Sed0018871 (gene) Chayote v1

Overview
NameSed0018871
Typegene
OrganismSechium edule (Chayote v1)
DescriptionArabinogalactan peptide 23-like
LocationLG03: 16747603 .. 16747791 (+)
RNA-Seq ExpressionSed0018871
SyntenySed0018871
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGAAGAAGTTAGCCGTTGCTGCCTTCATTGTTGTTTCAGCCTCTCTGGACATGGTTTTGGCCTCCAATGAAGCGGCAGCGCCTGCACCCGGCCCGTCAAGCAGCGCCTCCATTATCTTGCCCGGCGTCGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTGCATACTACCTTCAGTAA

mRNA sequence

ATGGAAATGAAGAAGTTAGCCGTTGCTGCCTTCATTGTTGTTTCAGCCTCTCTGGACATGGTTTTGGCCTCCAATGAAGCGGCAGCGCCTGCACCCGGCCCGTCAAGCAGCGCCTCCATTATCTTGCCCGGCGTCGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTGCATACTACCTTCAGTAA

Coding sequence (CDS)

ATGGAAATGAAGAAGTTAGCCGTTGCTGCCTTCATTGTTGTTTCAGCCTCTCTGGACATGGTTTTGGCCTCCAATGAAGCGGCAGCGCCTGCACCCGGCCCGTCAAGCAGCGCCTCCATTATCTTGCCCGGCGTCGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTGCATACTACCTTCAGTAA

Protein sequence

MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ
Homology
BLAST of Sed0018871 vs. NCBI nr
Match: KAA0035760.1 (arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 1  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYY 60
          MEMK  A AAFI V ASL MVLAS+EAA+PAPGPSS  S  LP VG  +GA+A +LIAY 
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

BLAST of Sed0018871 vs. NCBI nr
Match: KAE8649766.1 (hypothetical protein Csa_011936, partial [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 2.5e-07
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 7  AVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ 63
          A AAFI V+ASL MVLAS+EAA+PAPGPSS+AS  LP VG  +GA+A +LIAY LQ
Sbjct: 3  ACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 58

BLAST of Sed0018871 vs. NCBI nr
Match: PON91671.1 (hypothetical protein TorRG33x02_125020 [Trema orientale])

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-05
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 1  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYY 60
          ME+KK+++A  IV +ASL  V+A+NE  APAPGPSS AS  LP VG+ VGA+  +  AYY
Sbjct: 40 MELKKISIAV-IVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYY 99

Query: 61 L 62
          L
Sbjct: 100 L 99

BLAST of Sed0018871 vs. NCBI nr
Match: PON58107.1 (hypothetical protein PanWU01x14_168770 [Parasponia andersonii])

HSP 1 Score: 57.0 bits (136), Expect = 6.7e-05
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYY 60
          ME+KK++ A  IV +ASL  V+A+NE  APAPGPSS AS  LP VG+ VGA+  +  AYY
Sbjct: 40 MELKKISTAV-IVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYY 99

Query: 61 L 62
          L
Sbjct: 100 L 99

BLAST of Sed0018871 vs. NCBI nr
Match: KCW90250.1 (hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis])

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYY 60
          M+MKK++  A +V +AS+  VLAS+++ APAPGPSS AS  LP  G+ VGA+  +  AYY
Sbjct: 34 MDMKKIS-CAVLVAAASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYY 93

Query: 61 LQ 63
          LQ
Sbjct: 94 LQ 94

BLAST of Sed0018871 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 3.7e-06
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0

Query: 1  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYY 60
          MEMKK+A    +  +AS+  V+A+ E  APAPGP+S+AS  LP +G+ VGA+  +L +YY
Sbjct: 1  MEMKKIA-CGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

BLAST of Sed0018871 vs. ExPASy TrEMBL
Match: A0A5D3E271 (Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001050 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.3e-09
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 1  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYY 60
          MEMK  A AAFI V ASL MVLAS+EAA+PAPGPSS  S  LP VG  +GA+A +LIAY 
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

BLAST of Sed0018871 vs. ExPASy TrEMBL
Match: A0A2P5F1L3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_125020 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 1  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYY 60
          ME+KK+++A  IV +ASL  V+A+NE  APAPGPSS AS  LP VG+ VGA+  +  AYY
Sbjct: 40 MELKKISIAV-IVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYY 99

Query: 61 L 62
          L
Sbjct: 100 L 99

BLAST of Sed0018871 vs. ExPASy TrEMBL
Match: A0A2P5CAP7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYY 60
          ME+KK++ A  IV +ASL  V+A+NE  APAPGPSS AS  LP VG+ VGA+  +  AYY
Sbjct: 40 MELKKISTAV-IVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYY 99

Query: 61 L 62
          L
Sbjct: 100 L 99

BLAST of Sed0018871 vs. ExPASy TrEMBL
Match: A0A059DIY4 (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02403 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.5e-05
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYY 60
          M+MKK++  A +V +AS+  VLAS+++ APAPGPSS AS  LP  G+ VGA+  +  AYY
Sbjct: 34 MDMKKIS-CAVLVAAASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYY 93

Query: 61 LQ 63
          LQ
Sbjct: 94 LQ 94

BLAST of Sed0018871 vs. ExPASy TrEMBL
Match: A0A200QP69 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1779g40 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.5e-05
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 1  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYY 60
          M+MKK++ A  I V+AS++  LA++EA APAPGP+S+A   +P +G+ VGA+  +  A+Y
Sbjct: 1  MDMKKISCAVLIAVAASMNAALAADEAHAPAPGPASNAMTTMPVIGSLVGASLVSFFAFY 60

Query: 61 LQ 63
          +Q
Sbjct: 61 MQ 62

BLAST of Sed0018871 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 51.6 bits (122), Expect = 2.6e-07
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0

Query: 1  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYY 60
          MEMKK+A    +  +AS+  V+A+ E  APAPGP+S+AS  LP +G+ VGA+  +L +YY
Sbjct: 1  MEMKKIA-CGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

BLAST of Sed0018871 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 4.2e-05
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 1  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSS-ASIILPGVGAFVGAAATTLIAY 60
          MEMKK+A    +  +AS+  V+A+ E  APAPGP++S AS+ +P +G+ VGA+  +L AY
Sbjct: 1  MEMKKIA-CGVVFAAASMTAVMAA-EVGAPAPGPAASGASVAVPALGSLVGASLVSLFAY 60

Query: 61 YL 62
          YL
Sbjct: 61 YL 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0035760.11.7e-0867.74arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinoga... [more]
KAE8649766.12.5e-0769.64hypothetical protein Csa_011936, partial [Cucumis sativus][more]
PON91671.13.0e-0557.38hypothetical protein TorRG33x02_125020 [Trema orientale][more]
PON58107.16.7e-0557.38hypothetical protein PanWU01x14_168770 [Parasponia andersonii][more]
KCW90250.12.0e-0453.23hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis][more]
Match NameE-valueIdentityDescription
Q8S2W43.7e-0649.18Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A5D3E2718.3e-0967.74Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A2P5F1L31.5e-0557.38Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_125020 PE=4 SV... [more]
A0A2P5CAP73.2e-0557.38Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE... [more]
A0A059DIY49.5e-0553.23Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02... [more]
A0A200QP699.5e-0546.77Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1779g40 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G57690.12.6e-0749.18arabinogalactan protein 23 [more]
AT2G41905.14.2e-0548.39BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34672:SF10BNAANNG40690D PROTEINcoord: 1..61
IPR044702Arabinogalactan protein 23/40PANTHERPTHR34672POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0018871.1Sed0018871.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane