Sed0018455 (gene) Chayote v1

Overview


Name	Sed0018455
Type	gene
Organism	Sechium edule (Chayote v1)
Description	3'-5' exonuclease domain-containing protein
Location	LG12: 7752200 .. 7753784 (-)
RNA-Seq Expression	Sed0018455
Synteny	Sed0018455

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAGAAAAACTTGTGCAACAAGCCAAAACAATATAAAATAAAATAAAAACTTTTGCAACAAGCCAAAACAATATAAAATTAAAAAAAAAAAAGCGTCCACTACAAAACAAAACCCGTCGAGTTTCATTTCGTGGTTGCAGAAAATCCATAGCCATAATCGCGATGGTTTACACCGACATCTCCGACCACCAAGTCTCCGACGACAGCCACGACTACTACACCGTCTCCTTCGCCGACGACGACATCCTCACCCTCCTCACCGCCTCCCCCGCCATGGTCGACTCCTGGATCTCCCAGATCCTCCGCATCCACCGCCGCCGCCTCCACCGCCTCGTCGTCGGCCTCGACCTCGAGTGGCGCCCCAACTGCTCCCGCCACCAACACAACCCCGCCGCCACCCTCCAGCTCTGCGTCGGCCGCCGCTGCCTCATCTTCCAGCTCCTCTACGCGCCCTTCGTCCCCCACTCCCTCGCCGACTTCCTCGGCAACCCGTCCTTCACCTTCGTCGGCGTCGAAATCGCCCAGGACGCGCAGCGGCTGCTCGAGGAGTACGATCTCCACGTCGCCAACGCCGCGGATCTGAGAGATCTGGCGGCGGATGGAATGGCCGGGAGGGAGGATCTGCGAAGGGCGGGGCTGGCGCGACTGGCGAGCGAGGTTGTGGGCACCGAGATGAACAAGCCGATGAATGTGAGGCGCAGCCGGTGGGACAATTTCTACCTCAGCCACGATCAGGTACTCTACGCTGCTGTTGATGCTTTCATGTCCTTTGAGATCGGCAGGATTTTGACCATTACTTCTTCTGCTTGATTAGGGTTTCTTTCCAGGGTTTGTTCTGCTGCAGGGTGATCATATCCATGACTAGAAACTTGTTTTTGAAATCATGTTCATAATAAAATTAATTACTATGGAAAATTTAAAATCAAGGATTCCGACCCATGAAGGTATTATCTCTCTAAGAGTCAAATATCGATTCTCCAATCATAGTATGACCATGGTATTGATTTGAATAACCACCCAACAATACTACCCATTAGAAATAAGAAATTGAGATTATGTATGACTTGTAATTAAAAAGCTGTATGTTCCCTATCCTTTGAATTAGAAGGAAAAAGATAATGTCTGCCATTTTTCTATTCTACCAAAGGAAGGTTTTAATCTTTGATTCTATTTTGGTAAAAAAAAGAGAAAAGAATAAAGGTTGGTTTACAAATATATTTTAGGGAAATAAAAGAATAGAGTCTAATTTTGGACCTTCAACCTTACTAATAGCATAAAAATGGTCTCTAATTTTAAAAAAAAAATCATTATGATTATATAAGGCCATTTGTCAGGCAACATTTTGAATTTTTTTTTTTCTGCTCAACTCATTAAATATTTAATAATGATAACTTTTGGATTATTTTTAAGTTTTTAGCAAAGTTGTAACACTGAAATTGGTAATAATTAAGGGACAGAATAAAATTTTAACCTAACTTTTATTTTATATTCTTTTTGAAGGCATCCATCAATCTACTTTTAAAAACAAGTGCCAATCAATCTACTTTCTGAAAAAAAGTGCCAATCAATCTTTGAAAATC

mRNA sequence

AAAAAAAAGAAAAACTTGTGCAACAAGCCAAAACAATATAAAATAAAATAAAAACTTTTGCAACAAGCCAAAACAATATAAAATTAAAAAAAAAAAAGCGTCCACTACAAAACAAAACCCGTCGAGTTTCATTTCGTGGTTGCAGAAAATCCATAGCCATAATCGCGATGGTTTACACCGACATCTCCGACCACCAAGTCTCCGACGACAGCCACGACTACTACACCGTCTCCTTCGCCGACGACGACATCCTCACCCTCCTCACCGCCTCCCCCGCCATGGTCGACTCCTGGATCTCCCAGATCCTCCGCATCCACCGCCGCCGCCTCCACCGCCTCGTCGTCGGCCTCGACCTCGAGTGGCGCCCCAACTGCTCCCGCCACCAACACAACCCCGCCGCCACCCTCCAGCTCTGCGTCGGCCGCCGCTGCCTCATCTTCCAGCTCCTCTACGCGCCCTTCGTCCCCCACTCCCTCGCCGACTTCCTCGGCAACCCGTCCTTCACCTTCGTCGGCGTCGAAATCGCCCAGGACGCGCAGCGGCTGCTCGAGGAGTACGATCTCCACGTCGCCAACGCCGCGGATCTGAGAGATCTGGCGGCGGATGGAATGGCCGGGAGGGAGGATCTGCGAAGGGCGGGGCTGGCGCGACTGGCGAGCGAGGTTGTGGGCACCGAGATGAACAAGCCGATGAATGTGAGGCGCAGCCGGTGGGACAATTTCTACCTCAGCCACGATCAGGGTTTCTTTCCAGGGTTTGTTCTGCTGCAGGGTGATCATATCCATGACTAGAAACTTGTTTTTGAAATCATGTTCATAATAAAATTAATTACTATGGAAAATTTAAAATCAAGGATTCCGACCCATGAAGGTATTATCTCTCTAAGAGTCAAATATCGATTCTCCAATCATAGTATGACCATGGTATTGATTTGAATAACCACCCAACAATACTACCCATTAGAAATAAGAAATTGAGATTATGTATGACTTGTAATTAAAAAGCTGTATGTTCCCTATCCTTTGAATTAGAAGGAAAAAGATAATGTCTGCCATTTTTCTATTCTACCAAAGGAAGGTTTTAATCTTTGATTCTATTTTGGTAAAAAAAAGAGAAAAGAATAAAGGTTGGTTTACAAATATATTTTAGGGAAATAAAAGAATAGAGTCTAATTTTGGACCTTCAACCTTACTAATAGCATAAAAATGGTCTCTAATTTTAAAAAAAAAATCATTATGATTATATAAGGCCATTTGTCAGGCAACATTTTGAATTTTTTTTTTTCTGCTCAACTCATTAAATATTTAATAATGATAACTTTTGGATTATTTTTAAGTTTTTAGCAAAGTTGTAACACTGAAATTGGTAATAATTAAGGGACAGAATAAAATTTTAACCTAACTTTTATTTTATATTCTTTTTGAAGGCATCCATCAATCTACTTTTAAAAACAAGTGCCAATCAATCTACTTTCTGAAAAAAAGTGCCAATCAATCTTTGAAAATC

Coding sequence (CDS)

ATGGTTTACACCGACATCTCCGACCACCAAGTCTCCGACGACAGCCACGACTACTACACCGTCTCCTTCGCCGACGACGACATCCTCACCCTCCTCACCGCCTCCCCCGCCATGGTCGACTCCTGGATCTCCCAGATCCTCCGCATCCACCGCCGCCGCCTCCACCGCCTCGTCGTCGGCCTCGACCTCGAGTGGCGCCCCAACTGCTCCCGCCACCAACACAACCCCGCCGCCACCCTCCAGCTCTGCGTCGGCCGCCGCTGCCTCATCTTCCAGCTCCTCTACGCGCCCTTCGTCCCCCACTCCCTCGCCGACTTCCTCGGCAACCCGTCCTTCACCTTCGTCGGCGTCGAAATCGCCCAGGACGCGCAGCGGCTGCTCGAGGAGTACGATCTCCACGTCGCCAACGCCGCGGATCTGAGAGATCTGGCGGCGGATGGAATGGCCGGGAGGGAGGATCTGCGAAGGGCGGGGCTGGCGCGACTGGCGAGCGAGGTTGTGGGCACCGAGATGAACAAGCCGATGAATGTGAGGCGCAGCCGGTGGGACAATTTCTACCTCAGCCACGATCAGGGTTTCTTTCCAGGGTTTGTTCTGCTGCAGGGTGATCATATCCATGACTAG

Protein sequence

MVYTDISDHQVSDDSHDYYTVSFADDDILTLLTASPAMVDSWISQILRIHRRRLHRLVVGLDLEWRPNCSRHQHNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSFTFVGVEIAQDAQRLLEEYDLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVGTEMNKPMNVRRSRWDNFYLSHDQGFFPGFVLLQGDHIHD

Homology

[Close]

BLAST of Sed0018455 vs. NCBI nr
Match: KAE8651170.1 (hypothetical protein Csa_000755 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-57
Identity = 118/191 (61.78%), Postives = 143/191 (74.87%), Query Frame = 0


Query: 1   MVYTDISDHQVSDDSHDYYTVSFADDDILTLLTASPAMVDSWISQILRIHRRRLHRLVVG 60
           M    ISD Q+  +SHDYY ++F DD+ILTL+TASP+MVD WIS+ILRIHRRRLHRLVVG
Sbjct: 1   MATLTISDRQIPLNSHDYYDITFDDDEILTLVTASPSMVDMWISEILRIHRRRLHRLVVG 60

Query: 61  LDLEWRPNCSRHQHNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSFTFVGVEIA 120
           LD+EWRPN  RH  NP ATLQLCVGRRCLIFQL++A   P SL DFL + +FTFVGV I 
Sbjct: 61  LDVEWRPNFDRHFRNPVATLQLCVGRRCLIFQLIHASETPQSLIDFLEDDTFTFVGVGID 120

Query: 121 QDAQRLLEEYDLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVGTEMNKPMNVRRS 180
            D  +L  +YDL+VAN  DLR+LAAD M   ++ R AGL  L  EV+G E++KP NV+ S
Sbjct: 121 NDVLKLYNDYDLNVANTVDLRELAADEMQS-DEFRTAGLKTLGREVLGREIDKPRNVKLS 180

Query: 181 RWDNFYLSHDQ 192
           RWD  +L+  Q
Sbjct: 181 RWDRQWLNPAQ 190

[Close]

