Sed0018517 (gene) Chayote v1

Overview


Name	Sed0018517
Type	gene
Organism	Sechium edule (Chayote v1)
Description	nifU-like protein 3, chloroplastic
Location	LG11: 5946668 .. 5949586 (-)
RNA-Seq Expression	Sed0018517
Synteny	Sed0018517

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATCCAACATGTGGCTCTTACATTTCAACATTCCATCCACAAAATCTCACTAAAACTCTTCTTCTTCTACTAAACTCATCTTCATCACCAAAAACCCAATCCCAAAATCTTGCCCTTCTTCAGAATCGCAACCCCAAAATCTCCATTGAAGCACACACTTCAAAAATGGCGTAAAGAGCTCTTTACATGACACCTTACCGCTCGCATTTCAATGGCGGCCGCTCTCTCAGCTCGAGCTCACGGCCTCACCCCAACTCCGCCTTCTTCATCCTCTCGCCGAATTTCGGCTGCCCATTTGCCGCTCTTCAAGGTTTGTTTCTAATCTTCGCCGATTTCGTTCTTCGTTTGTGCGATTTTTGATTATGCGATTCTTCGGAACAGAGTCCGTTCTTCAGCGGCCAGTTTTGCAGTGGCCGATTTCTGCGATTGAATTCACATTGCACTCTGAGGCGACGTATAGGAGGTACCATTTTGGATTTCGCTTTTTAGATGAACCCTAACGAAATTGCAGATTTGGCTATTATTTGTTGTTGATGTTTTTTCTTGTAAATTTGTAGTAAATTCTTAGAACTAGTGTGCAATTTGGTTTGTGCCAATTTGGTGGAGCTGTTCAGGAGTTCATTAAGGAAATGTTAATTCAATATCAAAATTGCTGCTATTCATTCTAATACTAAGGCTCTATTTAAACTATCAATCCTAGGGGTCAAAAGTGTCATAAGTAACCGAGAGGTGATGAGTTCGTTCCAGGGTGGCTGTCTGCCTCGGAAATAATTTCCTACGGATTCCCTTGACATTCAAATATTGGATTGTTAGACGGTATGCCATGAAAATAGTTGAAGCGCATGTAAGTTGGCGCCGGATAATGTATATAGTATGTAAGAAACTAAAACATTTTCGCCTAAAAAACAGTTTAACACGTTAATTGTAAATCATCATGAGGTGCGTAAAGGCATTTAGAATTGTGGAATTGTTAGATAAAATGAGTTCAATCCAGGGTGGTCACCTAATTAGAATTTAATTTCTTACCAGTTTTCTTGACAAAAAAATGTAAAAGGATCAGATGGATATAAAAGAAACACACTAATTAACAATTCTCTAACTCACTACATCATATTCTCTACATTGAGATGAATTTTTACTCCAATTTGGTTGGATCTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCTGTTGCTTAGGGAGTGTGGTATCACCCAGTTGTGTTCTGCCATTGACTGAGGAAAATGTAGAGAAGGTGCTGGATGAGGTAAGGCCAAGCCTGATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGGCTTGTTGTGATATTGAAGCTTCAAGGGGCTTGTGGCTCTTGCCCAAGCTCAACAATGACACTCAAAATGGGGATTGAAACCAGACTCAGAGACAAAATTCCTGAAATTTTGGAAGTTGAGCAGATCATGGACACTGAAACTGGACTTGAACTCAATGAGGAAAATGTTGAAAAGGTTAGACTCTCAATTCAAACATCTTCATAGATAAGCATAGAACTATTTTTTTTTTTCAATAACTTGACTGACTGAAGAAACATACCCTTGGTTAATATAATTAATTTACTACCACAACCCGTCCCCAAGGGGTCGGTCGTGCAGTGGTTGATGGCTTAGGCTTTGAAAGTATGCTCCTCTCAAGGTTCCGAGTTCGAGTCTTCCCTATGACAATACTCCTTTGATGCCTCTGGTGCCTAGCCAGCTTAGACTTTTAGATTGATTGATGGTTTAACATAACACTTTCAATCTTATCAATGAAAATGTTCTTGTTTCTTATAAAAAAGAAAGATAATATGAGGTTTCTGTAAAGGTATCGATACCTTTTCGGGTTCCAGAATACTTACCGAATATTACCAAACATAAATGACTAGGAAATAACAGTATGAAACCTCAATATATCATATATAACGTTCATAATCCAGCAATTACTCCATTACAAACTCCAATAGCCATAACTAGATACAATATAGAAGATCAAAGGATAACAACAATAAAATACGATAGCTAACCGGTGATGTTCGAGAGCCACCGGAACCACTCCTCCAAGTCCTCTAAACCCTTCCTGGTCTTATTTATACCCTAAAGGATCAAACCACAATCTCACAAAAACCCTATTATGGAATTACCCAATTTGCCCTTTCTAGCATGTTGAATGGAATGGGAGTCCTGACACTTTCATTTCAAAACTAATTGGTAGGAAGATTTTAAAATCCTCAACACAATATACTAATGAAGTATAAATAAAAGACGAATCTACCTTCATTAGAGATAAACCTTAAACGAGTATAAAACAACCATAATTCAAAAAACATGATCACCAAAATCCATCTTAAGAGTCTAATACCAATCCATAGAAGCTGTCAAGGTGCACATAAGTTAGTACGTAGTAATTGTAAATAAAAAAAGAAAAAAGAAAAAAGATTAGCCCTTCCTAATTTTTTCATTTATGTTTCTAGTATGGTTGCTATACTAGAGGAAGAAAATGAATCATGAGAAATTGTTTGTTTGTCAGCTACTTGCAGAGATAAGGCCATACTTGGCAGGCACAGGAGGCGGAATACTGGAACTTATAGAGATAAAAGATTATGTTGTTAAGGTGCGGCTGAGCGGACCGGCAGCTGGTGTTATGACGGTTCGAGTTGCTTTGACACAGAAGTTGAGGGAGAAAATCCCAGTCATTGCAGCTGTTCAACTTATAGAGTAGCAGCAGCTTTCAAATGAAAGGTCAAGTTTTTCTTGCTCATATACTCATAGATGGTGACTTAAAGTTGTAACTTTTTTTTTTCCTTCTCTTTCTCTTACTTTTAATTTACAATTGTAATCTGGTTTGTGAATGCTGAGAGTAGAGAATAATTTATTTATAGGGTTCTGTTTGGTTGGC

