Sed0019016 (gene) Chayote v1

Overview


Name	Sed0019016
Type	gene
Organism	Sechium edule (Chayote v1)
Description	U6 snRNA-associated Sm-like protein LSm3
Location	LG11: 29531559 .. 29535275 (-)
RNA-Seq Expression	Sed0019016
Synteny	Sed0019016

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCATAAACCCCATTGTTGAATACAGAGAGCTTCGAGAGATCGACAATGGCGACTGAGGAAGAAAGCGCTGTGAAGGAGCCGTTGGATCTCATAAGGCTGAGTCTCGACGAGCGCATCTACGTCAAGCTTCGCTCTGATCGCGAACTTCGTGGCAGACTCCATGTACGCTCCCCACCCCCCTCGATTCATTCTTCTATTTTTCATATTATTTTCTCTGTTTCTTTCATCGAACAATGAATTGAATGCCCTCGCTTGTTGTTTTTTTTGGTCGCTATTTTGTTTTTGCTCAAATGAATGATTTGGAGGAATTAGGGTTTTGTAATTGATTGGGTTTCTTGATGAATTTCTGTTTTCATTTGATTCGTTTCGGTGAAAAATACGATATCTTAGTTTATTTCGGTTAGAATTACTAAAACAAGTCCTGAAGGGCTTTGACGTTATTCTCTCTTTCTAGGTTCGAGATGTGATATTACTCATTCGATATCTCCGGTGCCTGACCTAGAGACGGGGTGATTATCCTTGTTTTAAAAAAAAGAAAAAGAAAAATTTCAAATCAAAACCGTTAATGTCAGGGTCACAATTCAAGACTCACTTGTAAGATTAATTTGTAGATACTTTTAGTGTCAACATTCCTTTGTAGATACCTTTCTTGTCTCCATTCCTTTGATGTTTTCTAGTGCTTGGCCTAGAGACGAGATGGTTATCCCGGGTATAGCTAAGCTAAGTTATGATTTTCGGATTACCAAAAAAAAGAGAAAAAGAATTGCCCATTTTTTATTCTTGAGATTTTGCGTTTGAGCCAGGGAGTTGTTTCAAAGTTCTTCATTTCTTGGAGTGGAATTGGATAAATTTTGAAGTGACCTAATGCTGAACTGTACCAAAACCCTAACTACACGCTTCCACAGAAATCTCTGATCGTACCTGTAAAAAATTTAGAGTGAAAATTATTTTGGTGTGGTCTGCTTCTTATTATCCCATTCCCTCAGTGACACATCATTAGTTCTGATGTTCTTAAGTGAAGACCTTGTTTTCGGACAAATCCCTGTTAGTGTTACGGTGCTAAGTAGATTGTTGTATACTCATCTACATGATGTTGAATATGATTAGTTGCTGCCCTGTTGACACATGTATTGCATTTTTAGTTTGTGAATATATATATATATATAAACAGATCAAGCTTTGGTTAAAATGTTTCTTGATTTTTATTATTGATTGCTGAGATTTGCCTTTTCTGGAGTTTAACTGCATTTTTTTTTCTGGCTATCTTGCTTTGCAGGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACGGTTGAGATTGATGATGAGACCTATGAAGAGATAGTTCGGGTATGCTCATTTTCTAGCTTTTTTTTTTTATATGGGTGAATTGTTCATAGAAAAGAGAGTTAATGAAATGAAAGGGAAACAAAATGAGTCTTGCACAAGGATTGTTTGTAAAAATCTTGATATTTCATTTTAACCACTAAGCTCTGTGCTATAAAACAAATATGTACCACACACAGGAATCTATTCCATGAACAGTTAATTCTCTAACTACCGTGTGGAAGATAGTTGGAATTCTCTTAAGTTGGAACCATTTGAACCATAGATGTGTATCTTTCAAGCCCCATCACCTCCATAACTTTGTCCCAAGAAGATTTCGATGCCTGCCCATACGACTTGACCATTTTTTGTGATTACCCATCTATGAAAAAAGCTATTCCTCTTGAAATTTTGCCATCTTTGCCCTGATCTCTCCAATTAGTCATTTTGTCCGTCCCCAAGGGGTGGCACATTGGTTGAAGACTTGGACTTTAAAGGTATGTTTCCTTCAAGGTCCCAGGTTCGAGACTCACCTGAGACATTACTCCTTCGATGTCTCCCGGTGCCTGGCCTAGGAATGGGCGTGGTTACCCTTGTTTCAAAAAAAAAAAATAGCCATTTGGTCCGTCCCCAAGGGGTGTAACAGTTGGTCGAAAACTTGGGTTTAGAAGGCATGCTCCCCTCAAAGTCCCAGTTTCGAGACTCACCTGTGACATTAATTTGTAGACACCTCTCGTGTCTTCATTCTTTCGATGTCTTCTGGTGCCTGGCTTAGGGACAGGCGTGGTTACCCCTGTTTCAAAAAAAAAAAAGTTTAAGTCCCGTTTGATAACCATTTTGTTTATAAAATTTAAGCCTACAACAACTACTTTACTATACATTTTTCCTTATTTGGATATCTACATCTTACAAATATTTTAATAAACAAAACCCAAATTTGAAAACAAAAAAAAAGTAGTTTTCAAAAGCTTGTTTTTGTTTTTGAAATTTGGTTAGTATTCATCTACTTTCTTAAGGAAAGATGGATACATCATAGGAAAGATGGAGCACATGGTAGGAAATTTGAGTAGAAATAAGCTTAGATTTCATAAACCAAAAACAAAAAATCAAAGGGTTATCAAACGGGGTCTTAGTCATTTGGTCTTCCAAAGGAAGTACAACCTGTTACCAACCAGTTATCTTTTGATCCAGCCGCTTTTTCAAAAGAGTTGCCGTTTAGTCTTTGAGATCTTGCCAACATCCTTGCGGATAATGGACTTTGTATATGGGCATTCCACCAACAGTTGATAAAACAAAAAAAGTTGTCCTACTACCATGAAGAAGAATAAATTGAAGAGGGAACCGCATAATTTGAAATCTACCATTAGGCATTAACTATGATGAAACAACATCGAAGGCTTCATTGGTGGGATCATCTGTTGCTTACTGATTTGGTCTTTGTTTGCTTCTGGTGGGAGCTTCTTCAGGGTTGTCTTTTATTTTTGTTTATGTTTTGCTTTTATCCCTTTCGGTGGTGCAAATTGTGTTTGGTTTCTTTGTTTTCTCTTATCCTTTAGGAGCCTTAAATTGTATTCACCTTGTGCTCGGAGATATCACCTTTTTCATTAATGGATGGAATGTTCCCTTTTTTCCAAAAAATACAAGTGTGAAGCATTGTGTTTATAAAGGAGATATAAAACACCTATAGCTCAAAAAATTGAAGTCAAATCAAAGGAAAGAAAGCAAAGAATAGTAGAATACATCGAATCCCTCAAGTTTGTTCATTGACTCTATCCACACCTGTTGCGTTAACTCAAGCATTTTTCTTGTATCTATTATATACTTAAATGGAGATTTCGTACATTGATTGATTTTCTTTTCCAGACATCCAAGCGTACGGTACCGTTTCTTTTTGTTCGGGGAGATGGTGTCATATTGGTTTCACCTCCGCTGAGGACGGTTTAAGGTTAGGATTTTGGAAGTTCGCATGATGTGCATCCTTTAATCGGAACTTCTTATTCATCTTCTCTTCTTTCTAGGGAACGACTGGAGCTGAAAAGTTAGAAGATTCTCAATTTTCAGAACTATCAAGTACTTTAGTTGTTATTCATGTTGTATTTTGTTACATGAAACAGAAACTTGTTAGTTGTTTTGATGTAATTGAGCTGTAGTTTTTGACATTTTAATTGGGTGCACAAATTGAATTGTTTTAGATTTTTGCCAGTAAGGCCATGTTAGGAAAACTTGACATTATGCAACTAAGCCATAAAGTTGTTTGTTATCAAGCCAAAGAAAAGAAGATGAGAAATTGTTTCCATTTGTTGCATGCATTGTTGAAGTCATTTGTTTTTATTTGTTGGAGAAGTCTAATGTATTTGTGAACCAGT

mRNA sequence

AAATCATAAACCCCATTGTTGAATACAGAGAGCTTCGAGAGATCGACAATGGCGACTGAGGAAGAAAGCGCTGTGAAGGAGCCGTTGGATCTCATAAGGCTGAGTCTCGACGAGCGCATCTACGTCAAGCTTCGCTCTGATCGCGAACTTCGTGGCAGACTCCATGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACGGTTGAGATTGATGATGAGACCTATGAAGAGATAGTTCGGACATCCAAGCGTACGGTACCGTTTCTTTTTGTTCGGGGAGATGGTGTCATATTGGTTTCACCTCCGCTGAGGACGGTTTAAGGGAACGACTGGAGCTGAAAAGTTAGAAGATTCTCAATTTTCAGAACTATCAAGTACTTTAGTTGTTATTCATGTTGTATTTTGTTACATGAAACAGAAACTTGTTAGTTGTTTTGATGTAATTGAGCTGTAGTTTTTGACATTTTAATTGGGTGCACAAATTGAATTGTTTTAGATTTTTGCCAGTAAGGCCATGTTAGGAAAACTTGACATTATGCAACTAAGCCATAAAGTTGTTTGTTATCAAGCCAAAGAAAAGAAGATGAGAAATTGTTTCCATTTGTTGCATGCATTGTTGAAGTCATTTGTTTTTATTTGTTGGAGAAGTCTAATGTATTTGTGAACCAGT

Coding sequence (CDS)

ATGGCGACTGAGGAAGAAAGCGCTGTGAAGGAGCCGTTGGATCTCATAAGGCTGAGTCTCGACGAGCGCATCTACGTCAAGCTTCGCTCTGATCGCGAACTTCGTGGCAGACTCCATGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACGGTTGAGATTGATGATGAGACCTATGAAGAGATAGTTCGGACATCCAAGCGTACGGTACCGTTTCTTTTTGTTCGGGGAGATGGTGTCATATTGGTTTCACCTCCGCTGAGGACGGTTTAA

Protein sequence

MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRTV

Homology

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BLAST of Sed0019016 vs. NCBI nr
Match: NP_001235961.1 (Sm-like protein LSM3A-like [Glycine max] >XP_014506299.1 sm-like protein LSM3A [Vigna radiata var. radiata] >XP_017438868.1 PREDICTED: sm-like protein LSM3A [Vigna angularis] >XP_020238104.1 sm-like protein LSM3A [Cajanus cajan] >XP_028205727.1 sm-like protein LSM3A [Glycine soja] >KAF3445518.1 hypothetical protein FNV43_RR10694 [Rhamnella rubrinervis] >PON76226.1 LSM domain/archaea-type [Parasponia andersonii] >PON83050.1 LSM domain/archaea-type [Trema orientale] >BAU02053.1 hypothetical protein VIGAN_11146700 [Vigna angularis var. angularis] >ACU13588.1 unknown [Glycine max])

HSP 1 Score: 184.5 bits (467), Expect = 4.4e-43
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+KRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Sed0019016 vs. NCBI nr
Match: XP_022133461.1 (sm-like protein LSM3A [Momordica charantia] >XP_022939502.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022952859.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022990502.1 sm-like protein LSM3A [Cucurbita maxima] >XP_022993940.1 sm-like protein LSM3A [Cucurbita maxima] >XP_023548062.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_023551427.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_038886358.1 sm-like protein LSM3A [Benincasa hispida] >KAG6578889.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032866.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6602182.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.1 bits (466), Expect = 5.7e-43
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTS+RTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of Sed0019016 vs. NCBI nr
Match: XP_002532432.1 (sm-like protein LSM3A [Ricinus communis] >XP_007152030.1 hypothetical protein PHAVU_004G095700g [Phaseolus vulgaris] >XP_027924169.1 sm-like protein LSM3A [Vigna unguiculata] >XP_028763721.1 sm-like protein LSM3A [Prosopis alba] >XP_031284687.1 sm-like protein LSM3A [Pistacia vera] >KAF7812898.1 Sm-like protein LSM3B [Senna tora] >EEF29947.1 snrnp sm protein, putative [Ricinus communis] >ESW24024.1 hypothetical protein PHAVU_004G095700g [Phaseolus vulgaris])

HSP 1 Score: 184.1 bits (466), Expect = 5.7e-43
Identity = 93/96 (96.88%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEE+VTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60

Query: 61 IDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+KRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Sed0019016 vs. NCBI nr
Match: MQL89806.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 183.7 bits (465), Expect = 7.4e-43
Identity = 92/96 (95.83%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEI+TTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVE 60

Query: 61 IDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+KRT+PFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Sed0019016 vs. NCBI nr
Match: KAG9455091.1 (hypothetical protein H6P81_007995 [Aristolochia fimbriata])

HSP 1 Score: 183.7 bits (465), Expect = 7.4e-43
Identity = 92/96 (95.83%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1   MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 60
           MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEI+TTVE
Sbjct: 843 MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVE 902

Query: 61  IDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRT 97
           IDDETYEEIVRTS+RT+PFLFVRGDGVILVSPPLRT
Sbjct: 903 IDDETYEEIVRTSRRTIPFLFVRGDGVILVSPPLRT 938

[Close]

BLAST of Sed0019016 vs. ExPASy Swiss-Prot
Match: Q9LMN4 (Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.0e-42
Identity = 82/96 (85.42%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EE++ V+EPLDLIRLS++ERIYVKLRSDRELRG+LHA+DQHLNMILGDVEE++TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+KRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Sed0019016 vs. ExPASy Swiss-Prot
Match: Q9C6K5 (Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.9e-41
Identity = 84/96 (87.50%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EEE+ V+EPLDLIRLSLDERIYVKLRSDRELRG+LHA+DQHLNMILGDVEE +TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+KRT+ FLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Sed0019016 vs. ExPASy Swiss-Prot
Match: Q32PE9 (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3)

HSP 1 Score: 152.1 bits (383), Expect = 3.1e-36
Identity = 72/89 (80.90%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 7   SAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           + V+EPLDLIRLSLDERIYVK+R+DRELRGRLHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSKRTVPFLFVRGDGVILVSPPLR 96
           EEI +++KR +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of Sed0019016 vs. ExPASy Swiss-Prot
Match: P62310 (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 3.1e-36
Identity = 72/89 (80.90%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 7   SAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           + V+EPLDLIRLSLDERIYVK+R+DRELRGRLHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSKRTVPFLFVRGDGVILVSPPLR 96
           EEI +++KR +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of Sed0019016 vs. ExPASy Swiss-Prot
Match: P62311 (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 3.1e-36
Identity = 72/89 (80.90%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 7   SAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           + V+EPLDLIRLSLDERIYVK+R+DRELRGRLHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSKRTVPFLFVRGDGVILVSPPLR 96
           EEI +++KR +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of Sed0019016 vs. ExPASy TrEMBL
Match: A0A0B2SAJ4 (U6 snRNA-associated Sm-like protein LSm3 OS=Glycine soja OX=3848 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.1e-43
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+KRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Sed0019016 vs. ExPASy TrEMBL
Match: C6SWG5 (U6 snRNA-associated Sm-like protein LSm3 OS=Glycine max OX=3847 GN=100499782 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.1e-43
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+KRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Sed0019016 vs. ExPASy TrEMBL
Match: A0A1S3UK26 (U6 snRNA-associated Sm-like protein LSm3 OS=Vigna radiata var. radiata OX=3916 GN=LOC106766048 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.1e-43
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+KRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Sed0019016 vs. ExPASy TrEMBL
Match: A0A151RN45 (U6 snRNA-associated Sm-like protein LSm3 OS=Cajanus cajan OX=3821 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.1e-43
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+KRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Sed0019016 vs. ExPASy TrEMBL
Match: A0A2P5DSG3 (U6 snRNA-associated Sm-like protein LSm3 OS=Parasponia andersonii OX=3476 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.1e-43
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+KRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Sed0019016 vs. TAIR 10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 171.4 bits (433), Expect = 3.6e-43
Identity = 82/96 (85.42%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EE++ V+EPLDLIRLS++ERIYVKLRSDRELRG+LHA+DQHLNMILGDVEE++TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+KRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Sed0019016 vs. TAIR 10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 169.5 bits (428), Expect = 1.4e-42
Identity = 84/96 (87.50%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EEE+ V+EPLDLIRLSLDERIYVKLRSDRELRG+LHA+DQHLNMILGDVEE +TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSKRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+KRT+ FLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Sed0019016 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.1e-07
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 3   TEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L GR+ A+D+H NM+L +V E+ T V 
Sbjct: 14  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73

Query: 63  IDDETYEEIVRTSK-RTVPFLFVRGDGVILV 91
              +  ++ +  ++ R +  +F+RGD VI+V
Sbjct: 74  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104

[Close]

BLAST of Sed0019016 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.1e-07
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 3   TEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L GR+ A+D+H NM+L +V E+ T V 
Sbjct: 13  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 72

Query: 63  IDDETYEEIVRTSK-RTVPFLFVRGDGVILV 91
              +  ++ +  ++ R +  +F+RGD VI+V
Sbjct: 73  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 103

[Close]

BLAST of Sed0019016 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.1e-07
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 3   TEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L GR+ A+D+H NM+L +V E+ T V 
Sbjct: 13  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 72

Query: 63  IDDETYEEIVRTSK-RTVPFLFVRGDGVILV 91
              +  ++ +  ++ R +  +F+RGD VI+V
Sbjct: 73  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 103

The following BLAST results are available for this feature:

BLAST of Sed0019016 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001235961.1	4.4e-43	97.92	Sm-like protein LSM3A-like [Glycine max] >XP_014506299.1 sm-like protein LSM3A [...	[more]
XP_022133461.1	5.7e-43	96.91	sm-like protein LSM3A [Momordica charantia] >XP_022939502.1 sm-like protein LSM3...	[more]
XP_002532432.1	5.7e-43	96.88	sm-like protein LSM3A [Ricinus communis] >XP_007152030.1 hypothetical protein PH...	[more]
MQL89806.1	7.4e-43	95.83	hypothetical protein [Colocasia esculenta]	[more]
KAG9455091.1	7.4e-43	95.83	hypothetical protein H6P81_007995 [Aristolochia fimbriata]	[more]

BLAST of Sed0019016 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMN4	5.0e-42	85.42	Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1	[more]
Q9C6K5	1.9e-41	87.50	Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1	[more]
Q32PE9	3.1e-36	80.90	U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3	[more]
P62310	3.1e-36	80.90	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV...	[more]
P62311	3.1e-36	80.90	U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 S...	[more]

BLAST of Sed0019016 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0B2SAJ4	2.1e-43	97.92	U6 snRNA-associated Sm-like protein LSm3 OS=Glycine soja OX=3848 GN=LSM3 PE=3 SV...	[more]
C6SWG5	2.1e-43	97.92	U6 snRNA-associated Sm-like protein LSm3 OS=Glycine max OX=3847 GN=100499782 PE=...	[more]
A0A1S3UK26	2.1e-43	97.92	U6 snRNA-associated Sm-like protein LSm3 OS=Vigna radiata var. radiata OX=3916 G...	[more]
A0A151RN45	2.1e-43	97.92	U6 snRNA-associated Sm-like protein LSm3 OS=Cajanus cajan OX=3821 GN=LSM3 PE=3 S...	[more]
A0A2P5DSG3	2.1e-43	97.92	U6 snRNA-associated Sm-like protein LSm3 OS=Parasponia andersonii OX=3476 GN=LSM...	[more]

BLAST of Sed0019016 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21190.1	3.6e-43	85.42	Small nuclear ribonucleoprotein family protein	[more]
AT1G76860.1	1.4e-42	87.50	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.1	4.1e-07	32.97	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.2	4.1e-07	32.97	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.3	4.1e-07	32.97	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 14..84 e-value: 2.9E-9 score: 46.8
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 16..60 e-value: 2.3E-14 score: 52.8
None	No IPR available	GENE3D	2.30.30.100		coord: 2..82 e-value: 5.5E-20 score: 73.0
None	No IPR available	PANTHER	PTHR13110:SF9	SM-LIKE PROTEIN LSM3A	coord: 1..73
IPR040002	U6 snRNA-associated Sm-like protein Lsm3	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 1..73
IPR034105	Sm-like protein Lsm3	CDD	cd01730	LSm3	coord: 11..72 e-value: 7.9229E-39 score: 122.719
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 10..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019016.1	Sed0019016.1	mRNA
Sed0019016.2	Sed0019016.2	mRNA
Sed0019016.3	Sed0019016.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0033962	P-body assembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0000932	P-body
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding