Sed0018253 (gene) Chayote v1

Overview


Name	Sed0018253
Type	gene
Organism	Sechium edule (Chayote v1)
Description	TCP family transcription factor
Location	LG03: 14186249 .. 14186883 (-)
RNA-Seq Expression	Sed0018253
Synteny	Sed0018253

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTATACATTCATTTCTTCGTCTTCCTCATCCTTCCAACCCTAAAAACCTTCTCCTCCGATCAAAACCCTAACCACAAAATCCCCAAATCAAATCGCAACATTTCAAAACCCAACCATGGGACCGGAGATCCTTCATCCTCCCAACGCCGCCCCTCGAAAATCCGCCGCCGCCTCATCGAAGGACCGCCACACCAAGGTCAACGGCAGAGGGCGGCGCCTCCGCATGCCGCCCCTCTGCGCCGCCCGGATCTTTCAGTTGACGCGCGAGCTTGGCCACCGCTCCGACGGCGAGACCATCCAGTGGCTTCTCCGTCAGGCCGAGCCATCCATCATCGCCGCCACCGGTACCGGCACCGTTCCCGCGGCTCCGATCTCCACTGTTTCTCCGGCCACGGCCTCGTCTTCTCCGTCGCAGCCGGTGGCGACCGTTGCGTTAGAGATGTTCACAATGCCGCCGCCGCCGAGCTGTCATTTGGATCTATCCCGGCCGGTCGGGATGGTGTACTCTGCCGGCGGGAGTGATTACCGGCACATGCCGTTTACTGCGTTGCTGTTGCAGCCGGCGACGGCGGAGGAGGAGAAGCAGGAAGAGGAGGTTTTCAGAGAGCAATAGTGAAATCAGTATGGAAATT

mRNA sequence

TTATTATACATTCATTTCTTCGTCTTCCTCATCCTTCCAACCCTAAAAACCTTCTCCTCCGATCAAAACCCTAACCACAAAATCCCCAAATCAAATCGCAACATTTCAAAACCCAACCATGGGACCGGAGATCCTTCATCCTCCCAACGCCGCCCCTCGAAAATCCGCCGCCGCCTCATCGAAGGACCGCCACACCAAGGTCAACGGCAGAGGGCGGCGCCTCCGCATGCCGCCCCTCTGCGCCGCCCGGATCTTTCAGTTGACGCGCGAGCTTGGCCACCGCTCCGACGGCGAGACCATCCAGTGGCTTCTCCGTCAGGCCGAGCCATCCATCATCGCCGCCACCGGTACCGGCACCGTTCCCGCGGCTCCGATCTCCACTGTTTCTCCGGCCACGGCCTCGTCTTCTCCGTCGCAGCCGGTGGCGACCGTTGCGTTAGAGATGTTCACAATGCCGCCGCCGCCGAGCTGTCATTTGGATCTATCCCGGCCGGTCGGGATGGTGTACTCTGCCGGCGGGAGTGATTACCGGCACATGCCGTTTACTGCGTTGCTGTTGCAGCCGGCGACGGCGGAGGAGGAGAAGCAGGAAGAGGAGGTTTTCAGAGAGCAATAGTGAAATCAGTATGGAAATT

Coding sequence (CDS)

ATGGGACCGGAGATCCTTCATCCTCCCAACGCCGCCCCTCGAAAATCCGCCGCCGCCTCATCGAAGGACCGCCACACCAAGGTCAACGGCAGAGGGCGGCGCCTCCGCATGCCGCCCCTCTGCGCCGCCCGGATCTTTCAGTTGACGCGCGAGCTTGGCCACCGCTCCGACGGCGAGACCATCCAGTGGCTTCTCCGTCAGGCCGAGCCATCCATCATCGCCGCCACCGGTACCGGCACCGTTCCCGCGGCTCCGATCTCCACTGTTTCTCCGGCCACGGCCTCGTCTTCTCCGTCGCAGCCGGTGGCGACCGTTGCGTTAGAGATGTTCACAATGCCGCCGCCGCCGAGCTGTCATTTGGATCTATCCCGGCCGGTCGGGATGGTGTACTCTGCCGGCGGGAGTGATTACCGGCACATGCCGTTTACTGCGTTGCTGTTGCAGCCGGCGACGGCGGAGGAGGAGAAGCAGGAAGAGGAGGTTTTCAGAGAGCAATAG

Protein sequence

MGPEILHPPNAAPRKSAAASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPSQPVATVALEMFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAEEEKQEEEVFREQ

Homology

[Close]

BLAST of Sed0018253 vs. NCBI nr
Match: XP_023543697.1 (transcription factor TCP11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.5 bits (563), Expect = 5.5e-54
Identity = 126/169 (74.56%), Postives = 138/169 (81.66%), Query Frame = 0


Query: 10  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWL 69
           +  PRKS A     +SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WL
Sbjct: 41  SVVPRKSTASLSSSSSSRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWL 100

Query: 70  LRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPVATVALE--MFTMPPPPS 129
           LRQAEPSIIAATGTGTVPAAPIST+SPA ASS PS     Q V   A E  MF M PPPS
Sbjct: 101 LRQAEPSIIAATGTGTVPAAPISTISPAMASSGPSVSCRVQSVGVAADEQGMFAM-PPPS 160

Query: 130 CHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE 165
           C LDL +PVG+ YSA G+DYRHMPFTALLLQP+TA+  EE+QEEEVFRE
Sbjct: 161 CRLDLCQPVGLDYSAAGNDYRHMPFTALLLQPSTADEAEERQEEEVFRE 208

[Close]

BLAST of Sed0018253 vs. NCBI nr
Match: XP_022143970.1 (transcription factor TCP11 [Momordica charantia])

HSP 1 Score: 218.8 bits (556), Expect = 3.5e-53
Identity = 124/167 (74.25%), Postives = 138/167 (82.63%), Query Frame = 0


Query: 13  PRKSAAA-----SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQ 72
           PRKS +A     SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WLLRQ
Sbjct: 38  PRKSTSATALSSSSRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQ 97

Query: 73  AEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPVATVALE-MFTMP-PPPSCHL 132
           AEPSIIAATGTGTVPAAPIST S A ASS+PS     QPV     + MF MP PPPSC L
Sbjct: 98  AEPSIIAATGTGTVPAAPISTASQAIASSAPSVSCRVQPVPVGGGQGMFVMPQPPPSCRL 157

Query: 133 DLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFREQ 166
           DL +P+GM Y+A G+DYRHMPFTALLLQP+TA+  EE+QEEEVFR+Q
Sbjct: 158 DLCQPLGMEYAAAGNDYRHMPFTALLLQPSTADEAEERQEEEVFRDQ 204

[Close]

BLAST of Sed0018253 vs. NCBI nr
Match: KAG6604408.1 (Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.8 bits (556), Expect = 3.5e-53
Identity = 125/169 (73.96%), Postives = 138/169 (81.66%), Query Frame = 0


Query: 10  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWL 69
           +  PRKS A     +SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WL
Sbjct: 41  SVVPRKSTASLSSSSSSRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWL 100

Query: 70  LRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPVATVALE--MFTMPPPPS 129
           LRQAEPSIIAATGTGTVPAAPIST+SPA ASS+PS     Q V   A E  MF M P PS
Sbjct: 101 LRQAEPSIIAATGTGTVPAAPISTISPAMASSAPSVSCRVQSVGVAADEQGMFAM-PTPS 160

Query: 130 CHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE 165
           C LDL +PVG+ YSA G+DYRHMPFTALLLQP+TA+  EE+QEEEVFRE
Sbjct: 161 CRLDLCQPVGLDYSAAGNDYRHMPFTALLLQPSTADEAEERQEEEVFRE 208

[Close]

BLAST of Sed0018253 vs. NCBI nr
Match: XP_022926085.1 (transcription factor TCP11-like [Cucurbita moschata] >KAG7034559.1 Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.0 bits (554), Expect = 6.1e-53
Identity = 125/169 (73.96%), Postives = 138/169 (81.66%), Query Frame = 0


Query: 10  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWL 69
           +  PRKS A     +SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WL
Sbjct: 41  SVVPRKSTASLSSSSSSRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWL 100

Query: 70  LRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPVATVALE--MFTMPPPPS 129
           LRQAEPSIIAATGTGTVPAAPIST+SPA ASS+ S     Q V   A E  MF M PPPS
Sbjct: 101 LRQAEPSIIAATGTGTVPAAPISTISPAMASSALSVSCRVQSVGVAADEQGMFAM-PPPS 160

Query: 130 CHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE 165
           C LDL +PVG+ YSA G+DYRHMPFTALLLQP+TA+  EE+QEEEVFRE
Sbjct: 161 CRLDLCQPVGLDYSAAGNDYRHMPFTALLLQPSTADEAEERQEEEVFRE 208

[Close]

BLAST of Sed0018253 vs. NCBI nr
Match: XP_038882900.1 (transcription factor TCP11 [Benincasa hispida])

HSP 1 Score: 217.6 bits (553), Expect = 7.9e-53
Identity = 126/167 (75.45%), Postives = 136/167 (81.44%), Query Frame = 0


Query: 8   PPNAAPRKSAAA-SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLR 67
           P    PRKS  + SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WLLR
Sbjct: 38  PQAVVPRKSTTSLSSRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLR 97

Query: 68  QAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QP--VATVALEMFTMPPPPSCH 127
           QAEPSIIAATGTGTVPAAPIST+SPA ASS+ S     QP  V      MF M PPPSC 
Sbjct: 98  QAEPSIIAATGTGTVPAAPISTLSPAMASSARSISCRVQPLTVGGGGQGMFAM-PPPSCR 157

Query: 128 LDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE 165
           LDL +PVGM YSA G+DYRHMPFTALLLQP+TAE  EE+QEEEVFRE
Sbjct: 158 LDLCQPVGMEYSAVGNDYRHMPFTALLLQPSTAEEAEERQEEEVFRE 203

[Close]

BLAST of Sed0018253 vs. ExPASy Swiss-Prot
Match: Q9SJK7 (Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.0e-31
Identity = 80/148 (54.05%), Postives = 94/148 (63.51%), Query Frame = 0


Query: 18  AASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATG 77
           +A +KDRHTKVNGR RR+ MP L AARIFQLTRELGH+++GETI+WLL QAEPSIIAATG
Sbjct: 40  SARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATG 99

Query: 78  TGTVPAAPISTVSPATASSSPSQPVATVALEMFTMPPPPSCHLDLSRPVGMVYSAGGSDY 137
            GT     IS      A  S S    T        P  PSC LDL +P+G+ Y   G  Y
Sbjct: 100 YGT---KLISNWVDVAADDSSSSSSMTSPQTQTQTPQSPSCRLDLCQPIGIQYPVNG--Y 159

Query: 138 RHMPFTALLLQPATAEEEKQEEEVFREQ 166
            HMPFTA+LL+P T   E + E    E+
Sbjct: 160 SHMPFTAMLLEPMTTTAESEVEIAEEEE 182

[Close]

BLAST of Sed0018253 vs. ExPASy Swiss-Prot
Match: Q9C9L2 (Transcription factor TCP15 OS=Arabidopsis thaliana OX=3702 GN=TCP15 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.8e-26
Identity = 56/77 (72.73%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 9   PNAAPRK--SAAASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLR 68
           PN+ P+K      S+KDRHTKV GRGRR+RMP +CAAR+FQLTRELGH+SDGETI+WLL+
Sbjct: 38  PNSEPKKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQ 97

Query: 69  QAEPSIIAATGTGTVPA 84
           QAEP++IAATGTGT+PA
Sbjct: 98  QAEPAVIAATGTGTIPA 114

[Close]

BLAST of Sed0018253 vs. ExPASy Swiss-Prot
Match: Q9LSD5 (Transcription factor TCP20 OS=Arabidopsis thaliana OX=3702 GN=TCP20 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.6e-26
Identity = 59/77 (76.62%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 19  ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGT 78
           +S+KDRHTKV GRGRR+RMP LCAARIFQLTRELGH+SDGETIQWLL+QAEPSIIAATG+
Sbjct: 76  SSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGS 135

Query: 79  GTVPAAPISTVSPATAS 96
           GT+PA+ +++ S AT++
Sbjct: 136 GTIPASALAS-SAATSN 151

[Close]

BLAST of Sed0018253 vs. ExPASy Swiss-Prot
Match: Q93Z00 (Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-25
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 19  ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGT 78
           AS+KDRHTKV+GRGRR+RMP LCAAR+FQLTRELGH+SDGETI+WLL+QAEPS+IAATGT
Sbjct: 115 ASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGT 174

Query: 79  GTVPAAPIS-TVSPATASSSPSQP 102
           GT+PA   S  +S  ++ SS S P
Sbjct: 175 GTIPANFTSLNISLRSSGSSMSLP 198

[Close]

BLAST of Sed0018253 vs. ExPASy Swiss-Prot
Match: O64647 (Transcription factor TCP9 OS=Arabidopsis thaliana OX=3702 GN=TCP9 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-25
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 6   LHPPNAAPRKSAAASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLL 65
           L PP++       AS+KDRHTKV GRGRR+RMP  CAARIFQLTRELGH+SDGETI+WLL
Sbjct: 60  LAPPSSTGPPLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLL 119

Query: 66  RQAEPSIIAATGTGTVPAAPIS 88
             AEP+IIAATGTGTVPA  +S
Sbjct: 120 ENAEPAIIAATGTGTVPAIAMS 141

[Close]

BLAST of Sed0018253 vs. ExPASy TrEMBL
Match: A0A6J1CQB6 (transcription factor TCP11 OS=Momordica charantia OX=3673 GN=LOC111013755 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.7e-53
Identity = 124/167 (74.25%), Postives = 138/167 (82.63%), Query Frame = 0


Query: 13  PRKSAAA-----SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQ 72
           PRKS +A     SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WLLRQ
Sbjct: 38  PRKSTSATALSSSSRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQ 97

Query: 73  AEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPVATVALE-MFTMP-PPPSCHL 132
           AEPSIIAATGTGTVPAAPIST S A ASS+PS     QPV     + MF MP PPPSC L
Sbjct: 98  AEPSIIAATGTGTVPAAPISTASQAIASSAPSVSCRVQPVPVGGGQGMFVMPQPPPSCRL 157

Query: 133 DLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFREQ 166
           DL +P+GM Y+A G+DYRHMPFTALLLQP+TA+  EE+QEEEVFR+Q
Sbjct: 158 DLCQPLGMEYAAAGNDYRHMPFTALLLQPSTADEAEERQEEEVFRDQ 204

[Close]

BLAST of Sed0018253 vs. ExPASy TrEMBL
Match: A0A6J1EK07 (transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.9e-53
Identity = 125/169 (73.96%), Postives = 138/169 (81.66%), Query Frame = 0


Query: 10  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWL 69
           +  PRKS A     +SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WL
Sbjct: 41  SVVPRKSTASLSSSSSSRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWL 100

Query: 70  LRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPVATVALE--MFTMPPPPS 129
           LRQAEPSIIAATGTGTVPAAPIST+SPA ASS+ S     Q V   A E  MF M PPPS
Sbjct: 101 LRQAEPSIIAATGTGTVPAAPISTISPAMASSALSVSCRVQSVGVAADEQGMFAM-PPPS 160

Query: 130 CHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE 165
           C LDL +PVG+ YSA G+DYRHMPFTALLLQP+TA+  EE+QEEEVFRE
Sbjct: 161 CRLDLCQPVGLDYSAAGNDYRHMPFTALLLQPSTADEAEERQEEEVFRE 208

[Close]

BLAST of Sed0018253 vs. ExPASy TrEMBL
Match: A0A6J1IAL2 (transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111471177 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 7.2e-52
Identity = 124/167 (74.25%), Postives = 134/167 (80.24%), Query Frame = 0


Query: 14  RKSAAA----SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAE 73
           RKS+ A    SS+DRHTKVNGRGRR+RMP LCAARIFQLT ELGHRSDGETI+WLLRQAE
Sbjct: 44  RKSSTALSSSSSRDRHTKVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAE 103

Query: 74  PSIIAATGTGTVPAAPISTVSPATASSSPS-----QPVATVALE---MFTMPPPPSCHLD 133
           PSIIAATGTGTVPAAPISTVSP  ASS+PS     QPVA  A     MF M PPPSC L+
Sbjct: 104 PSIIAATGTGTVPAAPISTVSPVMASSAPSVACRVQPVAVAAASGQGMFGM-PPPSCRLN 163

Query: 134 LSRPVGMVYSAGGSDYRHMPFTALLLQPAT---AEEEKQEEEVFREQ 166
           L +PVGM YSAGG DYR+MPFTALLLQPAT   AEE  + EE+FREQ
Sbjct: 164 LCQPVGMDYSAGGDDYRYMPFTALLLQPATADEAEERHEAEEIFREQ 209

[Close]

BLAST of Sed0018253 vs. ExPASy TrEMBL
Match: A0A6J1IR93 (transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111478656 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.2e-51
Identity = 122/169 (72.19%), Postives = 136/169 (80.47%), Query Frame = 0


Query: 10  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWL 69
           +  PRKS A     +SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WL
Sbjct: 41  SVVPRKSTASLSSSSSSRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWL 100

Query: 70  LRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPVATVALE--MFTMPPPPS 129
           LRQAEPSIIAATGTGTVPAAPIST++PA ASS+PS     Q V   A E  MF M   PS
Sbjct: 101 LRQAEPSIIAATGTGTVPAAPISTITPAMASSAPSVSCRVQSVGVAADEQGMFAM---PS 160

Query: 130 CHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE 165
           C LDL +PVG+ YSA G+DYRHMPFTALLLQP+TA+  EE+QE EVFRE
Sbjct: 161 CRLDLCQPVGLDYSAAGNDYRHMPFTALLLQPSTADEAEERQEGEVFRE 206

[Close]

BLAST of Sed0018253 vs. ExPASy TrEMBL
Match: A0A6J1HDU7 (transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111463270 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.2e-51
Identity = 123/168 (73.21%), Postives = 134/168 (79.76%), Query Frame = 0


Query: 14  RKSAAA----SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAE 73
           RKS+ A    SS+DRHTKVNGRGRR+RMP LCAARIFQLT ELGHRSDGETI+WLLRQAE
Sbjct: 44  RKSSTALSSSSSRDRHTKVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAE 103

Query: 74  PSIIAATGTGTVPAAPISTVSPATASSSPS-----QPVATVAL----EMFTMPPPPSCHL 133
           PSIIAATGTGT+PAAPISTVSP  ASS+PS     QPVA  A      MF M PPPSC L
Sbjct: 104 PSIIAATGTGTIPAAPISTVSPVMASSAPSVACRVQPVAVAAAAGGQRMFGM-PPPSCRL 163

Query: 134 DLSRPVGMVYSAGGSDYRHMPFTALLLQPAT---AEEEKQEEEVFREQ 166
           +L +PVGM YSAGG DYR+MPFTALLLQPAT   AEE  + EE+FREQ
Sbjct: 164 NLCQPVGMNYSAGGDDYRYMPFTALLLQPATADEAEERHEAEEIFREQ 210

[Close]

BLAST of Sed0018253 vs. TAIR 10
Match: AT2G37000.1 (TCP family transcription factor )

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-32
Identity = 80/148 (54.05%), Postives = 94/148 (63.51%), Query Frame = 0


Query: 18  AASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATG 77
           +A +KDRHTKVNGR RR+ MP L AARIFQLTRELGH+++GETI+WLL QAEPSIIAATG
Sbjct: 40  SARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATG 99

Query: 78  TGTVPAAPISTVSPATASSSPSQPVATVALEMFTMPPPPSCHLDLSRPVGMVYSAGGSDY 137
            GT     IS      A  S S    T        P  PSC LDL +P+G+ Y   G  Y
Sbjct: 100 YGT---KLISNWVDVAADDSSSSSSMTSPQTQTQTPQSPSCRLDLCQPIGIQYPVNG--Y 159

Query: 138 RHMPFTALLLQPATAEEEKQEEEVFREQ 166
            HMPFTA+LL+P T   E + E    E+
Sbjct: 160 SHMPFTAMLLEPMTTTAESEVEIAEEEE 182

[Close]

BLAST of Sed0018253 vs. TAIR 10
Match: AT1G69690.1 (TCP family transcription factor )

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-27
Identity = 56/77 (72.73%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 9   PNAAPRK--SAAASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLR 68
           PN+ P+K      S+KDRHTKV GRGRR+RMP +CAAR+FQLTRELGH+SDGETI+WLL+
Sbjct: 38  PNSEPKKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQ 97

Query: 69  QAEPSIIAATGTGTVPA 84
           QAEP++IAATGTGT+PA
Sbjct: 98  QAEPAVIAATGTGTIPA 114

[Close]

BLAST of Sed0018253 vs. TAIR 10
Match: AT3G27010.1 (TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 )

HSP 1 Score: 118.6 bits (296), Expect = 4.7e-27
Identity = 59/77 (76.62%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 19  ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGT 78
           +S+KDRHTKV GRGRR+RMP LCAARIFQLTRELGH+SDGETIQWLL+QAEPSIIAATG+
Sbjct: 76  SSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGS 135

Query: 79  GTVPAAPISTVSPATAS 96
           GT+PA+ +++ S AT++
Sbjct: 136 GTIPASALAS-SAATSN 151

[Close]

BLAST of Sed0018253 vs. TAIR 10
Match: AT2G45680.1 (TCP family transcription factor )

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-26
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 6   LHPPNAAPRKSAAASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLL 65
           L PP++       AS+KDRHTKV GRGRR+RMP  CAARIFQLTRELGH+SDGETI+WLL
Sbjct: 60  LAPPSSTGPPLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLL 119

Query: 66  RQAEPSIIAATGTGTVPAAPIS 88
             AEP+IIAATGTGTVPA  +S
Sbjct: 120 ENAEPAIIAATGTGTVPAIAMS 141

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BLAST of Sed0018253 vs. TAIR 10
Match: AT3G47620.1 (TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 )

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-26
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 19  ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGT 78
           AS+KDRHTKV+GRGRR+RMP LCAAR+FQLTRELGH+SDGETI+WLL+QAEPS+IAATGT
Sbjct: 115 ASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGT 174

Query: 79  GTVPAAPIS-TVSPATASSSPSQP 102
           GT+PA   S  +S  ++ SS S P
Sbjct: 175 GTIPANFTSLNISLRSSGSSMSLP 198

The following BLAST results are available for this feature:

BLAST of Sed0018253 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543697.1	5.5e-54	74.56	transcription factor TCP11-like [Cucurbita pepo subsp. pepo]	[more]
XP_022143970.1	3.5e-53	74.25	transcription factor TCP11 [Momordica charantia]	[more]
KAG6604408.1	3.5e-53	73.96	Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022926085.1	6.1e-53	73.96	transcription factor TCP11-like [Cucurbita moschata] >KAG7034559.1 Transcription...	[more]
XP_038882900.1	7.9e-53	75.45	transcription factor TCP11 [Benincasa hispida]	[more]

BLAST of Sed0018253 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJK7	3.0e-31	54.05	Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1	[more]
Q9C9L2	3.8e-26	72.73	Transcription factor TCP15 OS=Arabidopsis thaliana OX=3702 GN=TCP15 PE=1 SV=1	[more]
Q9LSD5	6.6e-26	76.62	Transcription factor TCP20 OS=Arabidopsis thaliana OX=3702 GN=TCP20 PE=1 SV=1	[more]
Q93Z00	1.5e-25	72.62	Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1	[more]
O64647	1.5e-25	71.95	Transcription factor TCP9 OS=Arabidopsis thaliana OX=3702 GN=TCP9 PE=1 SV=1	[more]

BLAST of Sed0018253 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQB6	1.7e-53	74.25	transcription factor TCP11 OS=Momordica charantia OX=3673 GN=LOC111013755 PE=4 S...	[more]
A0A6J1EK07	2.9e-53	73.96	transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE...	[more]
A0A6J1IAL2	7.2e-52	74.25	transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111471177 PE=4...	[more]
A0A6J1IR93	1.2e-51	72.19	transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111478656 PE=4...	[more]
A0A6J1HDU7	1.2e-51	73.21	transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111463270 PE...	[more]

BLAST of Sed0018253 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37000.1	2.2e-32	54.05	TCP family transcription factor	[more]
AT1G69690.1	2.7e-27	72.73	TCP family transcription factor	[more]
AT3G27010.1	4.7e-27	76.62	TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20	[more]
AT2G45680.1	1.0e-26	71.95	TCP family transcription factor	[more]
AT3G47620.1	1.0e-26	72.62	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 20..97 e-value: 4.0E-28 score: 98.9
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 21..75 score: 26.196125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR31072:SF4	TRANSCRIPTION FACTOR TCP16-RELATED	coord: 11..99
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 11..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018253.1	Sed0018253.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding