Sed0018526 (gene) Chayote v1

Overview
NameSed0018526
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTransmembrane protein, putative
LocationLG08: 35484772 .. 35485080 (+)
RNA-Seq ExpressionSed0018526
SyntenySed0018526
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCGCATCCACGCCGCCGTTGTTGCCGGACGTTCATCATTCTCCGGCGGGCGGCGGAGCCTGGAGGTCTTCCGGTTCGATCGGGCCGTTCTTGGCGGTGATCTCTGTTTTAACTCTGCTTTCGGTTCTGTCTTGCTTTTTGGGAAGAATTTGCAGTCGCGGATATGAAGATCAAACGCCATTACGGAGTGGAAATTATTTGAGTTTTTTGAAGAGGAAGTTGCAGAAGCCATGTGTTCAAGACGTTGAGTTCAGTGATTGCAAGCTTAACAAAAATGGCAACCTTCAAAACTCTTCCTCTTAG

mRNA sequence

ATGGCCACCGCATCCACGCCGCCGTTGTTGCCGGACGTTCATCATTCTCCGGCGGGCGGCGGAGCCTGGAGGTCTTCCGGTTCGATCGGGCCGTTCTTGGCGGTGATCTCTGTTTTAACTCTGCTTTCGGTTCTGTCTTGCTTTTTGGGAAGAATTTGCAGTCGCGGATATGAAGATCAAACGCCATTACGGAGTGGAAATTATTTGAGTTTTTTGAAGAGGAAGTTGCAGAAGCCATGTGTTCAAGACGTTGAGTTCAGTGATTGCAAGCTTAACAAAAATGGCAACCTTCAAAACTCTTCCTCTTAG

Coding sequence (CDS)

ATGGCCACCGCATCCACGCCGCCGTTGTTGCCGGACGTTCATCATTCTCCGGCGGGCGGCGGAGCCTGGAGGTCTTCCGGTTCGATCGGGCCGTTCTTGGCGGTGATCTCTGTTTTAACTCTGCTTTCGGTTCTGTCTTGCTTTTTGGGAAGAATTTGCAGTCGCGGATATGAAGATCAAACGCCATTACGGAGTGGAAATTATTTGAGTTTTTTGAAGAGGAAGTTGCAGAAGCCATGTGTTCAAGACGTTGAGTTCAGTGATTGCAAGCTTAACAAAAATGGCAACCTTCAAAACTCTTCCTCTTAG

Protein sequence

MATASTPPLLPDVHHSPAGGGAWRSSGSIGPFLAVISVLTLLSVLSCFLGRICSRGYEDQTPLRSGNYLSFLKRKLQKPCVQDVEFSDCKLNKNGNLQNSSS
Homology
BLAST of Sed0018526 vs. NCBI nr
Match: XP_022137289.1 (uncharacterized protein LOC111008787 [Momordica charantia])

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 69/117 (58.97%), Postives = 80/117 (68.38%), Query Frame = 0

Query: 1   MATASTPPLLPDVHHSPAGGGAWRSSGSIGPFLAVISVLTLLSVLSCFLGRICSRGYEDQ 60
           MATAS+ PLLPD   +PAGGG  +SSGSIGPF AVISVLTLLS+LSCFLGRICSRG E +
Sbjct: 1   MATASSSPLLPDQQQTPAGGGG-QSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSE-E 60

Query: 61  TPLRSGNYLSFLKRKLQKPCVQDVEFS---------------DCKLNKNGNLQNSSS 103
           TPL+S N L  LK +LQ+ CV+DVE                 D K  K+ +LQN SS
Sbjct: 61  TPLQSRNCLRSLKGQLQRRCVKDVEVGVKGIDLGDGAAATSMDRKFYKDCHLQNPSS 115

BLAST of Sed0018526 vs. NCBI nr
Match: OVA07645.1 (hypothetical protein BVC80_7393g5 [Macleaya cordata])

HSP 1 Score: 70.5 bits (171), Expect = 9.6e-09
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 7  PPLLPD--VHHSPAGGGAWRSSGSIGPFLAVISVLTLLSVLSCFLGRICS-RGYEDQTPL 66
          P + P   V  + A GGAWRSSGSIGPF AV++VLT+L+VLSC L RICS R       +
Sbjct: 15 PAIYPQAAVSLASASGGAWRSSGSIGPFFAVMAVLTVLTVLSCLLSRICSRRASAPPLDI 74

Query: 67 RSGNYLSFLKRKLQKPCVQDVEF 87
          R G+ + +L+RK  + C+   +F
Sbjct: 75 RYGDCIWWLQRKCSR-CISSHDF 96

BLAST of Sed0018526 vs. NCBI nr
Match: KAB1212726.1 (hypothetical protein CJ030_MR5G009768 [Morella rubra])

HSP 1 Score: 67.8 bits (164), Expect = 6.3e-08
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 0

Query: 22  AWRSSGSIGPFLAVISVLTLLSVLSCFLGRICSRGYEDQ-TPLR---SGNYLSFLKRKLQ 81
           AW+SSGSIGPF AVISVLT+L++LSC LGR+C+R   D  TPL          + KRK +
Sbjct: 30  AWQSSGSIGPFFAVISVLTVLAILSCVLGRLCARRARDSVTPLEIVSDAGCFGWAKRKCR 89

Query: 82  KPCVQDV-----------EFSDCKLNKNGNLQN 100
           +    DV           E +DCK+ K+G++Q+
Sbjct: 90  QCMAGDVDVGAKTMAFGRESNDCKV-KDGDVQH 121

BLAST of Sed0018526 vs. NCBI nr
Match: XP_030940931.1 (uncharacterized protein LOC115965771 [Quercus lobata])

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-07
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 0

Query: 4  ASTPPLLPDVHHSPAG-------------GGAWRSSGSIGPFLAVISVLTLLSVLSCFLG 63
          A+T P LP +   PAG               AW SSGSIGPF AV+SVLT+L++LSC LG
Sbjct: 2  ATTSPSLP-MQQQPAGETLTYNPVAVPNNNAAWSSSGSIGPFFAVMSVLTVLAILSCLLG 61

Query: 64 RICSRGYEDQTPLRS---GNYLSFLKRKLQKPCVQDVE 86
          R+C++  E  TPL S      L ++KRK ++    DV+
Sbjct: 62 RMCTK--EAVTPLESIKDSGCLGWVKRKCRQSMSCDVK 96

BLAST of Sed0018526 vs. NCBI nr
Match: XP_006390472.1 (uncharacterized protein LOC18008564 [Eutrema salsugineum] >ESQ27758.1 hypothetical protein EUTSA_v10019432mg [Eutrema salsugineum])

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 0

Query: 25  SSGSIGPFLAVISVLTLLSVLSCFLGRICSRGYE------DQTPL---RSGNYLSFLKRK 84
           SSGSIGPF AVISVL +L+VLSCFLGRIC+R  +      +  PL   +SG  L +L+RK
Sbjct: 48  SSGSIGPFFAVISVLVVLAVLSCFLGRICARRRQSTVLVAEANPLEMIKSGGLLGYLRRK 107

Query: 85  LQKPCVQDVE----FSDC 90
            ++    DVE     SDC
Sbjct: 108 WRRCLAGDVEAGAKVSDC 125

BLAST of Sed0018526 vs. ExPASy TrEMBL
Match: A0A6J1C6U1 (uncharacterized protein LOC111008787 OS=Momordica charantia OX=3673 GN=LOC111008787 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.2e-22
Identity = 69/117 (58.97%), Postives = 80/117 (68.38%), Query Frame = 0

Query: 1   MATASTPPLLPDVHHSPAGGGAWRSSGSIGPFLAVISVLTLLSVLSCFLGRICSRGYEDQ 60
           MATAS+ PLLPD   +PAGGG  +SSGSIGPF AVISVLTLLS+LSCFLGRICSRG E +
Sbjct: 1   MATASSSPLLPDQQQTPAGGGG-QSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSE-E 60

Query: 61  TPLRSGNYLSFLKRKLQKPCVQDVEFS---------------DCKLNKNGNLQNSSS 103
           TPL+S N L  LK +LQ+ CV+DVE                 D K  K+ +LQN SS
Sbjct: 61  TPLQSRNCLRSLKGQLQRRCVKDVEVGVKGIDLGDGAAATSMDRKFYKDCHLQNPSS 115

BLAST of Sed0018526 vs. ExPASy TrEMBL
Match: A0A200QB10 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_7393g5 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-09
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 7  PPLLPD--VHHSPAGGGAWRSSGSIGPFLAVISVLTLLSVLSCFLGRICS-RGYEDQTPL 66
          P + P   V  + A GGAWRSSGSIGPF AV++VLT+L+VLSC L RICS R       +
Sbjct: 15 PAIYPQAAVSLASASGGAWRSSGSIGPFFAVMAVLTVLTVLSCLLSRICSRRASAPPLDI 74

Query: 67 RSGNYLSFLKRKLQKPCVQDVEF 87
          R G+ + +L+RK  + C+   +F
Sbjct: 75 RYGDCIWWLQRKCSR-CISSHDF 96

BLAST of Sed0018526 vs. ExPASy TrEMBL
Match: A0A2N9HK44 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39992 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 51/118 (43.22%), Postives = 67/118 (56.78%), Query Frame = 0

