Sed0018739 (gene) Chayote v1

Overview


Name	Sed0018739
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L18-like
Location	LG02: 51145433 .. 51146829 (-)
RNA-Seq Expression	Sed0018739
Synteny	Sed0018739

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAGGTCAGAGTCGCCATCGTCATCCACTTCAGCTGTTCGATCCTTTCCCACATTAGTTTCAGGTTTCACTCAGAAACCCACTTCTCTTTCATGGCCCTCTTCTTCTTTTCCAAACCTCTCTGTCTCCGTCGACGCCATTAAACCGCCTTCTCTTTCTACGCAATATAGAGTACGTTCTCTGTCTTTTTACATATTTCTCTATATTTCTGCCAAAACAAATTTAAAAAAAAAACAATCAATTTCATGTAATACAATAGTGATTTCAAAGAATGATGGAAATTCTTCGAGACCCACCGGGATTACTTCTTCACGTTGCGGGATTTTGCAGCCATGGTGTTCGACGAAATGTCTAGTCCAAACTAGAATGATAATAATTGACTACAGTATTGGTTTAGCATAATTGAATGTAAAATGCTTGGCCCACCTTCAGCTGCCCTCATCTTTTTGTAGCATATAATCTAAATTTGACTAACTATTACTTGGAAGCACCTACAACTGCACCTGTCACAGAGCTTACACAGTGAGACCATAATAAATTTTATAATTTTTTTTTTTATGTCCGTGACCGTCCGACGAATGTCACGGGACATACCACCCTAGAACATGTGGATGTCAAGGAAATTTTACAATTAAATTTATTTGTAAGTTAACACCTCCAAGAAAATATACCTTTTAGACTCCAATTCTCTGTCAACAAGGCCACTCCTTGGAAACTGCATATTCATGTTGTTTGTAATGCGGCAAACTATTTGTTCTTTCTTTTAAATTTTTTCTACATTGGAGTGGGCTGCCCCAATAATTTTTATAGTTTTTGGTGTTGATAGATGATATATTTTTTTTATCTCGAACTCTTCCATGTATAGCTATATCAACATATTGATGGACACTTTCATCTTTGGTTAAGATACTGAAGTATGCAAGTTTTAGACCTGGATTGAATTTTAATTATAAAAGAAAAGTAGATTATCTAGCTTACGTGTCATGTTCGTTTTGCAGAAGTCCTTCATTCAAGCAGCCTGGACACGAAGATCTCGAGGAGAAGCTGCGAAAAGACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTGTTGGATGTTTTCTTTTCAAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGGAACATTCAAAGTGGTATCAGCAGCAAGTACCAATTCCAAGGATTTAAGGTATTCGTTGCCATCACCCACTGATGACAATGCCTGTCGGATTATTGGGAACCTGATTGCTGAGAGATGTAAAGAAGCTGATGTGTTTGTAATTTCTTATGAGCCTCCAAACAATGGAAGAATTGAAGGGAAAATTGGGATTGTCATTGATACCATTAAGGATAATGATATCATTTTCGTCTAG

mRNA sequence

ATGTTAAGGTCAGAGTCGCCATCGTCATCCACTTCAGCTGTTCGATCCTTTCCCACATTAGTTTCAGGTTTCACTCAGAAACCCACTTCTCTTTCATGGCCCTCTTCTTCTTTTCCAAACCTCTCTGTCTCCGTCGACGCCATTAAACCGCCTTCTCTTTCTACGCAATATAGAAAGTCCTTCATTCAAGCAGCCTGGACACGAAGATCTCGAGGAGAAGCTGCGAAAAGACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTGTTGGATGTTTTCTTTTCAAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGGAACATTCAAAGTGGTATCAGCAGCAAGTACCAATTCCAAGGATTTAAGGTATTCGTTGCCATCACCCACTGATGACAATGCCTGTCGGATTATTGGGAACCTGATTGCTGAGAGATGTAAAGAAGCTGATGTGTTTGTAATTTCTTATGAGCCTCCAAACAATGGAAGAATTGAAGGGAAAATTGGGATTGTCATTGATACCATTAAGGATAATGATATCATTTTCGTCTAG

Coding sequence (CDS)

ATGTTAAGGTCAGAGTCGCCATCGTCATCCACTTCAGCTGTTCGATCCTTTCCCACATTAGTTTCAGGTTTCACTCAGAAACCCACTTCTCTTTCATGGCCCTCTTCTTCTTTTCCAAACCTCTCTGTCTCCGTCGACGCCATTAAACCGCCTTCTCTTTCTACGCAATATAGAAAGTCCTTCATTCAAGCAGCCTGGACACGAAGATCTCGAGGAGAAGCTGCGAAAAGACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTGTTGGATGTTTTCTTTTCAAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGGAACATTCAAAGTGGTATCAGCAGCAAGTACCAATTCCAAGGATTTAAGGTATTCGTTGCCATCACCCACTGATGACAATGCCTGTCGGATTATTGGGAACCTGATTGCTGAGAGATGTAAAGAAGCTGATGTGTTTGTAATTTCTTATGAGCCTCCAAACAATGGAAGAATTGAAGGGAAAATTGGGATTGTCATTGATACCATTAAGGATAATGATATCATTTTCGTCTAG

Protein sequence

MLRSESPSSSTSAVRSFPTLVSGFTQKPTSLSWPSSSFPNLSVSVDAIKPPSLSTQYRKSFIQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIVIDTIKDNDIIFV

Homology

[Close]

BLAST of Sed0018739 vs. NCBI nr
Match: XP_022147050.1 (uncharacterized protein LOC111016081 [Momordica charantia])

HSP 1 Score: 288.5 bits (737), Expect = 4.2e-74
Identity = 150/185 (81.08%), Postives = 160/185 (86.49%), Query Frame = 0


Query: 5   ESPSSSTSAVRSFPTLVSGFTQKPTSLSWPSSSFPNLSVSVDAIKPPSLSTQYRKSFIQA 64
           E  SSS SA+R    L++GF QKPTSLSWP SSFP L +S DAI  P  ST  R SFI+A
Sbjct: 8   EPLSSSASALRPSARLLTGFIQKPTSLSWP-SSFPKLCISFDAIAAPPFSTHDRNSFIRA 67

Query: 65  AWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVSAASTN 124
           AWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHR T KVVSAASTN
Sbjct: 68  AWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTN 127

Query: 125 SKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIVIDTIKDN 184
           SKDLRYSLPSPTDDNACRIIGN+IAERCKEADVFV+SYEPP + RIEGKI IVIDTIK+N
Sbjct: 128 SKDLRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKEN 187

Query: 185 DIIFV 190
            I+FV
Sbjct: 188 GILFV 191

[Close]

BLAST of Sed0018739 vs. NCBI nr
Match: XP_038905466.1 (50S ribosomal protein L18-like [Benincasa hispida])

HSP 1 Score: 283.9 bits (725), Expect = 1.0e-72
Identity = 152/191 (79.58%), Postives = 164/191 (85.86%), Query Frame = 0


Query: 1   MLRSESP--SSSTSAVRSFPTLVSGFTQKPTSLSWPSSSFPNLSVSVDAIKPPSLSTQYR 60
           ML +  P  SSS SA R   TL+SGF QKPTSLSWP SSF  LS+S  AIK PSLST +R
Sbjct: 1   MLSTSIPESSSSASAFRPTATLLSGFIQKPTSLSWP-SSFSKLSISFVAIKAPSLSTHHR 60

Query: 61  KSFIQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVV 120
           KS IQ+AWTRRSRGEAAKR NRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHRGT KVV
Sbjct: 61  KSLIQSAWTRRSRGEAAKRGNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 120

Query: 121 SAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIVI 180
           SAASTN KDLRYSL SPTD+NACRIIGNLIAERCKEADVFV+SY+PP+  RI+GKIGIVI
Sbjct: 121 SAASTNCKDLRYSLLSPTDENACRIIGNLIAERCKEADVFVMSYDPPDMERIQGKIGIVI 180

Query: 181 DTIKDNDIIFV 190
           DTIK N I+FV
Sbjct: 181 DTIKKNGILFV 190

[Close]

BLAST of Sed0018739 vs. NCBI nr
Match: XP_023540956.1 (uncharacterized protein LOC111801186 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 274.2 bits (700), Expect = 8.2e-70
Identity = 148/185 (80.00%), Postives = 156/185 (84.32%), Query Frame = 0


Query: 6   SPSSSTSAVRSFPTLVSGFTQKP-TSLSWPSSSFPNLSVSVDAIKPPSLSTQYRKSFIQA 65
           SPS S S      TL+SGF QKP TSLSWP SSF  LS+   AIKPPS ST  R S IQA
Sbjct: 11  SPSWSASLHPPSATLLSGFIQKPTTSLSWP-SSFSKLSI---AIKPPSPSTHNRNSIIQA 70

Query: 66  AWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVSAASTN 125
           AWTRRSRGE +KRPNRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHRGT KVVSAASTN
Sbjct: 71  AWTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 130

Query: 126 SKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIVIDTIKDN 185
            KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISY+PP + +IEGKI IVID IKDN
Sbjct: 131 CKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDN 190

Query: 186 DIIFV 190
            I+FV
Sbjct: 191 GILFV 191

[Close]

BLAST of Sed0018739 vs. NCBI nr
Match: XP_022937699.1 (uncharacterized protein LOC111444022 [Cucurbita moschata])

HSP 1 Score: 273.5 bits (698), Expect = 1.4e-69
Identity = 149/192 (77.60%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 2   LRSESPSSSTSAVRSFP---TLVSGFTQKP-TSLSWPSSSFPNLSVSVDAIKPPSLSTQY 61
           L S  P SS+ +    P   TL+SGF QKP TSLSWP SSF  LS+   AIKPPS ST  
Sbjct: 4   LSSSIPGSSSWSASVHPPSATLLSGFIQKPTTSLSWP-SSFSKLSI---AIKPPSPSTHN 63

Query: 62  RKSFIQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKV 121
           R S IQAAWTRRSRGE +KRPNRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHRGT KV
Sbjct: 64  RNSIIQAAWTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 123

Query: 122 VSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIV 181
           VSAASTN KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISY+PP + +IEGKI IV
Sbjct: 124 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIV 183

Query: 182 IDTIKDNDIIFV 190
           ID IKDN I+FV
Sbjct: 184 IDAIKDNGILFV 191

[Close]

BLAST of Sed0018739 vs. NCBI nr
Match: XP_022974979.1 (uncharacterized protein LOC111473828 [Cucurbita maxima])

HSP 1 Score: 273.5 bits (698), Expect = 1.4e-69
Identity = 147/184 (79.89%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 6   SPSSSTSAVRSFPTLVSGFTQKPTSLSWPSSSFPNLSVSVDAIKPPSLSTQYRKSFIQAA 65
           SPS S S      TL+SGF QKPTSLSWP SSF  LS+   AIKPP  ST  R S IQAA
Sbjct: 11  SPSWSASLHPPSATLLSGFIQKPTSLSWP-SSFSKLSI---AIKPPP-STHNRNSIIQAA 70

Query: 66  WTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVSAASTNS 125
           WTRRSRGE +KRPNRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHRGT KVVSAASTN 
Sbjct: 71  WTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNC 130

Query: 126 KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIVIDTIKDND 185
           KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISY+PP + +IEGKI IVID IKDN 
Sbjct: 131 KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNG 189

Query: 186 IIFV 190
           I+FV
Sbjct: 191 ILFV 189

[Close]

BLAST of Sed0018739 vs. ExPASy Swiss-Prot
Match: Q5P316 (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.1e-04
Identity = 32/96 (33.33%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 68  RRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVSAASTNSKD 127
           RR+R   AK    KS +           L VF +   I+A+V+     +V++AAST   D
Sbjct: 9   RRARKTRAKIAELKSVR-----------LTVFRTNSHIYAQVIDGSGSRVLAAASTVEAD 68

Query: 128 LRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYE 164
           +R  LP+  +  A +++G LIAER K A V  ++++
Sbjct: 69  VRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFD 93

[Close]

BLAST of Sed0018739 vs. ExPASy Swiss-Prot
Match: A9BG02 (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=403833 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.1e-04
Identity = 31/121 (25.62%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 76  KRPNRKSWKQRTDMYMRPFV--------LDVFFSRRFIHAKVMHRGTFKVVSAASTNSKD 135
           K+ ++K+ +Q+  + +R  V        L VF S++ I+A+++       +++AST  K 
Sbjct: 3   KQLDKKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQ 62

Query: 136 LRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIVIDTIKDNDII 189
           L+  L    D+NA + +G LIAE+ KE  +  I ++  +  +  GK+  + +  ++  + 
Sbjct: 63  LKEKLEKTWDENAAKEVGKLIAEKAKEKGITEIVFD-RSGYKYHGKVKALAEAARETGLK 122

[Close]

BLAST of Sed0018739 vs. ExPASy Swiss-Prot
Match: B5ZYV1 (50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) OX=395492 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.1e-04
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 0


Query: 70  SRGEA-AKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVSAASTNSKDL 129
           SR EA A+R NR     ++    RP  L V  S + I+A+V+     K ++AAST  KDL
Sbjct: 3   SRKEALARRANRVRRHLKSVANGRP-RLSVHRSSKNIYAQVIDDVAGKTLAAASTLDKDL 62

Query: 130 RYSLPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRI--EGKIGIVIDTIKDNDI 189
           R SL +  D  A  ++G L+AER  +A V  + ++    G     G+I  + D  ++  +
Sbjct: 63  RGSLKTGADTAAAALVGKLVAERASKAGVTDVVFD---RGAFIYHGRIKALADAAREGGL 120

[Close]

BLAST of Sed0018739 vs. ExPASy Swiss-Prot
Match: A5FZU9 (50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplR PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.6e-04
Identity = 30/89 (33.71%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 75  AKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVSAASTNSKDLRYSLPS 134
           A+R  R  ++ R   + RP  L VF S + I+A+V+     + ++AAS+    LR +L +
Sbjct: 9   ARRRQRLRYQIRLKAHGRP-RLSVFRSGKHIYAQVIDDAAGRTLAAASSLDAGLRSALKT 68

Query: 135 PTDDNACRIIGNLIAERCKEADVFVISYE 164
             D  A   +G L+AER KEA V  + ++
Sbjct: 69  GADKAAAAAVGKLVAERAKEAGVTQVVFD 96

[Close]

BLAST of Sed0018739 vs. ExPASy Swiss-Prot
Match: B7L0T4 (50S ribosomal protein L18 OS=Methylorubrum extorquens (strain CM4 / NCIMB 13688) OX=440085 GN=rplR PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.7e-04
Identity = 29/94 (30.85%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 96  LDVFFSRRFIHAKVMHRGTFKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEA 155
           L VF S + I+ +V+     + ++AAS+  KDL+ SL +  D  A   +G L+AER K A
Sbjct: 29  LSVFRSSKQIYVQVIDDAAGRTLAAASSLDKDLKSSLKTGADKAAAEAVGKLVAERAKAA 88

Query: 156 DVFVISYEPPNNGRI-EGKIGIVIDTIKDNDIIF 189
            V  + ++   +G I  G++  + D  ++  + F
Sbjct: 89  GVTKVVFD--RSGYIFHGRVKALADAAREGGLDF 120

[Close]

BLAST of Sed0018739 vs. ExPASy TrEMBL
Match: A0A6J1CZ23 (uncharacterized protein LOC111016081 OS=Momordica charantia OX=3673 GN=LOC111016081 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.0e-74
Identity = 150/185 (81.08%), Postives = 160/185 (86.49%), Query Frame = 0


Query: 5   ESPSSSTSAVRSFPTLVSGFTQKPTSLSWPSSSFPNLSVSVDAIKPPSLSTQYRKSFIQA 64
           E  SSS SA+R    L++GF QKPTSLSWP SSFP L +S DAI  P  ST  R SFI+A
Sbjct: 8   EPLSSSASALRPSARLLTGFIQKPTSLSWP-SSFPKLCISFDAIAAPPFSTHDRNSFIRA 67

Query: 65  AWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVSAASTN 124
           AWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHR T KVVSAASTN
Sbjct: 68  AWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTN 127

Query: 125 SKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIVIDTIKDN 184
           SKDLRYSLPSPTDDNACRIIGN+IAERCKEADVFV+SYEPP + RIEGKI IVIDTIK+N
Sbjct: 128 SKDLRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKEN 187

Query: 185 DIIFV 190
            I+FV
Sbjct: 188 GILFV 191

[Close]

BLAST of Sed0018739 vs. ExPASy TrEMBL
Match: A0A6J1IJ40 (uncharacterized protein LOC111473828 OS=Cucurbita maxima OX=3661 GN=LOC111473828 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 6.7e-70
Identity = 147/184 (79.89%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 6   SPSSSTSAVRSFPTLVSGFTQKPTSLSWPSSSFPNLSVSVDAIKPPSLSTQYRKSFIQAA 65
           SPS S S      TL+SGF QKPTSLSWP SSF  LS+   AIKPP  ST  R S IQAA
Sbjct: 11  SPSWSASLHPPSATLLSGFIQKPTSLSWP-SSFSKLSI---AIKPPP-STHNRNSIIQAA 70

Query: 66  WTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVSAASTNS 125
           WTRRSRGE +KRPNRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHRGT KVVSAASTN 
Sbjct: 71  WTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNC 130

Query: 126 KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIVIDTIKDND 185
           KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISY+PP + +IEGKI IVID IKDN 
Sbjct: 131 KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNG 189

Query: 186 IIFV 190
           I+FV
Sbjct: 191 ILFV 189

[Close]

BLAST of Sed0018739 vs. ExPASy TrEMBL
Match: A0A6J1FBY3 (uncharacterized protein LOC111444022 OS=Cucurbita moschata OX=3662 GN=LOC111444022 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 6.7e-70
Identity = 149/192 (77.60%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 2   LRSESPSSSTSAVRSFP---TLVSGFTQKP-TSLSWPSSSFPNLSVSVDAIKPPSLSTQY 61
           L S  P SS+ +    P   TL+SGF QKP TSLSWP SSF  LS+   AIKPPS ST  
Sbjct: 4   LSSSIPGSSSWSASVHPPSATLLSGFIQKPTTSLSWP-SSFSKLSI---AIKPPSPSTHN 63

Query: 62  RKSFIQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKV 121
           R S IQAAWTRRSRGE +KRPNRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHRGT KV
Sbjct: 64  RNSIIQAAWTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 123

Query: 122 VSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIV 181
           VSAASTN KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISY+PP + +IEGKI IV
Sbjct: 124 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIV 183

Query: 182 IDTIKDNDIIFV 190
           ID IKDN I+FV
Sbjct: 184 IDAIKDNGILFV 191

[Close]

BLAST of Sed0018739 vs. ExPASy TrEMBL
Match: A0A1S3AVM4 (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 9.7e-69
Identity = 145/190 (76.32%), Postives = 160/190 (84.21%), Query Frame = 0


Query: 1   MLRSESPSSSTSAVRSFPTLVSGFTQKPTSLSWPSSSFPNLSVSVDAIKPPSLSTQYRKS 60
           +L +  P SS+SA     TL+S F QKPTS SW SSSF  LS+S DAIK PSLST   KS
Sbjct: 2   LLSTSIPESSSSA-----TLLSSFLQKPTSSSW-SSSFSKLSISFDAIKAPSLSTHNTKS 61

Query: 61  FIQ-AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVS 120
            I+ AAWTRRSRGEAAKR N+KSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHRGT KVVS
Sbjct: 62  LIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVS 121

Query: 121 AASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIVID 180
           AASTN KDLRYSLPSP+DDNACRIIGNLIAERCKEADVF +SY+PP+  RI+ K+GIVID
Sbjct: 122 AASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVID 181

Query: 181 TIKDNDIIFV 190
           TIK+N IIFV
Sbjct: 182 TIKENGIIFV 185

[Close]

BLAST of Sed0018739 vs. ExPASy TrEMBL
Match: A0A0A0L7S5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127780 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.2e-68
Identity = 145/190 (76.32%), Postives = 158/190 (83.16%), Query Frame = 0


Query: 1   MLRSESPSSSTSAVRSFPTLVSGFTQKPTSLSWPSSSFPNLSVSVDAIKPPSLSTQYRKS 60
           +L +  P SS+SA     TLVS F  KPTS SW SSSF  LS+S DAIK PSLST   K 
Sbjct: 2   LLSTSIPESSSSAA----TLVSSFLHKPTSSSW-SSSFSKLSISFDAIKAPSLSTHNTKF 61

Query: 61  FIQ-AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVS 120
            I+ AAWTRRSRGEAAKR N+KSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHRGT KVVS
Sbjct: 62  LIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVS 121

Query: 121 AASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIVID 180
           AASTN KDLRYSLPSPTDDNACRIIGNLIAERCKEADVF +SY+PP+  RI+ K+GIVID
Sbjct: 122 AASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVID 181

Query: 181 TIKDNDIIFV 190
           TIK+N IIFV
Sbjct: 182 TIKENGIIFV 186

[Close]

BLAST of Sed0018739 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 210.3 bits (534), Expect = 1.3e-54
Identity = 112/184 (60.87%), Postives = 142/184 (77.17%), Query Frame = 0


Query: 9   SSTSAVRSFP---TLVSGFTQKPTSLSWPSSSFPNLSVSVDAIKPPSLSTQYRKSFIQAA 68
           SST ++  F    T  + FT+  +++SW  SSFP LS+ + ++   S     + SF+QAA
Sbjct: 6   SSTCSLVPFDSNLTRSNRFTKLGSAVSW-QSSFPKLSIEIGSV--ISSPIVKKDSFVQAA 65

Query: 69  WTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVSAASTNS 128
           WTRRSRGEAAKRPNRKSWKQRTDMYMRPF+L+VFFSR+FIHAKVMHR T KV+S A+TN+
Sbjct: 66  WTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNA 125

Query: 129 KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIVIDTIKDND 188
           +D+R ++PS  D+ ACR+IG LIAER  EADV+ +SYEP    RIEGK+GIVIDTIK++ 
Sbjct: 126 RDIRTNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHG 185

Query: 189 IIFV 190
           IIFV
Sbjct: 186 IIFV 186

[Close]

BLAST of Sed0018739 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.0e-22
Identity = 54/113 (47.79%), Postives = 74/113 (65.49%), Query Frame = 0


Query: 75  AKRPNRK-SWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVSAASTNSKDLRYSLP 134
           +K P++  S+KQRT  YM PF LDVF S+RF+ A + HR T + V+ A TNSKD++  L 
Sbjct: 70  SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 129

Query: 135 SPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIVIDTIKDNDI 187
           S  D  AC  IG +++ER KEADV+  SY P +  + EGKI  V+ ++ DN I
Sbjct: 130 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 182

[Close]

BLAST of Sed0018739 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.0e-22
Identity = 54/113 (47.79%), Postives = 74/113 (65.49%), Query Frame = 0


Query: 75  AKRPNRK-SWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVSAASTNSKDLRYSLP 134
           +K P++  S+KQRT  YM PF LDVF S+RF+ A + HR T + V+ A TNSKD++  L 
Sbjct: 115 SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 174

Query: 135 SPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIVIDTIKDNDI 187
           S  D  AC  IG +++ER KEADV+  SY P +  + EGKI  V+ ++ DN I
Sbjct: 175 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of Sed0018739 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 78.6 bits (192), Expect = 6.1e-15
Identity = 41/115 (35.65%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 73  EAAKRPNRK-SWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRGTFKVVSAASTNSKDLRYS 132
           EA K+  R  ++ Q T  +  PF LD++ S+  + A V+HR T KVV+ A + SKD+++ 
Sbjct: 176 EAVKKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFD 235

Query: 133 LPSPTDDNACRIIGNLIAERCKEADVFVISYEPPNNGRIEGKIGIVIDTIKDNDI 187
           L S  +  AC  +G ++A+R  E D+  + Y P    +IEGK+ +V+  + DN +
Sbjct: 236 LGSRRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]

BLAST of Sed0018739 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 30/94 (31.91%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 90  YMRPFVLDVFFSRRFIHAKVMHRGTFKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIA 149
           Y++P+VL + F+ +F+HA+V+H  T  V  +AS+  K LR ++    D  A   IG ++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 150 ERCKEADVFVISYEPPNNGRIEGKIGIVIDTIKD 184
           ER    D+  ++ +     R  GK+  VID++++
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVRE 108

The following BLAST results are available for this feature:

BLAST of Sed0018739 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147050.1	4.2e-74	81.08	uncharacterized protein LOC111016081 [Momordica charantia]	[more]
XP_038905466.1	1.0e-72	79.58	50S ribosomal protein L18-like [Benincasa hispida]	[more]
XP_023540956.1	8.2e-70	80.00	uncharacterized protein LOC111801186 [Cucurbita pepo subsp. pepo]	[more]
XP_022937699.1	1.4e-69	77.60	uncharacterized protein LOC111444022 [Cucurbita moschata]	[more]
XP_022974979.1	1.4e-69	79.89	uncharacterized protein LOC111473828 [Cucurbita maxima]	[more]

BLAST of Sed0018739 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5P316	2.1e-04	33.33	50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rp...	[more]
A9BG02	2.1e-04	25.62	50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=4038...	[more]
B5ZYV1	2.1e-04	33.61	50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM230...	[more]
A5FZU9	3.6e-04	33.71	50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rpl...	[more]
B7L0T4	4.7e-04	30.85	50S ribosomal protein L18 OS=Methylorubrum extorquens (strain CM4 / NCIMB 13688)...	[more]

BLAST of Sed0018739 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CZ23	2.0e-74	81.08	uncharacterized protein LOC111016081 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1IJ40	6.7e-70	79.89	uncharacterized protein LOC111473828 OS=Cucurbita maxima OX=3661 GN=LOC111473828...	[more]
A0A6J1FBY3	6.7e-70	77.60	uncharacterized protein LOC111444022 OS=Cucurbita moschata OX=3662 GN=LOC1114440...	[more]
A0A1S3AVM4	9.7e-69	76.32	50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1	[more]
A0A0A0L7S5	2.2e-68	76.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127780 PE=4 SV=1	[more]

BLAST of Sed0018739 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20230.1	1.3e-54	60.87	Ribosomal L18p/L5e family protein	[more]
AT1G08845.1	1.0e-22	47.79	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	1.0e-22	47.79	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	6.1e-15	35.65	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	1.2e-10	31.91	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 88..184 e-value: 2.0E-6 score: 28.1
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 22..188
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 53..189 e-value: 7.8E-15 score: 57.0
None	No IPR available	PANTHER	PTHR12899:SF16	OS02G0689700 PROTEIN	coord: 22..188
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 83..184 e-value: 2.50249E-17 score: 71.8023
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 84..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018739.1	Sed0018739.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome