Sed0018708 (gene) Chayote v1

Overview
NameSed0018708
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG03: 1591257 .. 1592380 (+)
RNA-Seq ExpressionSed0018708
SyntenySed0018708
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACATAAACTTTGAAACAAAAAAAGAAAAAGAGAAAGAATAAGCCAAAGCAAAAGCACAAAAGCAAAACCATAATGGAGAGAAAGAGCAACATTCCCCCATGAAAAATATTGAGTCAAACTCACATTTCCATCTAGAATCTTAGACTACTCGGTTCATTACCAATTAATTTTGAAATAGTTGCTACAACCTCGTTTGATAACGATTTTGTTTCTATTTGTTGACCGGTGGCCACTATAAGTAACACAGCTTCCCATTCCATCAACAAAGCACCCTCTGAGTAAAGCTTGAAAGAAAAAGAAAGAGGAAGAAATGGGTCGTGGTCGTTTTCTGTGGGAAGTAGCAGTGGCAGTGCTGCTGGTAAGCGCGATCCTTTGTTCGAACAAATGCGAAGCAGCAGCGATGGGGGTGGCTCGGGGAGGTAGCTACGGCGGAAACATGGCGTTGGAGTTGATGATGGTGGGCAGCCAAGTTGATATATTTCCTCTGCTACCTCGGTTTCGCGACTTTGAAGGAGACAAAGTCATAACAGACCAAACCAGCAACCAGAATGCCAGTTCTTGTAACAACGGGGCCGGAAACCAAAACGGCGCCTGCGGCGGCACTGCTAGTAACACACAAGACTGCAACAAATATGCCAACAATGGCCCCTGTCCTGCTTAGCCTTTAACCTACATTCCCACTGTTTCTGTGTATGTTGTTTGTTTAATCATTTCTCTGTTTCTCTGTTTTGTGTTTCTTATGATGTGGTCCTCTGTTTATTGTGGAGTTAATATTTTTGTGGCTTTGGTTTTGGTTTGTGTGTGTGTCAAACAAGAACAATAACATTGTTCATCTTCTTCTCTACATCAATGTATCTCCCCAAATGTGTTTGTCATTCTTTTGCTCATTTATGTTTCTTTTTCTCTGCTAACTATGCAGAATTTTTGTTCCCGGTGGTTGGACTCTCAATACTAATACATTAAATTGTAAAAAATAATTTTATTCATTAACTTTACGCCACCATCGACTGAACCCATATATTTTGTTCGGAATTTCTTAGATGAAATGTTAAGAACCAGTTATGTTAGACTACGAATGACTCAGTTTGGGATCTCGTTGACTGGTCAACGAGTCGGAGTCTAG

mRNA sequence

AACATAAACTTTGAAACAAAAAAAGAAAAAGAGAAAGAATAAGCCAAAGCAAAAGCACAAAAGCAAAACCATAATGGAGAGAAAGAGCAACATTCCCCCATGAAAAATATTGAGTCAAACTCACATTTCCATCTAGAATCTTAGACTACTCGGTTCATTACCAATTAATTTTGAAATAGTTGCTACAACCTCGTTTGATAACGATTTTGTTTCTATTTGTTGACCGGTGGCCACTATAAGTAACACAGCTTCCCATTCCATCAACAAAGCACCCTCTGAGTAAAGCTTGAAAGAAAAAGAAAGAGGAAGAAATGGGTCGTGGTCGTTTTCTGTGGGAAGTAGCAGTGGCAGTGCTGCTGGTAAGCGCGATCCTTTGTTCGAACAAATGCGAAGCAGCAGCGATGGGGGTGGCTCGGGGAGGTAGCTACGGCGGAAACATGGCGTTGGAGTTGATGATGGTGGGCAGCCAAGTTGATATATTTCCTCTGCTACCTCGGTTTCGCGACTTTGAAGGAGACAAAGTCATAACAGACCAAACCAGCAACCAGAATGCCAGTTCTTGTAACAACGGGGCCGGAAACCAAAACGGCGCCTGCGGCGGCACTGCTAGTAACACACAAGACTGCAACAAATATGCCAACAATGGCCCCTGTCCTGCTTAGCCTTTAACCTACATTCCCACTGTTTCTGTGTATGTTGTTTGTTTAATCATTTCTCTGTTTCTCTGTTTTGTGTTTCTTATGATGTGGTCCTCTGTTTATTGTGGAGTTAATATTTTTGTGGCTTTGGTTTTGGTTTGTGTGTGTGTCAAACAAGAACAATAACATTGTTCATCTTCTTCTCTACATCAATGTATCTCCCCAAATGTGTTTGTCATTCTTTTGCTCATTTATGTTTCTTTTTCTCTGCTAACTATGCAGAATTTTTGTTCCCGGTGGTTGGACTCTCAATACTAATACATTAAATTGTAAAAAATAATTTTATTCATTAACTTTACGCCACCATCGACTGAACCCATATATTTTGTTCGGAATTTCTTAGATGAAATGTTAAGAACCAGTTATGTTAGACTACGAATGACTCAGTTTGGGATCTCGTTGACTGGTCAACGAGTCGGAGTCTAG

Coding sequence (CDS)

ATGGGTCGTGGTCGTTTTCTGTGGGAAGTAGCAGTGGCAGTGCTGCTGGTAAGCGCGATCCTTTGTTCGAACAAATGCGAAGCAGCAGCGATGGGGGTGGCTCGGGGAGGTAGCTACGGCGGAAACATGGCGTTGGAGTTGATGATGGTGGGCAGCCAAGTTGATATATTTCCTCTGCTACCTCGGTTTCGCGACTTTGAAGGAGACAAAGTCATAACAGACCAAACCAGCAACCAGAATGCCAGTTCTTGTAACAACGGGGCCGGAAACCAAAACGGCGCCTGCGGCGGCACTGCTAGTAACACACAAGACTGCAACAAATATGCCAACAATGGCCCCTGTCCTGCTTAG

Protein sequence

MGRGRFLWEVAVAVLLVSAILCSNKCEAAAMGVARGGSYGGNMALELMMVGSQVDIFPLLPRFRDFEGDKVITDQTSNQNASSCNNGAGNQNGACGGTASNTQDCNKYANNGPCPA
Homology
[Close]
BLAST of Sed0018708 vs. NCBI nr
Match: KAG6578548.1 (hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-07
Identity = 44/115 (38.26%), Postives = 61/115 (53.04%), Query Frame = 0 

Query: 1   MGRGRFLWEVAVAVLLVSAILC-SNKCEAAAMGVARGGSYGGNMALELMMVGSQVDIFPL 60
           MG     W VAVA L+V+ ILC SN   A+++G  R  +  G + +EL++          
Sbjct: 1   MGGRCSFWGVAVAALMVTIILCSSNSSRASSLG--RANATYGEVEVELLVRRE------- 60

Query: 61  LPRFRDFEGDKVITDQTSNQNASSCNNGAGNQNGACGGTASNTQDCNKYANNGPC 115
           + RF +F+  KV TD+T N    SC NG GN  G C G+ +N + CN YA    C
Sbjct: 61  IARFLNFKNMKVYTDKTQNPFVKSCGNGPGNPMGDCSGSPTNKKHCNSYAGASAC 106

[Close]
BLAST of Sed0018708 vs. NCBI nr
Match: KAA0039429.1 (hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK00618.1 hypothetical protein E5676_scaffold169G002380 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-05
Identity = 40/115 (34.78%), Postives = 55/115 (47.83%), Query Frame = 0 

Query: 2   GRGRF--LWEVAVAVLLVSAILCSNKCEAAAMGVARGGSYGGNMALELMMVGSQVDIFPL 61
           GR  F  L  V V V+ ++ +  S  C  + + +    +YGG    E++       I+  
Sbjct: 3   GRSSFCGLTMVVVVVMSITILSSSYSCRGSVL-MKANATYGGVSTTEMI-------IYHD 62

Query: 62  LPRFRDFEGDKVITDQTSNQNASSCNNGAGNQNGACGGTASNTQDCNKYANNGPC 115
           + RF    G K +T  T   N   CNNG GNQ G CGG A+N Q CN+Y    PC
Sbjct: 63  ITRFLMPPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109

[Close]
BLAST of Sed0018708 vs. ExPASy TrEMBL
Match: A0A5D3BNE4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002380 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 40/115 (34.78%), Postives = 55/115 (47.83%), Query Frame = 0 

Query: 2   GRGRF--LWEVAVAVLLVSAILCSNKCEAAAMGVARGGSYGGNMALELMMVGSQVDIFPL 61
           GR  F  L  V V V+ ++ +  S  C  + + +    +YGG    E++       I+  
Sbjct: 3   GRSSFCGLTMVVVVVMSITILSSSYSCRGSVL-MKANATYGGVSTTEMI-------IYHD 62

Query: 62  LPRFRDFEGDKVITDQTSNQNASSCNNGAGNQNGACGGTASNTQDCNKYANNGPC 115
           + RF    G K +T  T   N   CNNG GNQ G CGG A+N Q CN+Y    PC
Sbjct: 63  ITRFLMPPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109

The following BLAST results are available for this feature:
BLAST of Sed0018708 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578548.17.9e-0738.26hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0039429.14.3e-0534.78hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK0061... [more]
BLAST of Sed0018708 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0018708 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BNE42.1e-0534.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Sed0018708 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0018708.1Sed0018708.1mRNA