mRNA sequence

CTATCCAACATGTGGCTCTTACATTTCAACATTCCATCCACAAAATCTCACTAAAACTCTTCTTCTTCTACTAAACTCATCTTCATCACCAAAAACCCAATCCCAAAATCTTGCCCTTCTTCAGAATCGCAACCCCAAAATCTCCATTGAAGCACACACTTCAAAAATGGCGTAAAGAGCTCTTTACATGACACCTTACCGCTCGCATTTCAATGGCGGCCGCTCTCTCAGCTCGAGCTCACGGCCTCACCCCAACTCCGCCTTCTTCATCCTCTCGCCGAATTTCGGCTGCCCATTTGCCGCTCTTCAAGAGTCCGTTCTTCAGCGGCCAGTTTTGCAGTGGCCGATTTCTGCGATTGAATTCACATTGCACTCTGAGGCGACGTATAGGAGGGAGTGTGGTATCACCCAGTTGTGTTCTGCCATTGACTGAGGAAAATGTAGAGAAGGTGCTGGATGAGGTAAGGCCAAGCCTGATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGGCTTGTTGTGATATTGAAGCTTCAAGGGGCTTGTGGCTCTTGCCCAAGCTCAACAATGACACTCAAAATGGGGATTGAAACCAGACTCAGAGACAAAATTCCTGAAATTTTGGAAGTTGAGCAGATCATGGACACTGAAACTGGACTTGAACTCAATGAGGAAAATGTTGAAAAGCTACTTGCAGAGATAAGGCCATACTTGGCAGGCACAGGAGGCGGAATACTGGAACTTATAGAGATAAAAGATTATGTTGTTAAGGTGCGGCTGAGCGGACCGGCAGCTGGTGTTATGACGGTTCGAGTTGCTTTGACACAGAAGTTGAGGGAGAAAATCCCAGTCATTGCAGCTGTTCAACTTATAGAGTAGCAGCAGCTTTCAAATGAAAGGTCAAGTTTTTCTTGCTCATATACTCATAGATGGTGACTTAAAGTTGTAACTTTTTTTTTTCCTTCTCTTTCTCTTACTTTTAATTTACAATTGTAATCTGGTTTGTGAATGCTGAGAGTAGAGAATAATTTATTTATAGGGTTCTGTTTGGTTGGC

Coding sequence (CDS)

ATGGCGGCCGCTCTCTCAGCTCGAGCTCACGGCCTCACCCCAACTCCGCCTTCTTCATCCTCTCGCCGAATTTCGGCTGCCCATTTGCCGCTCTTCAAGAGTCCGTTCTTCAGCGGCCAGTTTTGCAGTGGCCGATTTCTGCGATTGAATTCACATTGCACTCTGAGGCGACGTATAGGAGGGAGTGTGGTATCACCCAGTTGTGTTCTGCCATTGACTGAGGAAAATGTAGAGAAGGTGCTGGATGAGGTAAGGCCAAGCCTGATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGGCTTGTTGTGATATTGAAGCTTCAAGGGGCTTGTGGCTCTTGCCCAAGCTCAACAATGACACTCAAAATGGGGATTGAAACCAGACTCAGAGACAAAATTCCTGAAATTTTGGAAGTTGAGCAGATCATGGACACTGAAACTGGACTTGAACTCAATGAGGAAAATGTTGAAAAGCTACTTGCAGAGATAAGGCCATACTTGGCAGGCACAGGAGGCGGAATACTGGAACTTATAGAGATAAAAGATTATGTTGTTAAGGTGCGGCTGAGCGGACCGGCAGCTGGTGTTATGACGGTTCGAGTTGCTTTGACACAGAAGTTGAGGGAGAAAATCCCAGTCATTGCAGCTGTTCAACTTATAGAGTAG

Protein sequence

MAAALSARAHGLTPTPPSSSSRRISAAHLPLFKSPFFSGQFCSGRFLRLNSHCTLRRRIGGSVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPVIAAVQLIE

Homology

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BLAST of Sed0018517 vs. NCBI nr
Match: XP_022929559.1 (nifU-like protein 3, chloroplastic [Cucurbita moschata] >KAG6598879.1 NifU-like protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 357.8 bits (917), Expect = 6.6e-95
Identity = 194/228 (85.09%), Postives = 200/228 (87.72%), Query Frame = 0


Query: 1   MAAALSARAHGLTPTPPS-----SSSRRISAAHLPLFKSPFFSGQFCSGRFLRLNSHCTL 60
           M AA S RA  L PTP +     S S R SA+HL  FKS FF GQFCS RFL  NS CT 
Sbjct: 1   MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSSFFRGQFCSRRFLGFNSSCTR 60

Query: 61  RRRIGGSVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120
           RR + G+VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS
Sbjct: 61  RRHL-GNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120

Query: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGG 180
           CPSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVEKLLAEIRPYLAGTGGG
Sbjct: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGG 180

Query: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPVIAAVQLIE 224
           ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIP IAAVQLIE
Sbjct: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Sed0018517 vs. NCBI nr
Match: XP_022997561.1 (nifU-like protein 3, chloroplastic [Cucurbita maxima] >XP_023545672.1 nifU-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357.8 bits (917), Expect = 6.6e-95
Identity = 194/228 (85.09%), Postives = 200/228 (87.72%), Query Frame = 0


Query: 1   MAAALSARAHGLTPTPPS-----SSSRRISAAHLPLFKSPFFSGQFCSGRFLRLNSHCTL 60
           M AA S RA  L PTP +     S S R SA+HL  FKS FF GQFCS RFL  NS CT 
Sbjct: 1   MVAAFSTRAQALKPTPTTAPLYRSPSERTSASHLSFFKSSFFRGQFCSRRFLGFNSSCTR 60

Query: 61  RRRIGGSVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120
           RR + G+VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS
Sbjct: 61  RRHL-GNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120

Query: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGG 180
           CPSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVEKLLAEIRPYLAGTGGG
Sbjct: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGG 180

Query: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPVIAAVQLIE 224
           ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIP IAAVQLIE
Sbjct: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Sed0018517 vs. NCBI nr
Match: XP_038889481.1 (nifU-like protein 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 357.1 bits (915), Expect = 1.1e-94
Identity = 194/228 (85.09%), Postives = 201/228 (88.16%), Query Frame = 0


Query: 1   MAAALSARAHGLTPTPPS-----SSSRRISAAHLPLFKSPFFSGQFCSGRFLRLNSHCTL 60
           M AA S RAH L  TP +     S S   S +HL LFK+ FF GQFCS RFLR NS CT 
Sbjct: 1   MVAAFSTRAHPLKSTPIAATLYCSPSEPTSPSHLSLFKTSFFRGQFCSRRFLRFNSSCTQ 60

Query: 61  RRRIGGSVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120
           RR + G+VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS
Sbjct: 61  RRHL-GNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120

Query: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGG 180
           CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEK+LAEIRPYLAGTGGG
Sbjct: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLAEIRPYLAGTGGG 180

Query: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPVIAAVQLIE 224
           ILE+IEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIP IAAVQLIE
Sbjct: 181 ILEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Sed0018517 vs. NCBI nr
Match: KAG7029821.1 (NifU-like protein 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 355.9 bits (912), Expect = 2.5e-94
Identity = 193/228 (84.65%), Postives = 199/228 (87.28%), Query Frame = 0


Query: 1   MAAALSARAHGLTPTPPS-----SSSRRISAAHLPLFKSPFFSGQFCSGRFLRLNSHCTL 60
           M AA S RA  L PTP +     S S R SA+HL  FKS FF GQFC  RFL  NS CT 
Sbjct: 1   MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSSFFRGQFCRRRFLGFNSSCTR 60

Query: 61  RRRIGGSVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120
           RR + G+VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS
Sbjct: 61  RRHL-GNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120

Query: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGG 180
           CPSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVEKLLAEIRPYLAGTGGG
Sbjct: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGG 180

Query: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPVIAAVQLIE 224
           ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIP IAAVQLIE
Sbjct: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Sed0018517 vs. NCBI nr
Match: TYK01397.1 (nifU-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 349.7 bits (896), Expect = 1.8e-92
Identity = 191/228 (83.77%), Postives = 198/228 (86.84%), Query Frame = 0


Query: 1   MAAALSARAHGLTPTPPS-----SSSRRISAAHLPLFKSPFFSGQFCSGRFLRLNSHCTL 60
           M A  S RA     TP +     SSS   S +HL LFKS FF GQFCS RFLR N  CT 
Sbjct: 1   MVATFSTRAQPFKSTPIAATLYPSSSHPTSPSHLSLFKSSFFRGQFCSRRFLRFNPSCTR 60

Query: 61  RRRIGGSVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120
            RR+ G+VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS
Sbjct: 61  IRRL-GNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120

Query: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGG 180
           CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEK+L+EIRPYLAGTGGG
Sbjct: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLSEIRPYLAGTGGG 180

Query: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPVIAAVQLIE 224
           ILE+IEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIP IAAVQLIE
Sbjct: 181 ILEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Sed0018517 vs. ExPASy Swiss-Prot
Match: Q84RQ7 (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.3e-69
Identity = 143/192 (74.48%), Postives = 163/192 (84.90%), Query Frame = 0


Query: 34  SPFFSGQFCSGRFLRLNSHCTLRRR-IGGSVVSPSCVLPLTEENVEKVLDEVRPSLMADG 93
           S F  GQF    F  L     LR+R + G V   SCV+PLTEENVE+VLDEVRPSLMADG
Sbjct: 48  STFLRGQFQRIHFSWLQHTRPLRKRTVFGHV---SCVMPLTEENVERVLDEVRPSLMADG 107

Query: 94  GNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTET-GL 153
           GNVALHEIDGLVV+LKLQGACGSCPSS+MTLKMGIE+RLRDKIPEI+ VEQ +++ET GL
Sbjct: 108 GNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIPEIMSVEQFLESETGGL 167

Query: 154 ELNEENVEKLLAEIRPYLAGTGGGILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLRE 213
           ELN+EN+EK+L+E+RPYL+GTGGG LEL+EI  YVVKVRL+GPAAGVMTVRVALTQKLRE
Sbjct: 168 ELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAGVMTVRVALTQKLRE 227

Query: 214 KIPVIAAVQLIE 224
            IP I AVQL+E
Sbjct: 228 TIPSIGAVQLLE 236

[Close]

BLAST of Sed0018517 vs. ExPASy Swiss-Prot
Match: Q93W20 (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.0e-61
Identity = 121/169 (71.60%), Postives = 144/169 (85.21%), Query Frame = 0


Query: 56  RRRIGGSVVSPSCVL--PLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGAC 115
           R ++  +V +P  +L  PLTEENVE VLDE+RP LM+DGGNVALHEIDG +V +KLQGAC
Sbjct: 67  RSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGAC 126

Query: 116 GSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTG 175
           GSCPSSTMT+KMGIE RL +KIPEI+ VE + D ETGLELNEEN+EK+L EIRPYL GT 
Sbjct: 127 GSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTA 186

Query: 176 GGILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPVIAAVQLI 223
            G L+L+EI+D +VK+R++GPAAGVMTVRVA+TQKLREKIP IAAVQLI
Sbjct: 187 DGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 235

[Close]

BLAST of Sed0018517 vs. ExPASy Swiss-Prot
Match: Q84LK7 (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.7e-51
Identity = 107/153 (69.93%), Postives = 125/153 (81.70%), Query Frame = 0


Query: 70  LPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIET 129
           LPLT  NVE VLD+VRP L ADGG+VALHEI G VV LKLQGACGSCPSS +T+K GIE 
Sbjct: 73  LPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIER 132

Query: 130 RLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGILELIEIKDYVVKV 189
           RL +KIP++  VE + D ETGLELNEENVEK+L EIRPYLAGTGGG L+ + IK  +VKV
Sbjct: 133 RLMEKIPDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKV 192

Query: 190 RLSGPAAGVMTVRVALTQKLREKIPVIAAVQLI 223
           RL+GPAA V TVR+A+++KLREKIP I  VQL+
Sbjct: 193 RLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLL 225

[Close]

BLAST of Sed0018517 vs. ExPASy Swiss-Prot
Match: Q93W77 (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.2e-18
Identity = 54/141 (38.30%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 72  LTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRL 131
           LT +NV+ VL++VRP L++DGGNV +  ++  VV LKLQGAC SCPSS+ T+ MGIE  L
Sbjct: 85  LTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVL 144

Query: 132 RDKIPEIL-EVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGILELIEIKDYVVKVR 191
           ++K  + L ++ Q+ D E   ++  E V   L  +RP +   GG + E++ ++     V+
Sbjct: 145 KEKFGDALKDIRQVFDEEV-KQITVEAVNAHLDILRPAIKNYGGSV-EVLSVEGEDCVVK 204

Query: 192 LSGPAAGVMTVRVALTQKLRE 212
             GP +  M ++ A+ +K ++
Sbjct: 205 YVGPESIGMGIQAAIKEKFKD 223

[Close]

BLAST of Sed0018517 vs. ExPASy Swiss-Prot
Match: P33179 (Nitrogen fixation protein NifU (Fragment) OS=Anabaena sp. (strain L31) OX=29412 GN=nifU PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-15
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 77  VEKVLD-EVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKI 136
           ++KVLD EVRP L+ADGG+V L+++DG +V + LQGACGSCPSST TLK+ IE+RLRD+I
Sbjct: 44  IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRI 103

Query: 137 PEILEVEQI 145
              L VE +
Sbjct: 104 NPSLVVEAV 112

[Close]

BLAST of Sed0018517 vs. ExPASy TrEMBL
Match: A0A6J1K7T6 (nifU-like protein 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111492451 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.2e-95
Identity = 194/228 (85.09%), Postives = 200/228 (87.72%), Query Frame = 0


Query: 1   MAAALSARAHGLTPTPPS-----SSSRRISAAHLPLFKSPFFSGQFCSGRFLRLNSHCTL 60
           M AA S RA  L PTP +     S S R SA+HL  FKS FF GQFCS RFL  NS CT 
Sbjct: 1   MVAAFSTRAQALKPTPTTAPLYRSPSERTSASHLSFFKSSFFRGQFCSRRFLGFNSSCTR 60

Query: 61  RRRIGGSVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120
           RR + G+VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS
Sbjct: 61  RRHL-GNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120

Query: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGG 180
           CPSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVEKLLAEIRPYLAGTGGG
Sbjct: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGG 180

Query: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPVIAAVQLIE 224
           ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIP IAAVQLIE
Sbjct: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Sed0018517 vs. ExPASy TrEMBL
Match: A0A6J1EP39 (nifU-like protein 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436107 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.2e-95
Identity = 194/228 (85.09%), Postives = 200/228 (87.72%), Query Frame = 0


Query: 1   MAAALSARAHGLTPTPPS-----SSSRRISAAHLPLFKSPFFSGQFCSGRFLRLNSHCTL 60
           M AA S RA  L PTP +     S S R SA+HL  FKS FF GQFCS RFL  NS CT 
Sbjct: 1   MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSSFFRGQFCSRRFLGFNSSCTR 60

Query: 61  RRRIGGSVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120
           RR + G+VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS
Sbjct: 61  RRHL-GNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120

Query: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGG 180
           CPSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVEKLLAEIRPYLAGTGGG
Sbjct: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGG 180

Query: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPVIAAVQLIE 224
           ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIP IAAVQLIE
Sbjct: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Sed0018517 vs. ExPASy TrEMBL
Match: A0A5D3BPX3 (NifU-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00910 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 8.7e-93
Identity = 191/228 (83.77%), Postives = 198/228 (86.84%), Query Frame = 0


Query: 1   MAAALSARAHGLTPTPPS-----SSSRRISAAHLPLFKSPFFSGQFCSGRFLRLNSHCTL 60
           M A  S RA     TP +     SSS   S +HL LFKS FF GQFCS RFLR N  CT 
Sbjct: 1   MVATFSTRAQPFKSTPIAATLYPSSSHPTSPSHLSLFKSSFFRGQFCSRRFLRFNPSCTR 60

Query: 61  RRRIGGSVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120
            RR+ G+VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS
Sbjct: 61  IRRL-GNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120

Query: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGG 180
           CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEK+L+EIRPYLAGTGGG
Sbjct: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLSEIRPYLAGTGGG 180

Query: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPVIAAVQLIE 224
           ILE+IEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIP IAAVQLIE
Sbjct: 181 ILEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Sed0018517 vs. ExPASy TrEMBL
Match: A0A5A7U598 (NifU-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484G00030 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.1e-92
Identity = 190/228 (83.33%), Postives = 198/228 (86.84%), Query Frame = 0


Query: 1   MAAALSARAHGLTPTPPS-----SSSRRISAAHLPLFKSPFFSGQFCSGRFLRLNSHCTL 60
           M A  S RA     TP +     SSS   S +HL LFKS FF GQFCS RFLR N  CT 
Sbjct: 1   MVATFSTRAQPFKSTPIAATLYPSSSHPTSPSHLSLFKSSFFRGQFCSRRFLRFNPSCTR 60

Query: 61  RRRIGGSVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120
            RR+ G+V+SPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS
Sbjct: 61  IRRL-GNVISPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120

Query: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGG 180
           CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEK+L+EIRPYLAGTGGG
Sbjct: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLSEIRPYLAGTGGG 180

Query: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPVIAAVQLIE 224
           ILE+IEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIP IAAVQLIE
Sbjct: 181 ILEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Sed0018517 vs. ExPASy TrEMBL
Match: A0A1S3BRP8 (nifU-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492775 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.1e-92
Identity = 190/228 (83.33%), Postives = 198/228 (86.84%), Query Frame = 0


Query: 1   MAAALSARAHGLTPTPPS-----SSSRRISAAHLPLFKSPFFSGQFCSGRFLRLNSHCTL 60
           M A  S RA     TP +     SSS   S +HL LFKS FF GQFCS RFLR N  CT 
Sbjct: 1   MVATFSTRAQPFKSTPIAATLYPSSSHPTSPSHLSLFKSSFFRGQFCSRRFLRFNPSCTR 60

Query: 61  RRRIGGSVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120
            RR+ G+V+SPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS
Sbjct: 61  IRRL-GNVISPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGS 120

Query: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGG 180
           CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEK+L+EIRPYLAGTGGG
Sbjct: 121 CPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLSEIRPYLAGTGGG 180

Query: 181 ILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPVIAAVQLIE 224
           ILE+IEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIP IAAVQLIE
Sbjct: 181 ILEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Sed0018517 vs. TAIR 10
Match: AT4G25910.1 (NFU domain protein 3 )

HSP 1 Score: 264.2 bits (674), Expect = 9.3e-71
Identity = 143/192 (74.48%), Postives = 163/192 (84.90%), Query Frame = 0


Query: 34  SPFFSGQFCSGRFLRLNSHCTLRRR-IGGSVVSPSCVLPLTEENVEKVLDEVRPSLMADG 93
           S F  GQF    F  L     LR+R + G V   SCV+PLTEENVE+VLDEVRPSLMADG
Sbjct: 48  STFLRGQFQRIHFSWLQHTRPLRKRTVFGHV---SCVMPLTEENVERVLDEVRPSLMADG 107

Query: 94  GNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTET-GL 153
           GNVALHEIDGLVV+LKLQGACGSCPSS+MTLKMGIE+RLRDKIPEI+ VEQ +++ET GL
Sbjct: 108 GNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIPEIMSVEQFLESETGGL 167

Query: 154 ELNEENVEKLLAEIRPYLAGTGGGILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLRE 213
           ELN+EN+EK+L+E+RPYL+GTGGG LEL+EI  YVVKVRL+GPAAGVMTVRVALTQKLRE
Sbjct: 168 ELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAGVMTVRVALTQKLRE 227

Query: 214 KIPVIAAVQLIE 224
            IP I AVQL+E
Sbjct: 228 TIPSIGAVQLLE 236

[Close]

BLAST of Sed0018517 vs. TAIR 10
Match: AT5G49940.1 (NIFU-like protein 2 )

HSP 1 Score: 235.7 bits (600), Expect = 3.5e-62
Identity = 121/169 (71.60%), Postives = 144/169 (85.21%), Query Frame = 0


Query: 56  RRRIGGSVVSPSCVL--PLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGAC 115
           R ++  +V +P  +L  PLTEENVE VLDE+RP LM+DGGNVALHEIDG +V +KLQGAC
Sbjct: 67  RSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGAC 126

Query: 116 GSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTG 175
           GSCPSSTMT+KMGIE RL +KIPEI+ VE + D ETGLELNEEN+EK+L EIRPYL GT 
Sbjct: 127 GSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTA 186

Query: 176 GGILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPVIAAVQLI 223
            G L+L+EI+D +VK+R++GPAAGVMTVRVA+TQKLREKIP IAAVQLI
Sbjct: 187 DGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 235

[Close]

BLAST of Sed0018517 vs. TAIR 10
Match: AT5G49940.2 (NIFU-like protein 2 )

HSP 1 Score: 150.2 bits (378), Expect = 2.0e-36
Identity = 75/108 (69.44%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 56  RRRIGGSVVSPSCVL--PLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGAC 115
           R ++  +V +P  +L  PLTEENVE VLDE+RP LM+DGGNVALHEIDG +V +KLQGAC
Sbjct: 67  RSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGAC 126

Query: 116 GSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKL 162
           GSCPSSTMT+KMGIE RL +KIPEI+ VE + D ETGLELNEEN+EK+
Sbjct: 127 GSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKV 174

[Close]

BLAST of Sed0018517 vs. TAIR 10
Match: AT4G01940.1 (NFU domain protein 1 )

HSP 1 Score: 92.8 bits (229), Expect = 3.7e-19
Identity = 54/141 (38.30%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 72  LTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRL 131
           LT +NV+ VL++VRP L++DGGNV +  ++  VV LKLQGAC SCPSS+ T+ MGIE  L
Sbjct: 85  LTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVL 144

Query: 132 RDKIPEIL-EVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGILELIEIKDYVVKVR 191
           ++K  + L ++ Q+ D E   ++  E V   L  +RP +   GG + E++ ++     V+
Sbjct: 145 KEKFGDALKDIRQVFDEEV-KQITVEAVNAHLDILRPAIKNYGGSV-EVLSVEGEDCVVK 204

Query: 192 LSGPAAGVMTVRVALTQKLRE 212
             GP +  M ++ A+ +K ++
Sbjct: 205 YVGPESIGMGIQAAIKEKFKD 223

[Close]

BLAST of Sed0018517 vs. TAIR 10
Match: AT1G51390.1 (NFU domain protein 5 )

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-08
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 84  VRPSLMADGGNVAL--HEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEV 143
           +RPS+  DGG++     + +  +V L++QGAC  CPSS++TLK GIE  L   + E+  V
Sbjct: 199 IRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGV 258

Query: 144 EQIMDTE 149
           EQ  D E
Sbjct: 259 EQEFDGE 265

The following BLAST results are available for this feature:

BLAST of Sed0018517 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929559.1	6.6e-95	85.09	nifU-like protein 3, chloroplastic [Cucurbita moschata] >KAG6598879.1 NifU-like ...	[more]
XP_022997561.1	6.6e-95	85.09	nifU-like protein 3, chloroplastic [Cucurbita maxima] >XP_023545672.1 nifU-like ...	[more]
XP_038889481.1	1.1e-94	85.09	nifU-like protein 3, chloroplastic [Benincasa hispida]	[more]
KAG7029821.1	2.5e-94	84.65	NifU-like protein 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
TYK01397.1	1.8e-92	83.77	nifU-like protein 3 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0018517 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84RQ7	1.3e-69	74.48	NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU3 PE=2...	[more]
Q93W20	5.0e-61	71.60	NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU2 PE=1...	[more]
Q84LK7	2.7e-51	69.93	NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=N...	[more]
Q93W77	5.2e-18	38.30	NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU1 PE=1...	[more]
P33179	1.4e-15	62.32	Nitrogen fixation protein NifU (Fragment) OS=Anabaena sp. (strain L31) OX=29412 ...	[more]

BLAST of Sed0018517 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7T6	3.2e-95	85.09	nifU-like protein 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111492451 P...	[more]
A0A6J1EP39	3.2e-95	85.09	nifU-like protein 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436107...	[more]
A0A5D3BPX3	8.7e-93	83.77	NifU-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G0...	[more]
A0A5A7U598	1.1e-92	83.33	NifU-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484...	[more]
A0A1S3BRP8	1.1e-92	83.33	nifU-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492775 PE=3 ...	[more]

BLAST of Sed0018517 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25910.1	9.3e-71	74.48	NFU domain protein 3	[more]
AT5G49940.1	3.5e-62	71.60	NIFU-like protein 2	[more]
AT5G49940.2	2.0e-36	69.44	NIFU-like protein 2	[more]
AT4G01940.1	3.7e-19	38.30	NFU domain protein 1	[more]
AT1G51390.1	3.8e-08	43.28	NFU domain protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034904	Fe-S cluster assembly domain superfamily	GENE3D	3.30.300.130		coord: 152..223 e-value: 1.6E-21 score: 78.2
IPR034904	Fe-S cluster assembly domain superfamily	GENE3D	3.30.300.130		coord: 69..151 e-value: 2.1E-32 score: 113.0
IPR034904	Fe-S cluster assembly domain superfamily	SUPERFAMILY	117916	Fe-S cluster assembly (FSCA) domain-like	coord: 74..149
IPR034904	Fe-S cluster assembly domain superfamily	SUPERFAMILY	117916	Fe-S cluster assembly (FSCA) domain-like	coord: 152..222
IPR001075	NIF system FeS cluster assembly, NifU, C-terminal	PFAM	PF01106	NifU	coord: 77..142 e-value: 1.8E-26 score: 92.1 coord: 158..219 e-value: 8.6E-12 score: 45.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR11178:SF25	NIFU-LIKE PROTEIN 3, CHLOROPLASTIC	coord: 32..223
None	No IPR available	PANTHER	PTHR11178	IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED	coord: 32..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018517.1	Sed0018517.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0097428	protein maturation by iron-sulfur cluster transfer
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding