449 KRVIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNV 508
           +   E + +++  + G YV+LSN+    GRW +V   R L+ D+G+ KVPGCSS+E+++V
Sbjct: 558 ESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSV 617

Query: 509 VHEFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMDEEGKELVLRYHSEK 568
           VHEF  GD  H  + E+   L+E+   ++  G+VPDTS V   +M+EE KE  LR+HSEK
Sbjct: 618 VHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ-EMEEEWKEGALRHHSEK 677

Query: 569 LAMAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCS 604
           LA+AFGL++T PGT + +VKNLR+C +CH A KLIS I+ R+I+ RD  RFH F DG CS
Sbjct: 678 LAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCS 737

[Close]

BLAST of Sed0019109 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 481.5 bits (1238), Expect = 1.0e-135
Identity = 237/559 (42.40%), Postives = 353/559 (63.15%), Query Frame = 0


Query: 45  KQIQAYTIKTHLHNDISVLTKFINICTTNPTTSSMDHAHHLFDQMPHKDIVLFNIMARGY 104
           K+I  Y +++   + +++ T  +++        S++ A  LFD M  +++V +N M   Y
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDMYA---KCGSLETARQLFDGMLERNVVSWNSMIDAY 315

Query: 105 ARSNSPYLAFPLFAQALCSGLLPDEYSFTSLFKACASSKALKEGRQLHCFCIKLGLSRNV 164
            ++ +P  A  +F + L  G+ P + S      ACA    L+ GR +H   ++LGL RNV
Sbjct: 316 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 375

Query: 165 YICPTLINMYAQFKDVNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQAN 224
            +  +LI+MY + K+V+ A  +F  ++   +VS+NA+I G+A++ +P +AL+ F ++++ 
Sbjct: 376 SVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSR 435

Query: 225 NVEPTDVTMLSIIMSCALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAKCGSLLDA 284
            V+P   T +S+I + A L      +WIH  V     DK V V TAL+DMYAKCG+++ A
Sbjct: 436 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA 495

Query: 285 ISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHA 344
             IF+ M  R    W+AMI  + THG G  A+ +FEEM+K  ++P+ +TFL ++ ACSH+
Sbjct: 496 RLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHS 555

Query: 345 GLVEEGRGYFHSMSKNYGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKPTPILWRT 404
           GLVE G   F+ M +NY I   + HYG MVD+LGR GRL+EA+ FI ++P+KP   ++  
Sbjct: 556 GLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 615

Query: 405 LLSSCSNHGDVDLAKRVIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRKLMKDRGV 464
           +L +C  H +V+ A++  ER+FEL+   GG +V+L+N+      WE V  +R  M  +G+
Sbjct: 616 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 675

Query: 465 VKVPGCSSVEVNNVVHEFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSLVYHADMD 524
            K PGCS VE+ N VH FFSG   H  S ++   L++LI  IK  GYVPDT+LV   + D
Sbjct: 676 RKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVEND 735

Query: 525 EEGKELVLRYHSEKLAMAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIR 584
              KE +L  HSEKLA++FGLLNTT GTTI V KNLR+C DCHNA K ISL+ GR+IV+R
Sbjct: 736 V--KEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVR 795

Query: 585 DVQRFHRFEDGKCSCCDFW 604
           D+QRFH F++G CSC D+W
Sbjct: 796 DMQRFHHFKNGACSCGDYW 809

[Close]

BLAST of Sed0019109 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 469.2 bits (1206), Expect = 5.1e-132
Identity = 237/626 (37.86%), Postives = 366/626 (58.47%), Query Frame = 0


Query: 30  HPLSL---LSKSTSIRELKQIQAYTIKTHLHNDISVLTKFINICTTNPT-TSSMDHAHHL 89
           HP SL   ++   +IR+L QI A  IK+    D     + +  C T+      +D+AH +
Sbjct: 22  HPSSLFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKI 81

Query: 90  FDQMPHKDIVLFNIMARGYARS--NSPYLAFPLFAQALCSGLL-PDEYSFTSLFKACASS 149
           F+QMP ++   +N + RG++ S  +   +A  LF + +    + P+ ++F S+ KACA +
Sbjct: 82  FNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKT 141

Query: 150 KALKEGRQLHCFCIKLGLSRNVYICPTLINMYA--------------------------- 209
             ++EG+Q+H   +K G   + ++   L+ MY                            
Sbjct: 142 GKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDR 201

Query: 210 ------------------QFKDVNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSL 269
                             +  D  AAR +FD M +  +VS+N +I+GY+ +    +A+ +
Sbjct: 202 RKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEV 261

Query: 270 FRELQANNVEPTDVTMLSIIMSCALLGALDLGRWIHEYVKIKGFDKYVKVNTALIDMYAK 329
           FRE++  ++ P  VT++S++ + + LG+L+LG W+H Y +  G      + +ALIDMY+K
Sbjct: 262 FREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSK 321

Query: 330 CGSLLDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGL 389
           CG +  AI +FE +   +   WSAMI  FA HG    AI  F +M++AGVRP ++ ++ L
Sbjct: 322 CGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINL 381

Query: 390 LYACSHAGLVEEGRGYFHSMSKNYGITPGIKHYGCMVDVLGRTGRLDEAYKFIDELPIKP 449
           L ACSH GLVEEGR YF  M    G+ P I+HYGCMVD+LGR+G LDEA +FI  +PIKP
Sbjct: 382 LTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKP 441

Query: 450 TPILWRTLLSSCSNHGDVDLAKRVIERIFELDDSHGGDYVILSNLCGRVGRWEDVNHLRK 509
             ++W+ LL +C   G+V++ KRV   + ++     G YV LSN+    G W +V+ +R 
Sbjct: 442 DDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRL 501

Query: 510 LMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISAELRQALDELIKEIKLVGYVPDTSL 569
            MK++ + K PGCS ++++ V+HEF   D  H  + E+   L E+  +++L GY P T+ 
Sbjct: 502 RMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQ 561

Query: 570 VYHADMDEEGKELVLRYHSEKLAMAFGLLNTTPGTTIRVVKNLRICGDCHNAAKLISLIF 604
           V   +++EE KE VL YHSEK+A AFGL++T+PG  IR+VKNLRIC DCH++ KLIS ++
Sbjct: 562 VL-LNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVY 621

The following BLAST results are available for this feature:

BLAST of Sed0019109 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541252.1	0.0e+00	88.89	pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucurbita ...	[more]
XP_022968061.1	0.0e+00	88.56	pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucurbita ...	[more]
KAG7013140.1	0.0e+00	88.89	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_038893049.1	0.0e+00	87.89	pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Benincasa ...	[more]
KAG6574081.1	0.0e+00	89.04	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]

BLAST of Sed0019109 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LK93	6.3e-236	66.21	Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidop...	[more]
Q9FJY7	5.2e-137	39.14	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX...	[more]
Q9LN01	2.6e-136	39.34	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q3E6Q1	1.4e-134	42.40	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]
Q9LIQ7	2.2e-132	40.40	Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop...	[more]

BLAST of Sed0019109 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HTT7	0.0e+00	88.56	pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucurbit...	[more]
A0A6J1DA68	0.0e+00	87.56	pentatricopeptide repeat-containing protein At2g02980, chloroplastic isoform X1 ...	[more]
A0A6J1FZ61	0.0e+00	88.39	pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucurbit...	[more]
A0A5A7STH8	0.0e+00	86.09	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BFK0	0.0e+00	86.09	pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucumis ...	[more]

BLAST of Sed0019109 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02980.1	4.5e-237	66.21	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G66520.1	3.7e-138	39.14	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G08070.1	1.8e-137	39.34	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G11290.1	1.0e-135	42.40	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G48910.1	5.1e-132	37.86	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 361..527 e-value: 1.1E-14 score: 56.7 coord: 247..360 e-value: 1.9E-24 score: 88.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 155..246 e-value: 2.3E-19 score: 71.4 coord: 32..154 e-value: 6.9E-14 score: 53.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 193..240 e-value: 1.4E-10 score: 41.2 coord: 295..341 e-value: 1.1E-9 score: 38.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 196..229 e-value: 1.1E-7 score: 29.6 coord: 333..365 e-value: 0.0014 score: 16.7 coord: 298..331 e-value: 1.7E-6 score: 25.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 370..393 e-value: 0.03 score: 14.6 coord: 401..425 e-value: 0.22 score: 11.8 coord: 169..192 e-value: 0.8 score: 10.1 coord: 269..294 e-value: 0.0042 score: 17.2 coord: 436..464 e-value: 1.0 score: 9.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 194..228 score: 11.640958
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 295..329 score: 11.542307
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 93..127 score: 8.736214
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 468..593 e-value: 5.3E-38 score: 129.8
None	No IPR available	PANTHER	PTHR47926:SF132	BNAA02G26650D PROTEIN	coord: 21..589
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 21..589

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019109.1	Sed0019109.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900865	chloroplast RNA modification
biological_process	GO:0031425	chloroplast RNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding