Sed0018337 (gene) Chayote v1

Overview


Name	Sed0018337
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG11: 4113119 .. 4113414 (+)
RNA-Seq Expression	Sed0018337
Synteny	Sed0018337

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACTCTCTTATAATCTTCTACACAAAAACACCAACTTCTCTCTTAGCCATGTCCTCAGCCCACAACAAGAGACAAAAGCCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTGTTCAGATCCCGAGATGGTGGAAGGAGGCGAGACGAAGCGATAGATGATACGCGAAAGGTGTGGCCGAGCGATGGCGACAAAGGCCGACACTGGGTGGCCGAGCCTGGCATCGATAGGAAGGCTAAGGCTTACATCGAGAAGATCCATACTCAAATCCGATCATTCGAAACCGAATGA

mRNA sequence

CAAACTCTCTTATAATCTTCTACACAAAAACACCAACTTCTCTCTTAGCCATGTCCTCAGCCCACAACAAGAGACAAAAGCCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTGTTCAGATCCCGAGATGGTGGAAGGAGGCGAGACGAAGCGATAGATGATACGCGAAAGGTGTGGCCGAGCGATGGCGACAAAGGCCGACACTGGGTGGCCGAGCCTGGCATCGATAGGAAGGCTAAGGCTTACATCGAGAAGATCCATACTCAAATCCGATCATTCGAAACCGAATGA

Coding sequence (CDS)

ATGTCCTCAGCCCACAACAAGAGACAAAAGCCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTGTTCAGATCCCGAGATGGTGGAAGGAGGCGAGACGAAGCGATAGATGATACGCGAAAGGTGTGGCCGAGCGATGGCGACAAAGGCCGACACTGGGTGGCCGAGCCTGGCATCGATAGGAAGGCTAAGGCTTACATCGAGAAGATCCATACTCAAATCCGATCATTCGAAACCGAATGA

Protein sequence

MSSAHNKRQKPKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIEKIHTQIRSFETE

Homology

[Close]

BLAST of Sed0018337 vs. NCBI nr
Match: KAG6586063.1 (hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 66/81 (81.48%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MSSAHNKRQKPKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDKGRHWVAEPGI 60
          M+S +NKRQKPKSPSCFFSIFSLFRSRD  +RRDE IDD RKVWPSD D+ R+WVAEPGI
Sbjct: 1  MASTNNKRQKPKSPSCFFSIFSLFRSRDSRKRRDETIDDMRKVWPSDEDRDRYWVAEPGI 60

Query: 61 DRKAKAYIEKIHTQIRSFETE 82
          DRKAKAYI+KIHTQIRS  TE
Sbjct: 61 DRKAKAYIDKIHTQIRSSGTE 81

[Close]

BLAST of Sed0018337 vs. NCBI nr
Match: KAA0056089.1 (hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ96428.1 hypothetical protein E5676_scaffold546G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 2  SSAHNKRQK-PKSPSCFFSIFSLFRSRDGGRRRDEA--IDDTRKVWPSDGDKGRHWVAEP 61
          SSA+NKRQK PKS SC FSIF LF+SRDGG+R D+A  +DDTRKVWPSDGDKGRHWVAEP
Sbjct: 3  SSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEP 62

Query: 62 GIDRKAKAYIEKIHTQIRSFETE 82
          GIDRKAKAYIEKIH QIRS E +
Sbjct: 63 GIDRKAKAYIEKIHHQIRSSEPQ 85

[Close]

BLAST of Sed0018337 vs. NCBI nr
Match: KAG6599163.1 (hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-21
Identity = 54/79 (68.35%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MSSAHNKRQKPKSPSCFFSIFSLFRSRDGGRRRDE---AIDDTRKVWPSDGDKGRHWVAE 60
          M+S++++R+KPKSPSC FSI +LF+SR   +R D+   A++DTRKVWPSD DKGRHWVAE
Sbjct: 1  MASSNDERRKPKSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWVAE 60

Query: 61 PGIDRKAKAYIEKIHTQIR 77
          PGIDRKAKAYI++IH QIR
Sbjct: 61 PGIDRKAKAYIDRIHYQIR 79

[Close]

BLAST of Sed0018337 vs. NCBI nr
Match: XP_021898970.1 (uncharacterized protein LOC110815469 [Carica papaya])

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 8  RQKPKSPSCFFSIFSLFRSRDGGRRRDE---AIDDTRKVWPSDGDKGRHWVAEPGIDRKA 67
          RQK  S S  FSIF LF+SR   RR  +    +DDTRKVWPSD DK R+WVAEPGIDRKA
Sbjct: 5  RQKKSSSS--FSIFGLFKSRRSHRRGGDDQTFVDDTRKVWPSDEDK-RNWVAEPGIDRKA 64

Query: 68 KAYIEKIH 73
           A+I K H
Sbjct: 65 SAFIAKFH 69

[Close]

BLAST of Sed0018337 vs. NCBI nr
Match: XP_010094905.1 (uncharacterized protein LOC21405464 [Morus notabilis] >EXB57548.1 hypothetical protein L484_022654 [Morus notabilis])

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-10
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 5  HNKRQKPKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDKGRHWVAEPGIDRKA 64
          +N   + K  S FFS+F   R+R   R  D A++D R+VWPSD D+GR WVAEPGIDRKA
Sbjct: 4  NNNSSRQKKGSSFFSLFRFKRNR---RVDDYAVEDMRRVWPSDEDRGR-WVAEPGIDRKA 63

Query: 65 KAYIEKIHTQIRS 78
          +A+I KIH  + +
Sbjct: 64 EAFIAKIHKNMNT 72

[Close]

BLAST of Sed0018337 vs. ExPASy TrEMBL
Match: A0A5D3BDY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00610 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.9e-28
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 2  SSAHNKRQK-PKSPSCFFSIFSLFRSRDGGRRRDEA--IDDTRKVWPSDGDKGRHWVAEP 61
          SSA+NKRQK PKS SC FSIF LF+SRDGG+R D+A  +DDTRKVWPSDGDKGRHWVAEP
Sbjct: 3  SSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEP 62

Query: 62 GIDRKAKAYIEKIHTQIRSFETE 82
          GIDRKAKAYIEKIH QIRS E +
Sbjct: 63 GIDRKAKAYIEKIHHQIRSSEPQ 85

[Close]

BLAST of Sed0018337 vs. ExPASy TrEMBL
Match: A0A0A0LJ24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-27
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 2  SSAHNKRQK-PKSPSCFFSIFSLFRSRDGGRRRDEA--IDDTRKVWPSDGDKGRHWVAEP 61
          SSA+NKRQK  KS SC FSIFSLF+SRDGG+R D+A  +DDTRKVWPSDGDKGRHWVAEP
Sbjct: 3  SSANNKRQKRQKSTSCCFSIFSLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEP 62

Query: 62 GIDRKAKAYIEKIHTQIRSFETE 82
          GIDRKAKAYIEKIH QIRS +T+
Sbjct: 63 GIDRKAKAYIEKIHHQIRSSQTQ 85

[Close]

BLAST of Sed0018337 vs. ExPASy TrEMBL
Match: W9R5Q4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022654 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-10
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 5  HNKRQKPKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDKGRHWVAEPGIDRKA 64
          +N   + K  S FFS+F   R+R   R  D A++D R+VWPSD D+GR WVAEPGIDRKA
Sbjct: 4  NNNSSRQKKGSSFFSLFRFKRNR---RVDDYAVEDMRRVWPSDEDRGR-WVAEPGIDRKA 63

Query: 65 KAYIEKIHTQIRS 78
          +A+I KIH  + +
Sbjct: 64 EAFIAKIHKNMNT 72

[Close]

BLAST of Sed0018337 vs. ExPASy TrEMBL
Match: A0A067E306 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040544mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.8e-10
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 4  AHNKRQKPKSPSCFFSIFSLFRSRDGGRRRDEAIDDT----RKVWPSDGDKGRHWVAEPG 63
          A NK++K       FS+ ++F+SR   RR ++  DD     RK+WPSD DKG +WVAEPG
Sbjct: 2  AGNKQKKSS-----FSLLNMFKSRRTNRRWEDPWDDVGSAPRKIWPSDEDKGAYWVAEPG 61

Query: 64 IDRKAKAYIEKIHTQIRSFETE 82
          IDRKA A+I K H + R  E+E
Sbjct: 62 IDRKASAFIAKFH-EARITESE 77

[Close]

BLAST of Sed0018337 vs. ExPASy TrEMBL
Match: V4SLM0 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.8e-10
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 4  AHNKRQKPKSPSCFFSIFSLFRSRDGGRRRDEAIDDT----RKVWPSDGDKGRHWVAEPG 63
          A NK++K       FS+ ++F+SR   RR ++  DD     RK+WPSD DKG +WVAEPG
Sbjct: 2  AGNKQKKSS-----FSLLNMFKSRRTNRRWEDPWDDVGSTPRKIWPSDEDKGAYWVAEPG 61

Query: 64 IDRKAKAYIEKIHTQIRSFETE 82
          IDRKA A+I K H + R  E+E
Sbjct: 62 IDRKASAFITKFH-EARISESE 77

[Close]

BLAST of Sed0018337 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 18 FSIFSLFRSRDGGR-RRDEAIDD---TRKVWPSDGDKGRHWVAEPGIDRKAKAYIEKIH 73
          FS+FS F++R   R   D + DD   TRK   SD DK R+WVAEPGIDRKA A+I K H
Sbjct: 13 FSLFSFFKTRRSHRVEADGSWDDFGYTRKAMASDEDK-RYWVAEPGIDRKASAFIAKFH 70

[Close]

BLAST of Sed0018337 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 2.0e-07
Identity = 27/42 (64.29%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 34 DEAIDD---TRKVWPSDGDKGRHWVAEPGIDRKAKAYIEKIH 73
          D + DD   TRK W SD DK R+WVAEPGIDRKA A+I K H
Sbjct: 14 DASWDDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFH 54

The following BLAST results are available for this feature:

BLAST of Sed0018337 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586063.1	1.3e-29	81.48	hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0056089.1	1.6e-27	80.72	hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ9642...	[more]
KAG6599163.1	1.3e-21	68.35	hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_021898970.1	1.8e-10	63.24	uncharacterized protein LOC110815469 [Carica papaya]	[more]
XP_010094905.1	4.1e-10	52.05	uncharacterized protein LOC21405464 [Morus notabilis] >EXB57548.1 hypothetical p...	[more]

BLAST of Sed0018337 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0018337 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BDY2	7.9e-28	80.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LJ24	1.0e-27	80.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1	[more]
W9R5Q4	2.0e-10	52.05	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022654 PE=4 SV=1	[more]
A0A067E306	9.8e-10	48.78	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040544mg PE=4 SV=1	[more]
V4SLM0	9.8e-10	48.78	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 ...	[more]

BLAST of Sed0018337 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	1.1e-08	55.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	2.0e-07	64.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 4..76
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 4..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018337.1	Sed0018337.1	mRNA