Sed0018488 (gene) Chayote v1

Overview


Name	Sed0018488
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG13: 1553966 .. 1555094 (+)
RNA-Seq Expression	Sed0018488
Synteny	Sed0018488

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATTACACCTTTAGGTTCTTGGAAGATTGTCTTCTTTGCTTTGCTTCTTCTTGCTTCCGATGTTTTTGCGAGGGACATCATTCGGGCCGACCTAATGGCTCGAGCATCCCGTAAGTGTTCTCTTTTCATAGCATCTTTTGTTGAATTATTACTCAACGAGAGTCTTGGCCTTGAGACTTTCATTAATATCAGCTAAATTATAACTTAATGAAAAAGTTAAGATTACAACTTATGGTACATGTTTATGGTTACAGTTTTCCTTATGTGCTTTATTGTGTTGTGTCTGTTCTGTTTAATGTTTGTGAAGATACAAATATAAATTAGTTTCTGTTTGGATGAAGAGTTATTTTGAGTACTGATTATAAATTAAGGACTTGCTGCCAATAACTTATTTGAATGTTGTTTCTTTTTTGTTTTGTTTGTTTTTTTGTAAAGGAGTTAGAAACAATAACTTGTTTGGATGTAGATTTGAAATGAAAAGTTATTAGAAGTAATTAAAAATAAATGATTAGAAATGAGTAGTTACAAATGAGTTATTTTAAATAGTTAGAACCAAATAATTAGAAATGAAGGGTTAGAAATAAATTATTAGAGATGAGTGATTATAAATGAAGAGTTATTTTGAGTAGTAAAAAAGATGAGTTGTTTTGAGTAGTTCAGTAACTCGTTTAAATATAGTTTTTAGATTAGTTAGTAAATACTCATTTCTAAATGCTCTATAAATTTAACAAACAAACACCGCCATAAATTTCCTCTCTCACACTTCTGTTTTACCAACATTATCCCCTCTTTACTTGTACAAGAGCTAACATACGGTTAGTGAATCACGCAAATTTATGCCGTCTTCTCATTCTTTTATTTATTTATTTATTTTCAATATTCGTTTCTACCATAACAATACAATTAGTCCATTAATTAATCATATGCTTAACATATTTAGATCGAAAATAGAGGAAAAAATGCATTGTTTTAGCTAATCCTTTTCTTCAATTTTGTTTTTAATAGGTGAGCTGAAGATAGTGATGAATGGAATGAAGGGCAGAAGATTAATTGCTCGAAAGTTAGATGGGGTTTGGAGGGGAAACTATGTAAAGCCTCCTCCTTCTCCCTCTTCTGGTTAA

mRNA sequence

ATGGCTTCCATTACACCTTTAGGTTCTTGGAAGATTGTCTTCTTTGCTTTGCTTCTTCTTGCTTCCGATGTTTTTGCGAGGGACATCATTCGGGCCGACCTAATGGCTCGAGCATCCCGTGAGCTGAAGATAGTGATGAATGGAATGAAGGGCAGAAGATTAATTGCTCGAAAGTTAGATGGGGTTTGGAGGGGAAACTATGTAAAGCCTCCTCCTTCTCCCTCTTCTGGTTAA

Coding sequence (CDS)

ATGGCTTCCATTACACCTTTAGGTTCTTGGAAGATTGTCTTCTTTGCTTTGCTTCTTCTTGCTTCCGATGTTTTTGCGAGGGACATCATTCGGGCCGACCTAATGGCTCGAGCATCCCGTGAGCTGAAGATAGTGATGAATGGAATGAAGGGCAGAAGATTAATTGCTCGAAAGTTAGATGGGGTTTGGAGGGGAAACTATGTAAAGCCTCCTCCTTCTCCCTCTTCTGGTTAA

Protein sequence

MASITPLGSWKIVFFALLLLASDVFARDIIRADLMARASRELKIVMNGMKGRRLIARKLDGVWRGNYVKPPPSPSSG

Homology

[Close]

BLAST of Sed0018488 vs. NCBI nr
Match: KAG6600178.1 (hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 5.2e-07
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 1  MASITPLGSWK-IVFFALLLLASDVFARDIIRADLMARASRELKIVMNGMKGRRLIARKL 60
          MAS +    WK +VFFALLLLA +V AR+++  +++AR   E+ I  N   GRRLIAR+L
Sbjct: 1  MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETN--VGRRLIARQL 60

Query: 61 DGVWRGNYVKPPP 73
          D  W GNY  PPP
Sbjct: 61 DTSWGGNYSPPPP 71

[Close]

BLAST of Sed0018488 vs. NCBI nr
Match: KAG7030841.1 (hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.3 bits (155), Expect = 5.2e-07
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 1  MASITPLGSWK-IVFFALLLLASDVFARDIIRADLMARASRELKIVMNGMKGRRLIARKL 60
          MAS +    WK +VFFALLLLA +V AR+++  +++AR   E+ I  N   GRRLIAR+L
Sbjct: 1  MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETN--VGRRLIARQL 60

Query: 61 DGVWRGNYVKPPP 73
          D  W GNY  PPP
Sbjct: 61 DTSWGGNYSPPPP 71

[Close]

BLAST of Sed0018488 vs. NCBI nr
Match: KAG6576804.1 (hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-06
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 1  MASITPLGSW-KIVFFALLLLASDVFARDIIRADLMARASRELKIVMNG-MKGRRLIARK 60
          MAS T L +W K+ F   LL+A  V AR++  A+++ R +RE+  + NG + G RLIAR+
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTAREMATMPNGVIGGSRLIARQ 60

Query: 61 LDGVWRGNYVKPPP 73
          LD  WRG+Y  PPP
Sbjct: 61 LDTAWRGHYSPPPP 74

[Close]

BLAST of Sed0018488 vs. NCBI nr
Match: KAG7014831.1 (hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-06
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 1  MASITPLGSW-KIVFFALLLLASDVFARDIIRADLMARASRELKIVMNG-MKGRRLIARK 60
          MAS T L +W K+ F   LL+A  V AR++  A+++ R +RE+  + NG + G RLIAR+
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTAREMATMPNGVIVGSRLIARQ 60

Query: 61 LDGVWRGNYVKPPP 73
          LD  WRG+Y  PPP
Sbjct: 61 LDTAWRGHYSPPPP 74

The following BLAST results are available for this feature:

BLAST of Sed0018488 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600178.1	5.2e-07	52.05	hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7030841.1	5.2e-07	52.05	hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6576804.1	2.6e-06	47.30	hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014831.1	2.6e-06	47.30	hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0018488 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0018488 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0018488 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018488.1	Sed0018488.1	mRNA