Sed0018520 (gene) Chayote v1

Overview
NameSed0018520
Typegene
OrganismSechium edule (Chayote v1)
DescriptionGag/pol protein
LocationLG04: 8357233 .. 8357454 (+)
RNA-Seq ExpressionSed0018520
SyntenySed0018520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATACGATTCTTGTTATCGATGACAAAAAGTTTGTTCTCATGGAGGAATGCCCTCCTGCACCGGCACCTAATGCAACACGAAATATTCGTGAAACACATGATCGTTGGCATAATGCTAATGGAAAGACAATGGTCTATATCTTGGAAAGTGTCTCGAAAATTCTAGTTAAGAAACTAGAGAACATGGTAACTGCTTTAGAGATTATGAAAGCCTCATGA

mRNA sequence

ATGAATACGATTCTTGTTATCGATGACAAAAAGTTTGTTCTCATGGAGGAATGCCCTCCTGCACCGGCACCTAATGCAACACGAAATATTCGTGAAACACATGATCGTTGGCATAATGCTAATGGAAAGACAATGGTCTATATCTTGGAAAGTGTCTCGAAAATTCTAGTTAAGAAACTAGAGAACATGGTAACTGCTTTAGAGATTATGAAAGCCTCATGA

Coding sequence (CDS)

ATGAATACGATTCTTGTTATCGATGACAAAAAGTTTGTTCTCATGGAGGAATGCCCTCCTGCACCGGCACCTAATGCAACACGAAATATTCGTGAAACACATGATCGTTGGCATAATGCTAATGGAAAGACAATGGTCTATATCTTGGAAAGTGTCTCGAAAATTCTAGTTAAGAAACTAGAGAACATGGTAACTGCTTTAGAGATTATGAAAGCCTCATGA

Protein sequence

MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIMKAS
Homology
[Close]
BLAST of Sed0018520 vs. NCBI nr
Match: XP_022158568.1 (uncharacterized protein LOC111025021 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-15
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 1   MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKL 60
           +NTILVIDD +FVL EECPPAPAPNA R +R+ +DRW  AN K  VYIL S+S++L KK 
Sbjct: 32  LNTILVIDDLRFVLTEECPPAPAPNANRTVRDAYDRWVKANEKARVYILASISEVLSKKH 91

Query: 61  ENMVTALEIM 71
           E + T  EIM
Sbjct: 92  ERLATTREIM 101

[Close]
BLAST of Sed0018520 vs. NCBI nr
Match: XP_022159023.1 (uncharacterized protein LOC111025468 [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 4.9e-15
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 0 

Query: 1  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKL 60
          +NTILVIDD + VL EECPPAPAPNA R +RE +DRW  AN K  VYIL S+S +L KK 
Sbjct: 26 LNTILVIDDLRSVLTEECPPAPAPNANRTVREAYDRWVKANDKARVYILASISDVLSKKH 85

Query: 61 ENMVTALEIM 71
          E + TA E+M
Sbjct: 86 ERLATAREMM 95

[Close]
BLAST of Sed0018520 vs. NCBI nr
Match: XP_022158791.1 (uncharacterized protein LOC111025258 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 8.4e-15
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 0 

Query: 1  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKL 60
          +NTILVIDD +FVL EECPPA APN+ + +R+ HDRW  AN K  VYIL S+S +L KK 
Sbjct: 26 LNTILVIDDLRFVLTEECPPALAPNSNQTVRDAHDRWFKANEKARVYILASISDVLSKKH 85

Query: 61 ENMVTALEIM 71
          E + TA EIM
Sbjct: 86 EGLATAREIM 95

[Close]
BLAST of Sed0018520 vs. NCBI nr
Match: XP_038885848.1 (uncharacterized protein LOC120076150 [Benincasa hispida])

HSP 1 Score: 90.1 bits (222), Expect = 8.4e-15
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 1  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKL 60
          +NTIL+I+D KFVL+EECPP P P A+R +RE +DRW  AN KT VYIL S+SK+L KK 
Sbjct: 26 INTILMINDLKFVLLEECPPTPGPTASRIVREVYDRWTKANEKTKVYILPSLSKVLAKKH 85

Query: 61 ENMVTALEIM 71
          E MV+A ++M
Sbjct: 86 EVMVSAWKVM 95

[Close]
BLAST of Sed0018520 vs. NCBI nr
Match: XP_038880476.1 (uncharacterized protein LOC120072136 [Benincasa hispida])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 46/70 (65.71%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 1  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKL 60
          +NTILVIDD KFVL EECPP PA N  R I + HDRW  AN K  VYIL S+S IL KK 
Sbjct: 26 LNTILVIDDLKFVLTEECPPVPAQNVNRTIWDAHDRWTKANEKAKVYILASISDILSKKH 85

Query: 61 ENMVTALEIM 71
          E MV A EIM
Sbjct: 86 EKMVMAKEIM 95

[Close]
BLAST of Sed0018520 vs. ExPASy TrEMBL
Match: A0A6J1DWG6 (uncharacterized protein LOC111025021 OS=Momordica charantia OX=3673 GN=LOC111025021 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.3e-16
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 1   MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKL 60
           +NTILVIDD +FVL EECPPAPAPNA R +R+ +DRW  AN K  VYIL S+S++L KK 
Sbjct: 32  LNTILVIDDLRFVLTEECPPAPAPNANRTVRDAYDRWVKANEKARVYILASISEVLSKKH 91

Query: 61  ENMVTALEIM 71
           E + T  EIM
Sbjct: 92  ERLATTREIM 101

[Close]
BLAST of Sed0018520 vs. ExPASy TrEMBL
Match: A0A6J1DXP1 (uncharacterized protein LOC111025468 OS=Momordica charantia OX=3673 GN=LOC111025468 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-15
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 0 

Query: 1  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKL 60
          +NTILVIDD + VL EECPPAPAPNA R +RE +DRW  AN K  VYIL S+S +L KK 
Sbjct: 26 LNTILVIDDLRSVLTEECPPAPAPNANRTVREAYDRWVKANDKARVYILASISDVLSKKH 85

Query: 61 ENMVTALEIM 71
          E + TA E+M
Sbjct: 86 ERLATAREMM 95

[Close]
BLAST of Sed0018520 vs. ExPASy TrEMBL
Match: A0A6J1E205 (uncharacterized protein LOC111025258 OS=Momordica charantia OX=3673 GN=LOC111025258 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.1e-15
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 0 

Query: 1  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKL 60
          +NTILVIDD +FVL EECPPA APN+ + +R+ HDRW  AN K  VYIL S+S +L KK 
Sbjct: 26 LNTILVIDDLRFVLTEECPPALAPNSNQTVRDAHDRWFKANEKARVYILASISDVLSKKH 85

Query: 61 ENMVTALEIM 71
          E + TA EIM
Sbjct: 86 EGLATAREIM 95

[Close]
BLAST of Sed0018520 vs. ExPASy TrEMBL
Match: A0A6J1DWI4 (uncharacterized protein LOC111024145 OS=Momordica charantia OX=3673 GN=LOC111024145 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 0 

Query: 1   MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKL 60
           +NTILV+DD +F+L EECP AP PNA R  R+ +DRW  AN K  VYIL S+S +L KK 
Sbjct: 65  LNTILVVDDLRFILTEECPQAPTPNAARASRDAYDRWIKANDKANVYILTSISDVLSKKH 124

Query: 61  ENMVTALEIM 71
           E+MVTA EIM
Sbjct: 125 ESMVTAREIM 134

[Close]
BLAST of Sed0018520 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 0 

Query: 1  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKL 60
          +NT+L+IDD +FVL+EECP  PA NATR +RE ++RW  AN K   YIL S+S++L KK 
Sbjct: 26 INTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKH 85

Query: 61 ENMVTALEIM 71
          E+M+TA EIM
Sbjct: 86 ESMLTAREIM 95

The following BLAST results are available for this feature:
BLAST of Sed0018520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158568.11.3e-1562.86uncharacterized protein LOC111025021 [Momordica charantia][more]
XP_022159023.14.9e-1562.86uncharacterized protein LOC111025468 [Momordica charantia][more]
XP_022158791.18.4e-1561.43uncharacterized protein LOC111025258 [Momordica charantia][more]
XP_038885848.18.4e-1561.43uncharacterized protein LOC120076150 [Benincasa hispida][more]
XP_038880476.11.4e-1465.71uncharacterized protein LOC120072136 [Benincasa hispida][more]
BLAST of Sed0018520 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0018520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DWG66.3e-1662.86uncharacterized protein LOC111025021 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DXP12.4e-1562.86uncharacterized protein LOC111025468 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1E2054.1e-1561.43uncharacterized protein LOC111025258 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DWI41.2e-1461.43uncharacterized protein LOC111024145 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A5A7SMH81.5e-1458.57Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... [more]
BLAST of Sed0018520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0018520.1Sed0018520.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0005488 binding