BLAST of Sed0018455 vs. NCBI nr
Match: XP_004136771.1 (Werner Syndrome-like exonuclease [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-57
Identity = 118/191 (61.78%), Postives = 143/191 (74.87%), Query Frame = 0


Query: 1   MVYTDISDHQVSDDSHDYYTVSFADDDILTLLTASPAMVDSWISQILRIHRRRLHRLVVG 60
           M    ISD Q+  +SHDYY ++F DD+ILTL+TASP+MVD WIS+ILRIHRRRLHRLVVG
Sbjct: 1   MATLTISDRQIPLNSHDYYDITFDDDEILTLVTASPSMVDMWISEILRIHRRRLHRLVVG 60

Query: 61  LDLEWRPNCSRHQHNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSFTFVGVEIA 120
           LD+EWRPN  RH  NP ATLQLCVGRRCLIFQL++A   P SL DFL + +FTFVGV I 
Sbjct: 61  LDVEWRPNFDRHFRNPVATLQLCVGRRCLIFQLIHASETPQSLIDFLEDDTFTFVGVGID 120

Query: 121 QDAQRLLEEYDLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVGTEMNKPMNVRRS 180
            D  +L  +YDL+VAN  DLR+LAAD M   ++ R AGL  L  EV+G E++KP NV+ S
Sbjct: 121 NDVLKLYNDYDLNVANTVDLRELAADEMQS-DEFRTAGLKTLGREVLGREIDKPRNVKLS 180

Query: 181 RWDNFYLSHDQ 192
           RWD  +L+  Q
Sbjct: 181 RWDRQWLNPAQ 190

[Close]

BLAST of Sed0018455 vs. NCBI nr
Match: KAB1222804.1 (Werner Syndrome-like exonuclease [Morella rubra])

HSP 1 Score: 228.0 bits (580), Expect = 7.3e-56
Identity = 115/191 (60.21%), Postives = 141/191 (73.82%), Query Frame = 0


Query: 1   MVYTDISDHQVSDDSHDYYTVSFADDDILTLLTASPAMVDSWISQILRIHRRRLHRLVVG 60
           M    I DHQ+ D++++ Y VS   DD+LTL+T SP+MVDSWIS I RIH RRLHRLVVG
Sbjct: 1   MASISIFDHQLPDNTYNLYVVSLDSDDVLTLVTHSPSMVDSWISDIYRIHSRRLHRLVVG 60

Query: 61  LDLEWRPNCSRHQHNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSFTFVGVEIA 120
           LD+EWRP+ +RH  NP ATLQLCVGRRCLIFQ++ AP+ P SL +FLG+ SFTFVGV I 
Sbjct: 61  LDVEWRPSFNRHVQNPVATLQLCVGRRCLIFQIVRAPYFPDSLIEFLGDGSFTFVGVGIE 120

Query: 121 QDAQRLLEEYDLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVGTEMNKPMNVRRS 180
            D ++LL++Y+L VAN  DLRDL  +    RE LR AGL +LA EV+G ++ KP  V  S
Sbjct: 121 SDVEKLLDDYELEVANVVDLRDLVEEEWGIRE-LRNAGLKQLAWEVLGKDIQKPRRVTLS 180

Query: 181 RWDNFYLSHDQ 192
           RWDN  LSH Q
Sbjct: 181 RWDNERLSHAQ 190

[Close]

BLAST of Sed0018455 vs. NCBI nr
Match: XP_022147765.1 (Werner Syndrome-like exonuclease, partial [Momordica charantia])

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-54
Identity = 111/181 (61.33%), Postives = 138/181 (76.24%), Query Frame = 0


Query: 11  VSDDSHDYYTVSFADDDILTLLTASPAMVDSWISQILRIHRRRLHRLVVGLDLEWRPNCS 70
           V+ +SH+ Y ++F  D I T +T+SP MVD WIS+ILR HRRRLHRL+VGLD+EWRPN +
Sbjct: 2   VNCNSHNCYDITFDSDQIKTTITSSPYMVDHWISRILRFHRRRLHRLLVGLDVEWRPNFN 61

Query: 71  RHQHNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSFTFVGVEIAQDAQRLLEEY 130
           R + NPAATLQLCVGRRCLIFQL++AP +PHSL  FLG+ +FTFVGV I QDA++L ++Y
Sbjct: 62  RSRRNPAATLQLCVGRRCLIFQLIHAPEIPHSLLHFLGDETFTFVGVGIDQDARKLFDDY 121

Query: 131 DLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVGTEMNKPMNVRRSRWDNFYLSHD 190
           DL V NA DLR +A D   GR DLR AGL  LA E++G E+ KP  V  SRWD+ YL+  
Sbjct: 122 DLTVNNAVDLRSMAVD-RTGRRDLRNAGLKDLAREILGREIAKPKAVTMSRWDDEYLTSA 181

Query: 191 Q 192
           Q
Sbjct: 182 Q 181

[Close]

BLAST of Sed0018455 vs. NCBI nr
Match: XP_018843659.1 (Werner Syndrome-like exonuclease [Juglans regia])

HSP 1 Score: 223.0 bits (567), Expect = 2.4e-54
Identity = 111/183 (60.66%), Postives = 136/183 (74.32%), Query Frame = 0


Query: 6   ISDHQVSDDSHDYYTVSFADDDILTLLTASPAMVDSWISQILRIHRRRLHRLVVGLDLEW 65
           I D+++  D+H+ Y VSF  D I TLLT SP++VDSWIS I RIHRRRLHRLVVGLDLEW
Sbjct: 5   IYDYELPFDTHNLYDVSFDSDQIGTLLTCSPSLVDSWISDIYRIHRRRLHRLVVGLDLEW 64

Query: 66  RPNCSRHQHNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSFTFVGVEIAQDAQR 125
           RP+ +RH  NP ATLQLCVGRRCLIFQL++AP++P SL DFLG   FTFVGV I  D ++
Sbjct: 65  RPSFNRHVQNPVATLQLCVGRRCLIFQLIHAPYIPQSLVDFLGQTDFTFVGVGIKSDVEK 124

Query: 126 LLEEYDLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVGTEMNKPMNVRRSRWDNF 185
           LL++Y L VA   DLR LA + + G   LR AGL +LA EV+G  + KP N+  SRWDN 
Sbjct: 125 LLDDYGLEVACVVDLRLLAVEEL-GTTQLRNAGLKQLAWEVLGKRIEKPRNITMSRWDNE 184

Query: 186 YLS 189
           +L+
Sbjct: 185 WLT 186

[Close]

BLAST of Sed0018455 vs. ExPASy Swiss-Prot
Match: O09053 (Werner syndrome ATP-dependent helicase homolog OS=Mus musculus OX=10090 GN=Wrn PE=1 SV=3)

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-12
Identity = 43/138 (31.16%), Postives = 68/138 (49.28%), Query Frame = 0


Query: 58  VVGLDLEWRPNCSRHQHNPAATLQLCVGR-RCLIFQLLYAPFVPHSLADFLGNPSFTFVG 117
           VVG D+EW P     + +  A +QLCV   +C +F +      P  L   L N S    G
Sbjct: 72  VVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKKAG 131

Query: 118 VEIAQDAQRLLEEYDLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVGTEMNKPMN 177
           V I  D  +LL ++D+ + +  +L D+A + +   E     GL +    V+G ++ K  +
Sbjct: 132 VGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVK---HVLGKQLLKDKS 191

Query: 178 VRRSRWDNFYLSHDQGFF 195
           +R S W NF L+ DQ  +
Sbjct: 192 IRCSNWSNFPLTEDQKLY 206

[Close]

BLAST of Sed0018455 vs. ExPASy Swiss-Prot
Match: Q14191 (Werner syndrome ATP-dependent helicase OS=Homo sapiens OX=9606 GN=WRN PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 8.8e-12
Identity = 46/157 (29.30%), Postives = 73/157 (46.50%), Query Frame = 0


Query: 58  VVGLDLEWRPNCSRHQHNPAATLQLCVGR-RCLIFQLLYAPFVPHSLADFLGNPSFTFVG 117
           VVG D+EW P  +R +    A +QLCV   +C +F +      P  L   L N +    G
Sbjct: 78  VVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAG 137

Query: 118 VEIAQDAQRLLEEYDLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVGTEMNKPMN 177
           V I  D  +LL ++D+ + N  +L D+A   +   E      L  L   ++G ++ K  +
Sbjct: 138 VGIEGDQWKLLRDFDIKLKNFVELTDVANKKLKCTETW---SLNSLVKHLLGKQLLKDKS 197

Query: 178 VRRSRWDNFYLSHDQGF------FPGFVLLQGDHIHD 208
           +R S W  F L+ DQ        + GF++ +   I D
Sbjct: 198 IRCSNWSKFPLTEDQKLYAATDAYAGFIIYRNLEILD 231

[Close]

BLAST of Sed0018455 vs. ExPASy Swiss-Prot
Match: Q9NVH0 (Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens OX=9606 GN=EXD2 PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 45/141 (31.91%), Postives = 71/141 (50.35%), Query Frame = 0


Query: 58  VVGLDLEWRPNCSRHQHNPAATLQLC-VGRRCLIFQL----LYAPFVPHSLADFLGNPSF 117
           V+G+D EW       + +P + LQ+      C++ +L         +P +L D L + + 
Sbjct: 104 VLGIDCEWVN--LEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTI 163

Query: 118 TFVGVEIAQDAQRLLEEYDLHVANAADLRDLAADGMAGREDLRRAGLA--RLASEVVGTE 177
             VGV  ++DA +LL++Y L V    DLR LA   M  R +L   GL+   LA  V+   
Sbjct: 164 LKVGVGCSEDASKLLQDYGLVVRGCLDLRYLA---MRQRNNLLCNGLSLKSLAETVLNFP 223

Query: 178 MNKPMNVRRSRWDNFYLSHDQ 192
           ++K + +R S WD   L+ DQ
Sbjct: 224 LDKSLLLRCSNWDAETLTEDQ 239

[Close]

BLAST of Sed0018455 vs. ExPASy Swiss-Prot
Match: Q9VGN7 (Exonuclease 3'-5' domain-containing protein 2 OS=Drosophila melanogaster OX=7227 GN=Exd2 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-06
Identity = 43/143 (30.07%), Postives = 66/143 (46.15%), Query Frame = 0


Query: 42  WISQILRIHRRRLHRLVVGLDLEWRPNCSRHQHNPAATLQLCVGR-RCLIFQLLYAPFVP 101
           W+   L+ H +     V+G D EW          P A LQL   R  C +F+L +   +P
Sbjct: 65  WVLNELKNHCQTFK--VLGFDCEW--ITVGGSRRPVALLQLSSHRGLCALFRLCHMKQIP 124

Query: 102 HSLADFLGNPSFTFVGVEIAQDAQRLLEEYDLHVANAADLRDLAADGMAGREDLRRAGLA 161
             L + L + S   VGV   +DA +L  +Y + VA+  DLR L    MAG    +  GL 
Sbjct: 125 QDLRELLEDDSVIKVGVAPQEDAMKLSHDYGVGVASTLDLRFLCV--MAGH---KPEGLG 184

Query: 162 RLASEVVGTEMNKPMNVRRSRWD 184
           +L+   +   ++K   +  S W+
Sbjct: 185 KLSKTHLNYTLDKHWRLACSNWE 198

[Close]

BLAST of Sed0018455 vs. ExPASy Swiss-Prot
Match: Q8VEG4 (Exonuclease 3'-5' domain-containing protein 2 OS=Mus musculus OX=10090 GN=Exd2 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 2.7e-05
Identity = 44/141 (31.21%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 58  VVGLDLEWRPNCSRHQHNPAATLQLC--VGRRCLIF--QLLY-APFVPHSLADFLGNPSF 117
           V+G+D EW       + +P + LQ+    G   L+   +L+Y    +P +L D L + + 
Sbjct: 133 VLGIDCEWVN--LEGKASPLSLLQMASPSGFCALVRLPRLIYGGRTLPRTLLDILADGAI 192

Query: 118 TFVGVEIAQDAQRLLEEYDLHVANAADLRDLAADGMAGREDLRRAGLA--RLASEVVGTE 177
             VGV  ++DA +LL++Y L V    DLR LA   M    ++   GL+   LA  ++   
Sbjct: 193 LKVGVGCSEDANKLLQDYGLIVRGCLDLRYLA---MKQGNNILCNGLSLKSLAETILNFP 252

Query: 178 MNKPMNVRRSRWDNFYLSHDQ 192
           ++K + +R S WD   L+ DQ
Sbjct: 253 LDKSLLLRCSNWDAENLTEDQ 268

[Close]

BLAST of Sed0018455 vs. ExPASy TrEMBL
Match: A0A0A0LHC5 (3'-5' exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G819830 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 6.5e-58
Identity = 118/191 (61.78%), Postives = 143/191 (74.87%), Query Frame = 0


Query: 1   MVYTDISDHQVSDDSHDYYTVSFADDDILTLLTASPAMVDSWISQILRIHRRRLHRLVVG 60
           M    ISD Q+  +SHDYY ++F DD+ILTL+TASP+MVD WIS+ILRIHRRRLHRLVVG
Sbjct: 1   MATLTISDRQIPLNSHDYYDITFDDDEILTLVTASPSMVDMWISEILRIHRRRLHRLVVG 60

Query: 61  LDLEWRPNCSRHQHNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSFTFVGVEIA 120
           LD+EWRPN  RH  NP ATLQLCVGRRCLIFQL++A   P SL DFL + +FTFVGV I 
Sbjct: 61  LDVEWRPNFDRHFRNPVATLQLCVGRRCLIFQLIHASETPQSLIDFLEDDTFTFVGVGID 120

Query: 121 QDAQRLLEEYDLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVGTEMNKPMNVRRS 180
            D  +L  +YDL+VAN  DLR+LAAD M   ++ R AGL  L  EV+G E++KP NV+ S
Sbjct: 121 NDVLKLYNDYDLNVANTVDLRELAADEMQS-DEFRTAGLKTLGREVLGREIDKPRNVKLS 180

Query: 181 RWDNFYLSHDQ 192
           RWD  +L+  Q
Sbjct: 181 RWDRQWLNPAQ 190

[Close]

BLAST of Sed0018455 vs. ExPASy TrEMBL
Match: A0A6A1WBZ0 (Werner Syndrome-like exonuclease OS=Morella rubra OX=262757 GN=CJ030_MR2G022295 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 3.6e-56
Identity = 115/191 (60.21%), Postives = 141/191 (73.82%), Query Frame = 0


Query: 1   MVYTDISDHQVSDDSHDYYTVSFADDDILTLLTASPAMVDSWISQILRIHRRRLHRLVVG 60
           M    I DHQ+ D++++ Y VS   DD+LTL+T SP+MVDSWIS I RIH RRLHRLVVG
Sbjct: 1   MASISIFDHQLPDNTYNLYVVSLDSDDVLTLVTHSPSMVDSWISDIYRIHSRRLHRLVVG 60

Query: 61  LDLEWRPNCSRHQHNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSFTFVGVEIA 120
           LD+EWRP+ +RH  NP ATLQLCVGRRCLIFQ++ AP+ P SL +FLG+ SFTFVGV I 
Sbjct: 61  LDVEWRPSFNRHVQNPVATLQLCVGRRCLIFQIVRAPYFPDSLIEFLGDGSFTFVGVGIE 120

Query: 121 QDAQRLLEEYDLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVGTEMNKPMNVRRS 180
            D ++LL++Y+L VAN  DLRDL  +    RE LR AGL +LA EV+G ++ KP  V  S
Sbjct: 121 SDVEKLLDDYELEVANVVDLRDLVEEEWGIRE-LRNAGLKQLAWEVLGKDIQKPRRVTLS 180

Query: 181 RWDNFYLSHDQ 192
           RWDN  LSH Q
Sbjct: 181 RWDNERLSHAQ 190

[Close]

BLAST of Sed0018455 vs. ExPASy TrEMBL
Match: A0A6J1D121 (Werner Syndrome-like exonuclease OS=Momordica charantia OX=3673 GN=LOC111016622 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 8.8e-55
Identity = 111/181 (61.33%), Postives = 138/181 (76.24%), Query Frame = 0


Query: 11  VSDDSHDYYTVSFADDDILTLLTASPAMVDSWISQILRIHRRRLHRLVVGLDLEWRPNCS 70
           V+ +SH+ Y ++F  D I T +T+SP MVD WIS+ILR HRRRLHRL+VGLD+EWRPN +
Sbjct: 2   VNCNSHNCYDITFDSDQIKTTITSSPYMVDHWISRILRFHRRRLHRLLVGLDVEWRPNFN 61

Query: 71  RHQHNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSFTFVGVEIAQDAQRLLEEY 130
           R + NPAATLQLCVGRRCLIFQL++AP +PHSL  FLG+ +FTFVGV I QDA++L ++Y
Sbjct: 62  RSRRNPAATLQLCVGRRCLIFQLIHAPEIPHSLLHFLGDETFTFVGVGIDQDARKLFDDY 121

Query: 131 DLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVGTEMNKPMNVRRSRWDNFYLSHD 190
           DL V NA DLR +A D   GR DLR AGL  LA E++G E+ KP  V  SRWD+ YL+  
Sbjct: 122 DLTVNNAVDLRSMAVD-RTGRRDLRNAGLKDLAREILGREIAKPKAVTMSRWDDEYLTSA 181

Query: 191 Q 192
           Q
Sbjct: 182 Q 181

[Close]

BLAST of Sed0018455 vs. ExPASy TrEMBL
Match: A0A2I4GID7 (Werner Syndrome-like exonuclease OS=Juglans regia OX=51240 GN=LOC109008130 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.1e-54
Identity = 111/183 (60.66%), Postives = 136/183 (74.32%), Query Frame = 0


Query: 6   ISDHQVSDDSHDYYTVSFADDDILTLLTASPAMVDSWISQILRIHRRRLHRLVVGLDLEW 65
           I D+++  D+H+ Y VSF  D I TLLT SP++VDSWIS I RIHRRRLHRLVVGLDLEW
Sbjct: 5   IYDYELPFDTHNLYDVSFDSDQIGTLLTCSPSLVDSWISDIYRIHRRRLHRLVVGLDLEW 64

Query: 66  RPNCSRHQHNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSFTFVGVEIAQDAQR 125
           RP+ +RH  NP ATLQLCVGRRCLIFQL++AP++P SL DFLG   FTFVGV I  D ++
Sbjct: 65  RPSFNRHVQNPVATLQLCVGRRCLIFQLIHAPYIPQSLVDFLGQTDFTFVGVGIKSDVEK 124

Query: 126 LLEEYDLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVGTEMNKPMNVRRSRWDNF 185
           LL++Y L VA   DLR LA + + G   LR AGL +LA EV+G  + KP N+  SRWDN 
Sbjct: 125 LLDDYGLEVACVVDLRLLAVEEL-GTTQLRNAGLKQLAWEVLGKRIEKPRNITMSRWDNE 184

Query: 186 YLS 189
           +L+
Sbjct: 185 WLT 186

[Close]

BLAST of Sed0018455 vs. ExPASy TrEMBL
Match: A0A7J7HKA8 (3'-5' exonuclease domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_010358 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 2.5e-54
Identity = 112/186 (60.22%), Postives = 136/186 (73.12%), Query Frame = 0


Query: 6   ISDHQVSDDSHDYYTVSFADDDILTLLTASPAMVDSWISQILRIHRRRLHRLVVGLDLEW 65
           I DHQ+ DD+H+ Y V+F  D I TL+T SP  VDSWIS+I  IHRRRLHRL+VGLD+EW
Sbjct: 10  IVDHQLPDDTHNLYDVTFFTDLIHTLVTRSPFFVDSWISEITAIHRRRLHRLIVGLDIEW 69

Query: 66  RPNCSRHQHNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSFTFVGVEIAQDAQR 125
           RPN  R+  NPAATLQLCVGRRCLIFQLLY+P +P SL DFL NP +TFVGV I  D ++
Sbjct: 70  RPN-DRYSDNPAATLQLCVGRRCLIFQLLYSPEIPQSLIDFLNNPIYTFVGVGINSDVEK 129

Query: 126 LLEEYDLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVGTEMNKPMNVRRSRWDNF 185
           L+E+Y L V    DLR LAAD   G  +LR AGL  +A EV+G  ++KP  + RSRWDN 
Sbjct: 130 LIEDYGLSVGTTVDLRTLAAD--CGMTELRNAGLKTMAREVLGKVIDKPQRITRSRWDNE 189

Query: 186 YLSHDQ 192
           +L  +Q
Sbjct: 190 WLYPEQ 192

[Close]

BLAST of Sed0018455 vs. TAIR 10
Match: AT3G12410.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-19
Identity = 66/200 (33.00%), Postives = 95/200 (47.50%), Query Frame = 0


Query: 12  SDDSHDYYTVSFADDDILTLLTASPAMVDSWISQILRIHRRRLHRLVVGLDLEW------ 71
           S ++H  Y+V F  D+ +  +T   +++  WI  +L  +R   H LVVG+ ++W      
Sbjct: 11  SYNTHLEYSVDFFGDEFIVTVTWDSSVISRWIRNVLFNNRFSSHPLVVGVGVQWTPFSYY 70

Query: 72  ---RPN--------CSRHQHNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSFTF 131
              RPN           +  NPA  LQLCVG RCLI QL Y   VP++L  FL +P  TF
Sbjct: 71  SDPRPNNYYADPPPIRYYSDNPADILQLCVGNRCLIIQLGYCDQVPNNLRSFLADPETTF 130

Query: 132 VGVEIAQDAQRLLE-EYDLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVGTE--M 191
           VGV   QDA +L    + L +    D+R    D       +RR+    +  E +G +  M
Sbjct: 131 VGVWNGQDAGKLARCCHQLEIGELLDIRRYVTDSWG--RSMRRSSFEEIVEECMGYQGVM 190

[Close]

BLAST of Sed0018455 vs. TAIR 10
Match: AT3G12460.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-19
Identity = 61/201 (30.35%), Postives = 93/201 (46.27%), Query Frame = 0


Query: 19  YTVSFADDDILTLLTASPAMVDSWISQILRIHRRRLHRLVVGLDLEWRPN---------- 78
           Y+V F  +++   +T  P+++  WI  +   +R   H LVVG+ ++W P+          
Sbjct: 17  YSVDFFGEELFVTVTPDPSVIGQWIHDVFFHNRLSSHPLVVGVGVQWTPSGYHPASPPVS 76

Query: 79  ----------------CSRHQHNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSF 138
                                  PA TLQLCVG RC+I QL Y   VP  L +FL +   
Sbjct: 77  YRSDSSPDSYRSDSPPVFYSSDPPADTLQLCVGNRCIIIQLRYCERVPQVLRNFLADRDN 136

Query: 139 TFVGVEIAQDAQRL-LEEYDLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVG-TE 192
           TFVG+  +QDA +L    + L +A   DLR+  +D  +GR  +    L ++  E +G   
Sbjct: 137 TFVGIWNSQDAGKLERSRHQLEIAELMDLREFVSDS-SGRRSMYNYSLEKIVEENLGYPG 196

[Close]

BLAST of Sed0018455 vs. TAIR 10
Match: AT3G12430.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 91.7 bits (226), Expect = 7.6e-19
Identity = 61/201 (30.35%), Postives = 98/201 (48.76%), Query Frame = 0


Query: 19  YTVSFADDDILTLLTASPAMVDSWISQILRIHRRRLHRLVVGLDLEWRPN---------- 78
           Y V F  ++ + ++T  P+++  WI  +L  +R   H LVVG+ ++W P+          
Sbjct: 17  YLVDFFGEEFIVIVTPDPSVIGQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVR 76

Query: 79  ----------------CSRHQHNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSF 138
                             R    PA TLQLCVG RC+I QL +   VP  L +FL +  +
Sbjct: 77  YRSDSPPVRYRSDSPRVRRRFDPPADTLQLCVGNRCIIIQLSHCERVPQVLRNFLADRDY 136

Query: 139 TFVGVEIAQDAQRL-LEEYDLHVANAADLRDLAADGMAGREDLRRAGLARLASEVVG-TE 192
           TFVG+  +QDA +L   +++L +A   DLR   +D  +GR  ++R    ++  E +G + 
Sbjct: 137 TFVGIWNSQDAGKLKRSKHELEIAVLLDLRKFVSDS-SGR-TMKRCSFEKIVEENLGHSG 196

[Close]

BLAST of Sed0018455 vs. TAIR 10
Match: AT3G12470.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-17
Identity = 60/185 (32.43%), Postives = 92/185 (49.73%), Query Frame = 0


Query: 15  SHDYYTVSFADDDILTLLTASPAMVDSWISQILRIHRRR-LHRLVVGLDLEWRPNCSRHQ 74
           +H  + V F  DD++  +T + +++  WI  +   +R   +H LVVG+ ++WRP+ S   
Sbjct: 13  THQKHFVDFFGDDLIVTVTPTASVIRRWIRSVRSYNRNHSVHPLVVGIGVQWRPD-SSDP 72

Query: 75  HNPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSFTFVGVEIAQDAQRLLE-EYDL 134
             P  TLQLCVG RCLI QL Y   +P  L  FL +P  TFVGV   QD ++L +  + +
Sbjct: 73  DPPPKTLQLCVGSRCLIIQLGYNYGLPKVLRTFLADPKTTFVGVWNGQDQKKLEKCRHRV 132

Query: 135 HVANAADLRDLAADGMAGR------EDLRRAGLARLASEVVGTEMNKPMNVRRSRWDNFY 192
            +    D+R    D    R      E + +  L R     VG  ++    +  S W  + 
Sbjct: 133 EIGKLLDIRMFVRDSRGARMCFCSFEQIVKERLGR-----VGVRLDPA--ICMSDWGVYN 189

[Close]

BLAST of Sed0018455 vs. TAIR 10
Match: AT2G36110.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-15
Identity = 57/179 (31.84%), Postives = 84/179 (46.93%), Query Frame = 0


Query: 16  HDYYTVSFADDDILTLLTASPAMVDSWISQILRIHR-RRLHRLVVGLDLEWRPNCSRHQH 75
           H+   + F  + ++  +T + + +  WI  I    R R  H LVVGLD++W P  S    
Sbjct: 14  HENRYIDFFGERLIVTVTHTTSTIRRWIHSIRFFSRLRSSHPLVVGLDVQWTPGGS---D 73

Query: 76  NPAATLQLCVGRRCLIFQLLYAPFVPHSLADFLGNPSFTFVGVEIAQDAQRLLE-EYDLH 135
            P   LQLCVG RCLI QL +   +P  L  FL + + TFVGV  +QD  +L    + L 
Sbjct: 74  PPPDILQLCVGNRCLIIQLSHCKRIPEVLRSFLEDETITFVGVWNSQDQGKLERFRHQLE 133

Query: 136 VANAADLRDLAADGMAGREDLRRAGLARLASEVVGTE-MNKPMNVRRSRWDNFYLSHDQ 192
           +    D+R            L  +   ++  E +G + + K   +  S W    LSHDQ
Sbjct: 134 IWRLLDIRHYLP------TRLLNSSFEKIVEECLGYKGVRKDKEICMSNWGARSLSHDQ 183

The following BLAST results are available for this feature:

BLAST of Sed0018455 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651170.1	1.3e-57	61.78	hypothetical protein Csa_000755 [Cucumis sativus]	[more]
XP_004136771.1	1.3e-57	61.78	Werner Syndrome-like exonuclease [Cucumis sativus]	[more]
KAB1222804.1	7.3e-56	60.21	Werner Syndrome-like exonuclease [Morella rubra]	[more]
XP_022147765.1	1.8e-54	61.33	Werner Syndrome-like exonuclease, partial [Momordica charantia]	[more]
XP_018843659.1	2.4e-54	60.66	Werner Syndrome-like exonuclease [Juglans regia]	[more]

BLAST of Sed0018455 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O09053	3.0e-12	31.16	Werner syndrome ATP-dependent helicase homolog OS=Mus musculus OX=10090 GN=Wrn P...	[more]
Q14191	8.8e-12	29.30	Werner syndrome ATP-dependent helicase OS=Homo sapiens OX=9606 GN=WRN PE=1 SV=2	[more]
Q9NVH0	1.1e-06	31.91	Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens OX=9606 GN=EXD2 PE...	[more]
Q9VGN7	1.5e-06	30.07	Exonuclease 3'-5' domain-containing protein 2 OS=Drosophila melanogaster OX=7227...	[more]
Q8VEG4	2.7e-05	31.21	Exonuclease 3'-5' domain-containing protein 2 OS=Mus musculus OX=10090 GN=Exd2 P...	[more]

BLAST of Sed0018455 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHC5	6.5e-58	61.78	3'-5' exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G...	[more]
A0A6A1WBZ0	3.6e-56	60.21	Werner Syndrome-like exonuclease OS=Morella rubra OX=262757 GN=CJ030_MR2G022295 ...	[more]
A0A6J1D121	8.8e-55	61.33	Werner Syndrome-like exonuclease OS=Momordica charantia OX=3673 GN=LOC111016622 ...	[more]
A0A2I4GID7	1.1e-54	60.66	Werner Syndrome-like exonuclease OS=Juglans regia OX=51240 GN=LOC109008130 PE=4 ...	[more]
A0A7J7HKA8	2.5e-54	60.22	3'-5' exonuclease domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC8...	[more]

BLAST of Sed0018455 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12410.1	1.5e-19	33.00	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G12460.1	3.4e-19	30.35	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G12430.1	7.6e-19	30.35	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G12470.1	1.4e-17	32.43	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G36110.1	1.8e-15	31.84	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 16..192 e-value: 5.5E-45 score: 155.3
IPR002562	3'-5' exonuclease domain	PFAM	PF01612	DNA_pol_A_exo1	coord: 50..191 e-value: 6.9E-10 score: 38.9
None	No IPR available	PANTHER	PTHR13620:SF65	OS01G0660800 PROTEIN	coord: 10..191
None	No IPR available	PANTHER	PTHR13620	3-5 EXONUCLEASE	coord: 10..191
None	No IPR available	CDD	cd06141	WRN_exo	coord: 33..191 e-value: 6.0481E-49 score: 155.429
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 41..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018455.1	Sed0018455.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding