Sed0019012 (gene) Chayote v1

Overview


Name	Sed0019012
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CLAVATA3/ESR (CLE)-related protein 45
Location	LG01: 17706886 .. 17707325 (+)
RNA-Seq Expression	Sed0019012
Synteny	Sed0019012

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCTTCTTACAACAATGAGCCATCCTAAACTTTGGCTCTGCATATATCACAGACATCCTTCTCCACCTCCTTATCCCCTCTTCATTGAGTACAAAGTTACATCCTTCTTCCAGTTTTAAAGTATAAATGGGGTTTTTTATTCAAAGGGTGGCCATGCTACTTCTCTGCATTGGAATTTTGGCCCTTCAACCAGAGGGAACCAGTGGGTTGACCAACATTGATCTAGCTCTCAGATGGAATAAACCAAACATTCCCATTTTCAATAGCTTCAAGCTTGGCACTTTCAATAGCTTCAAGTTTGTGAAGGATGTACCAATAGAGGACGACTGGCAGAGTACACTGGCTTTTGCACCGGCGCCTTCAATGGGTTCCGATTCTACTCAATTGAATAAAAGAAGGATTCGAAGAGGATTTGATCCCATTCACAACAAATGTTGA

mRNA sequence

GTTTCTTCTTACAACAATGAGCCATCCTAAACTTTGGCTCTGCATATATCACAGACATCCTTCTCCACCTCCTTATCCCCTCTTCATTGAGTACAAAGTTACATCCTTCTTCCAGTTTTAAAGTATAAATGGGGTTTTTTATTCAAAGGGTGGCCATGCTACTTCTCTGCATTGGAATTTTGGCCCTTCAACCAGAGGGAACCAGTGGGTTGACCAACATTGATCTAGCTCTCAGATGGAATAAACCAAACATTCCCATTTTCAATAGCTTCAAGCTTGGCACTTTCAATAGCTTCAAGTTTGTGAAGGATGTACCAATAGAGGACGACTGGCAGAGTACACTGGCTTTTGCACCGGCGCCTTCAATGGGTTCCGATTCTACTCAATTGAATAAAAGAAGGATTCGAAGAGGATTTGATCCCATTCACAACAAATGTTGA

Coding sequence (CDS)

ATGGGGTTTTTTATTCAAAGGGTGGCCATGCTACTTCTCTGCATTGGAATTTTGGCCCTTCAACCAGAGGGAACCAGTGGGTTGACCAACATTGATCTAGCTCTCAGATGGAATAAACCAAACATTCCCATTTTCAATAGCTTCAAGCTTGGCACTTTCAATAGCTTCAAGTTTGTGAAGGATGTACCAATAGAGGACGACTGGCAGAGTACACTGGCTTTTGCACCGGCGCCTTCAATGGGTTCCGATTCTACTCAATTGAATAAAAGAAGGATTCGAAGAGGATTTGATCCCATTCACAACAAATGTTGA

Protein sequence

MGFFIQRVAMLLLCIGILALQPEGTSGLTNIDLALRWNKPNIPIFNSFKLGTFNSFKFVKDVPIEDDWQSTLAFAPAPSMGSDSTQLNKRRIRRGFDPIHNKC

Homology

[Close]

BLAST of Sed0019012 vs. NCBI nr
Match: KGN64003.1 (hypothetical protein Csa_013092 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-33
Identity = 76/103 (73.79%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1   MGFFIQRVAMLLLCIGILALQPEGTSGLTNIDLALRWNKPNIPIFNSFKLGTFNSFKFVK 60
           MGF I RV MLLLCI  LALQPEGT+GLTNIDLALRW+K +IPI        FNSFKFVK
Sbjct: 1   MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPI--------FNSFKFVK 60

Query: 61  DVPIEDDWQSTLAFAPAPSMGSDSTQLNKRRIRRGFDPIHNKC 104
           DV +EDDW   LAFAPAPS G D TQLNKRR+RRG DPIHNKC
Sbjct: 61  DVSVEDDWGRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95

[Close]

BLAST of Sed0019012 vs. NCBI nr
Match: KAA0036085.1 (CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYJ98893.1 CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 4.3e-33
Identity = 76/103 (73.79%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1   MGFFIQRVAMLLLCIGILALQPEGTSGLTNIDLALRWNKPNIPIFNSFKLGTFNSFKFVK 60
           MGF I RVAMLLLCI  LALQPEGT+GLTNIDLALRW+K +IPI        F+SFKFVK
Sbjct: 1   MGFLIHRVAMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPI--------FSSFKFVK 60

Query: 61  DVPIEDDWQSTLAFAPAPSMGSDSTQLNKRRIRRGFDPIHNKC 104
           D  +EDDW   LAFAPAPS G D TQLNKRRIRRG DPIHNKC
Sbjct: 61  DASVEDDWGGMLAFAPAPSTGLDPTQLNKRRIRRGSDPIHNKC 95

[Close]

BLAST of Sed0019012 vs. NCBI nr
Match: KAG6584463.1 (hypothetical protein SDJN03_20395, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.7 bits (335), Expect = 9.4e-28
Identity = 66/94 (70.21%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 10  MLLLCIGILALQPEGTSGLTNIDLALRWNKPNIPIFNSFKLGTFNSFKFVKDVPIEDDWQ 69
           MLLLC+  L LQPEGTSGL+NIDLALRW+K  IPI        FNSFKFVK+  +EDDW 
Sbjct: 1   MLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPI--------FNSFKFVKEASVEDDWG 60

Query: 70  STLAFAPAPSMGSDSTQLNKRRIRRGFDPIHNKC 104
            TLAFAPAP  G D T+LNKRRIRRG DPIHNKC
Sbjct: 61  RTLAFAPAPLTGFDPTRLNKRRIRRGSDPIHNKC 86

[Close]

BLAST of Sed0019012 vs. NCBI nr
Match: KAG6607448.1 (E3 ubiquitin-protein ligase MARCHF9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.3 bits (329), Expect = 4.7e-27
Identity = 67/97 (69.07%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 7   RVAMLLLCIGILALQPEGTSGLTNIDLALRWNKPNIPIFNSFKLGTFNSFKFVKDVPIED 66
           +VA LLLCIGILALQ +GT+GLTNI LALRW+K NIPI NSFKL             ++D
Sbjct: 328 KVANLLLCIGILALQSQGTNGLTNIVLALRWDKLNIPISNSFKL-------------VKD 387

Query: 67  DWQSTLAFAPAPSMGSDSTQLNKRRIRRGFDPIHNKC 104
           DW+ TLAFAPAPSMG D T+LNKRRIRRG DPIHNKC
Sbjct: 388 DWRGTLAFAPAPSMGFDPTRLNKRRIRRGSDPIHNKC 411

[Close]

BLAST of Sed0019012 vs. NCBI nr
Match: KAG7037105.1 (hypothetical protein SDJN02_00726, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 54/81 (66.67%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 23  EGTSGLTNIDLALRWNKPNIPIFNSFKLGTFNSFKFVKDVPIEDDWQSTLAFAPAPSMGS 82
           +GT+GLTNI LALRW+K NIPI NSFKL             ++DDW+ TLAFAPAPSMG 
Sbjct: 19  QGTNGLTNIVLALRWDKLNIPISNSFKL-------------VKDDWRGTLAFAPAPSMGF 78

Query: 83  DSTQLNKRRIRRGFDPIHNKC 104
           D T+LNKRRIRRG DPIHNKC
Sbjct: 79  DPTRLNKRRIRRGSDPIHNKC 86

[Close]

BLAST of Sed0019012 vs. ExPASy TrEMBL
Match: A0A0A0LQI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033220 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.4e-34
Identity = 76/103 (73.79%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1   MGFFIQRVAMLLLCIGILALQPEGTSGLTNIDLALRWNKPNIPIFNSFKLGTFNSFKFVK 60
           MGF I RV MLLLCI  LALQPEGT+GLTNIDLALRW+K +IPI        FNSFKFVK
Sbjct: 1   MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPI--------FNSFKFVK 60

Query: 61  DVPIEDDWQSTLAFAPAPSMGSDSTQLNKRRIRRGFDPIHNKC 104
           DV +EDDW   LAFAPAPS G D TQLNKRR+RRG DPIHNKC
Sbjct: 61  DVSVEDDWGRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95

[Close]

BLAST of Sed0019012 vs. ExPASy TrEMBL
Match: A0A5D3BHX9 (CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00900 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.1e-33
Identity = 76/103 (73.79%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1   MGFFIQRVAMLLLCIGILALQPEGTSGLTNIDLALRWNKPNIPIFNSFKLGTFNSFKFVK 60
           MGF I RVAMLLLCI  LALQPEGT+GLTNIDLALRW+K +IPI        F+SFKFVK
Sbjct: 1   MGFLIHRVAMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPI--------FSSFKFVK 60

Query: 61  DVPIEDDWQSTLAFAPAPSMGSDSTQLNKRRIRRGFDPIHNKC 104
           D  +EDDW   LAFAPAPS G D TQLNKRRIRRG DPIHNKC
Sbjct: 61  DASVEDDWGGMLAFAPAPSTGLDPTQLNKRRIRRGSDPIHNKC 95

[Close]

BLAST of Sed0019012 vs. ExPASy TrEMBL
Match: M5WYZ5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.3e-18
Identity = 53/103 (51.46%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 1   MGFFIQRVAMLLLCIGILALQPEGTSGLTNIDLALRWNKPNIPIFNSFKLGTFNSFKFVK 60
           MGF   R A+L +CIG LALQPE  SGL ++DLALRW+K ++    S  L        VK
Sbjct: 1   MGFLAYRSAVLFVCIGFLALQPEKVSGLRSMDLALRWDKGHMSFLKSLHL--------VK 60

Query: 61  DVPIEDDWQSTLAFAPAPSMGSDSTQLNKRRIRRGFDPIHNKC 104
            V +E D Q+ L+ APAPSM  D  Q NKR++R+G DPIHN+C
Sbjct: 61  AVAVE-DLQAKLSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94

[Close]

BLAST of Sed0019012 vs. ExPASy TrEMBL
Match: A0A314XM06 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_31163 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.3e-18
Identity = 53/103 (51.46%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 1   MGFFIQRVAMLLLCIGILALQPEGTSGLTNIDLALRWNKPNIPIFNSFKLGTFNSFKFVK 60
           MGF   R A+L +CIG LALQPE  SGL ++DLALRW+K ++    S  L        VK
Sbjct: 1   MGFLAYRSAVLFVCIGFLALQPEKVSGLRSMDLALRWDKGHMSFLKSLHL--------VK 60

Query: 61  DVPIEDDWQSTLAFAPAPSMGSDSTQLNKRRIRRGFDPIHNKC 104
            V +E D Q+ L+ APAPSM  D  Q NKR++R+G DPIHN+C
Sbjct: 61  AVAVE-DLQAKLSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94

[Close]

BLAST of Sed0019012 vs. ExPASy TrEMBL
Match: A0A2P6P2N1 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 1   MGFFIQRVAMLLLCIGILALQPEGTSGLTNIDLALRWNKPNIPIFNSFKLGTFNSFKFVK 60
           MG    + A+LL+CIG LALQPE  SGL ++DLALRW+K +    NS  +        VK
Sbjct: 1   MGCLAYKGAILLVCIGFLALQPEKVSGLRSMDLALRWDKRHFSFLNSLHV--------VK 60

Query: 61  DVPIEDDWQSTLAFAPAPSMGSDSTQLNKRRIRRGFDPIHNKC 104
            V +E D Q+ L+ APAP+M  D +Q NKR +R+G DPIHN+C
Sbjct: 61  AVAVE-DLQAKLSLAPAPAMTFDPSQSNKRTVRKGSDPIHNRC 94

The following BLAST results are available for this feature:

BLAST of Sed0019012 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64003.1	1.9e-33	73.79	hypothetical protein Csa_013092 [Cucumis sativus]	[more]
KAA0036085.1	4.3e-33	73.79	CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYJ98893.1 CLA...	[more]
KAG6584463.1	9.4e-28	70.21	hypothetical protein SDJN03_20395, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6607448.1	4.7e-27	69.07	E3 ubiquitin-protein ligase MARCHF9, partial [Cucurbita argyrosperma subsp. soro...	[more]
KAG7037105.1	1.1e-20	66.67	hypothetical protein SDJN02_00726, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0019012 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0019012 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQI0	9.4e-34	73.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033220 PE=4 SV=1	[more]
A0A5D3BHX9	2.1e-33	73.79	CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
M5WYZ5	7.3e-18	51.46	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1	[more]
A0A314XM06	7.3e-18	51.46	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_311...	[more]
A0A2P6P2N1	1.4e-16	49.51	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4...	[more]

BLAST of Sed0019012 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36726:SF5	CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11	coord: 1..103
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019012.1	Sed0019012.1	mRNA