Sed0019093 (gene) Chayote v1

Overview
NameSed0019093
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG05: 1477815 .. 1478302 (-)
RNA-Seq ExpressionSed0019093
SyntenySed0019093
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTATTTACAAACCAACAACCCCTCCATGTATTTCACCAATCCCACAAAAACAACCCCCAAAAAATTCAATGGCCAAAATCTCTTTCATCTTCATCTTCATTTTGGTCCTCATTTCAGTTGCAGCCATGGCAGAAGCCAAAGAAAAAGATGTTTCAGTGAGTAGTTTTGATGGTCAACAGTTCATGTGGGGAAGGAAGGAGAGAGTGAACCATGGAAGCTTTAGAAGCCCTAAAAAACACCTTCTCAATCCTCACCAATTTGAGCCATTTGATCACTTTCAAGACCCTATTGATTTGTAAAAGCTTTTGATCTCTTATGTTCTTTTATTACTTTTTTCTTTTCTTTTTTTGGGTGTTTTTAGAGGGTGATTGTTTGGGAAAGTTCATATGATCATATTGTTTGTATTTAGTTTGGTGTACTTTGATTGGCACTCTAAGTTTGAGTTTGCTCTTTAATTGATGTATATGAAAACTTTGTGTTGTGGGC

mRNA sequence

TTTTATTTACAAACCAACAACCCCTCCATGTATTTCACCAATCCCACAAAAACAACCCCCAAAAAATTCAATGGCCAAAATCTCTTTCATCTTCATCTTCATTTTGGTCCTCATTTCAGTTGCAGCCATGGCAGAAGCCAAAGAAAAAGATGTTTCAGTGAGTAGTTTTGATGGTCAACAGTTCATGTGGGGAAGGAAGGAGAGAGTGAACCATGGAAGCTTTAGAAGCCCTAAAAAACACCTTCTCAATCCTCACCAATTTGAGCCATTTGATCACTTTCAAGACCCTATTGATTTGTAAAAGCTTTTGATCTCTTATGTTCTTTTATTACTTTTTTCTTTTCTTTTTTTGGGTGTTTTTAGAGGGTGATTGTTTGGGAAAGTTCATATGATCATATTGTTTGTATTTAGTTTGGTGTACTTTGATTGGCACTCTAAGTTTGAGTTTGCTCTTTAATTGATGTATATGAAAACTTTGTGTTGTGGGC

Coding sequence (CDS)

ATGGCCAAAATCTCTTTCATCTTCATCTTCATTTTGGTCCTCATTTCAGTTGCAGCCATGGCAGAAGCCAAAGAAAAAGATGTTTCAGTGAGTAGTTTTGATGGTCAACAGTTCATGTGGGGAAGGAAGGAGAGAGTGAACCATGGAAGCTTTAGAAGCCCTAAAAAACACCTTCTCAATCCTCACCAATTTGAGCCATTTGATCACTTTCAAGACCCTATTGATTTGTAA

Protein sequence

MAKISFIFIFILVLISVAAMAEAKEKDVSVSSFDGQQFMWGRKERVNHGSFRSPKKHLLNPHQFEPFDHFQDPIDL
Homology
[Close]
BLAST of Sed0019093 vs. NCBI nr
Match: KGN60344.1 (hypothetical protein Csa_002159 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 2.4e-12
Identity = 46/79 (58.23%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 1  MAKISFIFIFILVLISVAAMAE----AKEKDVSVSSFDGQQFMWGRKERVNHGSFRSPKK 60
          MAK SFI IFIL  ISV   A     +K KDV+       +F+WGRKER+NHGSFR P K
Sbjct: 1  MAKFSFILIFILAFISVTVAAAIGDMSKGKDVATKFHYHDEFIWGRKERINHGSFRGPDK 60

Query: 61 HLLN-PHQFEPFDHFQDPI 75
          +LLN PH F PFD FQ PI
Sbjct: 61 YLLNDPHPFHPFDQFQGPI 79

[Close]
BLAST of Sed0019093 vs. ExPASy TrEMBL
Match: A0A0A0LH37 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895900 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 46/79 (58.23%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 1  MAKISFIFIFILVLISVAAMAE----AKEKDVSVSSFDGQQFMWGRKERVNHGSFRSPKK 60
          MAK SFI IFIL  ISV   A     +K KDV+       +F+WGRKER+NHGSFR P K
Sbjct: 1  MAKFSFILIFILAFISVTVAAAIGDMSKGKDVATKFHYHDEFIWGRKERINHGSFRGPDK 60

Query: 61 HLLN-PHQFEPFDHFQDPI 75
          +LLN PH F PFD FQ PI
Sbjct: 61 YLLNDPHPFHPFDQFQGPI 79

The following BLAST results are available for this feature:
BLAST of Sed0019093 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60344.12.4e-1258.23hypothetical protein Csa_002159 [Cucumis sativus][more]
BLAST of Sed0019093 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0019093 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LH371.2e-1258.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895900 PE=4 SV=1[more]
BLAST of Sed0019093 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0019093.1Sed0019093.1mRNA