Query: 4   ASTPPLLPDVHHSPAGG-----------GAWRSSGSIGPFLAVISVLTLLSVLSCFLGRI 63
           A+T   LP     PAGG             W+SSGSIGPF AV+SVL LLS+LSC LG+I
Sbjct: 2   ATTSSSLPTAQQQPAGGTLTNPEAVQNTSVWQSSGSIGPFFAVMSVLILLSILSCMLGKI 61

Query: 64  CSRGYEDQTPLRS---GNYLSFLKRKLQKPCVQ--DVE-----FSDCKLNKN-GNLQN 100
           C+R  E  +PL S      L ++KRK ++ C+   DVE      + CK  KN GN+++
Sbjct: 62  CTR--ETVSPLESIKGRGCLGWVKRKFRR-CMPGGDVEVGIKMMAICKGRKNDGNVKD 116

BLAST of Sed0018526 vs. ExPASy TrEMBL
Match: A0A6A1VLI4 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G009768 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.0e-08
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 0

Query: 22  AWRSSGSIGPFLAVISVLTLLSVLSCFLGRICSRGYEDQ-TPLR---SGNYLSFLKRKLQ 81
           AW+SSGSIGPF AVISVLT+L++LSC LGR+C+R   D  TPL          + KRK +
Sbjct: 30  AWQSSGSIGPFFAVISVLTVLAILSCVLGRLCARRARDSVTPLEIVSDAGCFGWAKRKCR 89

Query: 82  KPCVQDV-----------EFSDCKLNKNGNLQN 100
           +    DV           E +DCK+ K+G++Q+
Sbjct: 90  QCMAGDVDVGAKTMAFGRESNDCKV-KDGDVQH 121

BLAST of Sed0018526 vs. ExPASy TrEMBL
Match: A0A7N2MQY5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.8e-08
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 0

Query: 4  ASTPPLLPDVHHSPAG-------------GGAWRSSGSIGPFLAVISVLTLLSVLSCFLG 63
          A+T P LP +   PAG               AW SSGSIGPF AV+SVLT+L++LSC LG
Sbjct: 2  ATTSPSLP-MQQQPAGETLTYNPVAVPNNNAAWSSSGSIGPFFAVMSVLTVLAILSCLLG 61

Query: 64 RICSRGYEDQTPLRS---GNYLSFLKRKLQKPCVQDVE 86
          R+C++  E  TPL S      L ++KRK ++    DV+
Sbjct: 62 RMCTK--EAVTPLESIKDSGCLGWVKRKCRQSMSCDVK 96

BLAST of Sed0018526 vs. TAIR 10
Match: AT1G74055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 9.3e-10
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 25  SSGSIGPFLAVISVLTLLSVLSCFLGRICSRGYE------DQTPL---RSGNYLSFLKRK 84
           SS SIGPF AVISVL +L+VLSCFLGR C+R  +      +  PL   +SG  L +L+RK
Sbjct: 48  SSSSIGPFFAVISVLIILAVLSCFLGRFCARSRQRTGLVAEVNPLEMIKSGGLLGWLRRK 107

Query: 85  LQKPCVQDVE 86
            ++    DVE
Sbjct: 108 WRRCLAGDVE 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022137289.11.7e-2158.97uncharacterized protein LOC111008787 [Momordica charantia][more]
OVA07645.19.6e-0948.19hypothetical protein BVC80_7393g5 [Macleaya cordata][more]
KAB1212726.16.3e-0845.16hypothetical protein CJ030_MR5G009768 [Morella rubra][more]
XP_030940931.11.8e-0743.88uncharacterized protein LOC115965771 [Quercus lobata][more]
XP_006390472.12.4e-0751.28uncharacterized protein LOC18008564 [Eutrema salsugineum] >ESQ27758.1 hypothetic... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C6U18.2e-2258.97uncharacterized protein LOC111008787 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A200QB104.7e-0948.19Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_7393g5 PE=4 SV=1[more]
A0A2N9HK441.8e-0843.22Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39992 PE=4 SV=1[more]
A0A6A1VLI43.0e-0845.16Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G009768 PE=4 SV=1[more]
A0A7N2MQY58.8e-0843.88Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G74055.19.3e-1050.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR33429:SF23OS02G0709350 PROTEINcoord: 18..92
NoneNo IPR availablePANTHERPTHR33429OS02G0708000 PROTEIN-RELATEDcoord: 18..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0018526.1Sed0018526.1mRNA