Sed0018337 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CAAACTCTCTTATAATCTTCTACACAAAAACACCAACTTCTCTCTTAGCCATGTCCTCAGCCCACAACAAGAGACAAAAGCCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTGTTCAGATCCCGAGATGGTGGAAGGAGGCGAGACGAAGCGATAGATGATACGCGAAAGGTGTGGCCGAGCGATGGCGACAAAGGCCGACACTGGGTGGCCGAGCCTGGCATCGATAGGAAGGCTAAGGCTTACATCGAGAAGATCCATACTCAAATCCGATCATTCGAAACCGAATGA CAAACTCTCTTATAATCTTCTACACAAAAACACCAACTTCTCTCTTAGCCATGTCCTCAGCCCACAACAAGAGACAAAAGCCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTGTTCAGATCCCGAGATGGTGGAAGGAGGCGAGACGAAGCGATAGATGATACGCGAAAGGTGTGGCCGAGCGATGGCGACAAAGGCCGACACTGGGTGGCCGAGCCTGGCATCGATAGGAAGGCTAAGGCTTACATCGAGAAGATCCATACTCAAATCCGATCATTCGAAACCGAATGA ATGTCCTCAGCCCACAACAAGAGACAAAAGCCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTGTTCAGATCCCGAGATGGTGGAAGGAGGCGAGACGAAGCGATAGATGATACGCGAAAGGTGTGGCCGAGCGATGGCGACAAAGGCCGACACTGGGTGGCCGAGCCTGGCATCGATAGGAAGGCTAAGGCTTACATCGAGAAGATCCATACTCAAATCCGATCATTCGAAACCGAATGA MSSAHNKRQKPKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIEKIHTQIRSFETE Homology
BLAST of Sed0018337 vs. NCBI nr
Match: KAG6586063.1 (hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29 Identity = 66/81 (81.48%), Postives = 72/81 (88.89%), Query Frame = 0
BLAST of Sed0018337 vs. NCBI nr
Match: KAA0056089.1 (hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ96428.1 hypothetical protein E5676_scaffold546G00610 [Cucumis melo var. makuwa]) HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27 Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 0
BLAST of Sed0018337 vs. NCBI nr
Match: KAG6599163.1 (hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 112.8 bits (281), Expect = 1.3e-21 Identity = 54/79 (68.35%), Postives = 68/79 (86.08%), Query Frame = 0
BLAST of Sed0018337 vs. NCBI nr
Match: XP_021898970.1 (uncharacterized protein LOC110815469 [Carica papaya]) HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10 Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 0
BLAST of Sed0018337 vs. NCBI nr
Match: XP_010094905.1 (uncharacterized protein LOC21405464 [Morus notabilis] >EXB57548.1 hypothetical protein L484_022654 [Morus notabilis]) HSP 1 Score: 74.7 bits (182), Expect = 4.1e-10 Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 0
BLAST of Sed0018337 vs. ExPASy TrEMBL
Match: A0A5D3BDY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00610 PE=4 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 7.9e-28 Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 0
BLAST of Sed0018337 vs. ExPASy TrEMBL
Match: A0A0A0LJ24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 1.0e-27 Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0
BLAST of Sed0018337 vs. ExPASy TrEMBL
Match: W9R5Q4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022654 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 2.0e-10 Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 0
BLAST of Sed0018337 vs. ExPASy TrEMBL
Match: A0A067E306 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040544mg PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 9.8e-10 Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 0
BLAST of Sed0018337 vs. ExPASy TrEMBL
Match: V4SLM0 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 9.8e-10 Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 0
BLAST of Sed0018337 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08 Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 0
BLAST of Sed0018337 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.4 bits (124), Expect = 2.0e-07 Identity = 27/42 (64.29%), Postives = 30/42 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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