Sed0018191 (gene) Chayote v1

Overview
NameSed0018191
Typegene
OrganismSechium edule (Chayote v1)
DescriptionLOB domain-containing protein
LocationLG01: 21710980 .. 21711980 (-)
RNA-Seq ExpressionSed0018191
SyntenySed0018191
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTATTAACTTTTACTACCCATTCAAATTCGTCAATCACTCTCTCTTTCTCTTTTCTCCATTGCTATTTCTTCAATCTAAAGTAACCTCTGTTCTTCATTATTTCAAACCGATCAAAACAGAGCGCTTTGAAATTTGGGGATTTTGTGTTTGTTTGTAAACCTCACAATCGGAGAAAATGAGTTGCAATGGTTGCAGGGTTCTTCGAAAGGGTTGCAGCGAAGACTGTGTATTAAGGTCAAGTCTCCAATGGATTCACTCCCCGGAAGCTCAAGGCAACGCCACTTTATTTCTCGCTAAGTTCTTCGGCCGGAGTGATCTCTTGTCCTTCCTCTCCTCCGTTCCTAATCATCAAAGACATGGTACCCATTTGGTTTTAATCGGTTTTTTGTAATACCCACTTTCGATTTTGATTCTGTAATAAACTCTGAGATTACTCTGTTTTCTTTTTTGTTTTTTTTGGAAGCTCTGTTTCAGTCTCTGTTATTTGAAGCCTGTGGCCGCACGGTGAACCCGGTGAGCGGCGCCGTTGGGCTGTTGTCGAGTGGGAACTGGCACGCGTGTCGGGCGGCGGCGGAGACGGTTCTCAGCGGCGGAGTTCTCTGGCCGATTCCCGGAATTCAAATTTCTGGGAATCTCTCTGTTAACGTCGAGGATGCTTCTCTTAGTTTCAATAATGATGTTTGGACCCATCAGAATCTTCCGGCCGATCACGGAAGAGGGAAGGAACAGCCGTTGGAGAATCAGCGGTCGTTTGATTCAGAGGAATCGGTGATGACGAGCTTTGGAAGCGGCGATCATGGCGTCGGCGACCGGAAGCTTTTGAACTTGTTCATCTGAAAAACAAATAAGAAAACAGAGTTATATATGTTGGAATTTTGGTTTTTGAGTTTAGTATTGGAAATGGCGACGTAGAAGTACCGAAAGTGAATAATCCAATGAGATTTGATAAATAGTTCGTCGGAACAGAACTTTCACAGTCTATTTTCTTTCGCCGGCG

mRNA sequence

TTATTATTAACTTTTACTACCCATTCAAATTCGTCAATCACTCTCTCTTTCTCTTTTCTCCATTGCTATTTCTTCAATCTAAAGTAACCTCTGTTCTTCATTATTTCAAACCGATCAAAACAGAGCGCTTTGAAATTTGGGGATTTTGTGTTTGTTTGTAAACCTCACAATCGGAGAAAATGAGTTGCAATGGTTGCAGGGTTCTTCGAAAGGGTTGCAGCGAAGACTGTGTATTAAGGTCAAGTCTCCAATGGATTCACTCCCCGGAAGCTCAAGGCAACGCCACTTTATTTCTCGCTAAGTTCTTCGGCCGGAGTGATCTCTTGTCCTTCCTCTCCTCCGTTCCTAATCATCAAAGACATGCTCTGTTTCAGTCTCTGTTATTTGAAGCCTGTGGCCGCACGGTGAACCCGGTGAGCGGCGCCGTTGGGCTGTTGTCGAGTGGGAACTGGCACGCGTGTCGGGCGGCGGCGGAGACGGTTCTCAGCGGCGGAGTTCTCTGGCCGATTCCCGGAATTCAAATTTCTGGGAATCTCTCTGTTAACGTCGAGGATGCTTCTCTTAGTTTCAATAATGATGTTTGGACCCATCAGAATCTTCCGGCCGATCACGGAAGAGGGAAGGAACAGCCGTTGGAGAATCAGCGGTCGTTTGATTCAGAGGAATCGGTGATGACGAGCTTTGGAAGCGGCGATCATGGCGTCGGCGACCGGAAGCTTTTGAACTTGTTCATCTGAAAAACAAATAAGAAAACAGAGTTATATATGTTGGAATTTTGGTTTTTGAGTTTAGTATTGGAAATGGCGACGTAGAAGTACCGAAAGTGAATAATCCAATGAGATTTGATAAATAGTTCGTCGGAACAGAACTTTCACAGTCTATTTTCTTTCGCCGGCG

Coding sequence (CDS)

ATGAGTTGCAATGGTTGCAGGGTTCTTCGAAAGGGTTGCAGCGAAGACTGTGTATTAAGGTCAAGTCTCCAATGGATTCACTCCCCGGAAGCTCAAGGCAACGCCACTTTATTTCTCGCTAAGTTCTTCGGCCGGAGTGATCTCTTGTCCTTCCTCTCCTCCGTTCCTAATCATCAAAGACATGCTCTGTTTCAGTCTCTGTTATTTGAAGCCTGTGGCCGCACGGTGAACCCGGTGAGCGGCGCCGTTGGGCTGTTGTCGAGTGGGAACTGGCACGCGTGTCGGGCGGCGGCGGAGACGGTTCTCAGCGGCGGAGTTCTCTGGCCGATTCCCGGAATTCAAATTTCTGGGAATCTCTCTGTTAACGTCGAGGATGCTTCTCTTAGTTTCAATAATGATGTTTGGACCCATCAGAATCTTCCGGCCGATCACGGAAGAGGGAAGGAACAGCCGTTGGAGAATCAGCGGTCGTTTGATTCAGAGGAATCGGTGATGACGAGCTTTGGAAGCGGCGATCATGGCGTCGGCGACCGGAAGCTTTTGAACTTGTTCATCTGA

Protein sequence

MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQRHALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLSVNVEDASLSFNNDVWTHQNLPADHGRGKEQPLENQRSFDSEESVMTSFGSGDHGVGDRKLLNLFI
Homology
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BLAST of Sed0018191 vs. NCBI nr
Match: XP_038899091.1 (LOB domain-containing protein 39-like [Benincasa hispida])

HSP 1 Score: 285.8 bits (730), Expect = 2.7e-73
Identity = 148/205 (72.20%), Postives = 165/205 (80.49%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE CVLR SL WI SPEAQGNATLFLAKFFGRSDLLSF+S+VP HQR
Sbjct: 1   MSCNGCRVLRKGCSETCVLRGSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLS 120
            ALFQSLLFEACGRTVNPVSGAVGLLSSGNWH C+AAA+TVL+GGVL PIPG +ISGNL+
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTVLNGGVLRPIPGFEISGNLT 120

Query: 121 VNVEDASLSFNNDVWT--------HQNLPADH--------GRGKEQPLENQRSFDSEESV 180
            N++++ L+FN DVWT        + + P+D         GRGK  PLEN+RS DSEESV
Sbjct: 121 PNLDESLLTFNTDVWTTTTHNLQFYPSTPSDFRCLPDLSLGRGKNHPLENRRSLDSEESV 180

Query: 181 MTSFGSGDHGVGDR----KLLNLFI 186
           MTSFGSGD  VGDR    KLLNLF+
Sbjct: 181 MTSFGSGD--VGDRRKETKLLNLFV 203

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BLAST of Sed0018191 vs. NCBI nr
Match: XP_008452637.1 (PREDICTED: LOB domain-containing protein 39-like [Cucumis melo] >KAA0064436.1 LOB domain-containing protein 39-like [Cucumis melo var. makuwa])

HSP 1 Score: 282.3 bits (721), Expect = 2.9e-72
Identity = 145/203 (71.43%), Postives = 164/203 (80.79%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE CVLRSSL WI SPEAQGNATLFLAKFFGRSDLLSF+S+VP HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLS 120
            ALFQSLLFEACGRTVNPVSGAVGLLSSGNWH C+AAA+T+L+GGVL PIPGI+ISGN +
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTILNGGVLRPIPGIEISGNPT 120

Query: 121 VNVEDASLSFNNDVWT--------HQNLPADH--------GRGKEQPLENQRSFDSEESV 180
            N++D+S +FNNDVWT        + + P+D          R K+ PLEN+RS DSEESV
Sbjct: 121 PNLDDSSFTFNNDVWTTTTHNLQFYPSTPSDFRCLPDLGLNRTKKHPLENRRSLDSEESV 180

Query: 181 MTSFGSGDHGV--GDRKLLNLFI 186
           MTSFGSGD G    + KLLNLF+
Sbjct: 181 MTSFGSGDLGEQRKETKLLNLFV 203

[Close]
BLAST of Sed0018191 vs. NCBI nr
Match: XP_022137491.1 (LOB domain-containing protein 39-like [Momordica charantia])

HSP 1 Score: 282.0 bits (720), Expect = 3.8e-72
Identity = 147/203 (72.41%), Postives = 163/203 (80.30%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE CVLRS L WI SPE+QGNATLFLAKFFGRSDLLSF+S+VP+HQR
Sbjct: 1   MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQR 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLS 120
            ALFQSLLFEACGRTVNPVSGAVGLLSSGNWH C+AAAETVL GGVL PIPGI +SGN +
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLGGGVLRPIPGIDVSGNST 120

Query: 121 VNVEDASLSFNNDVWTHQNLP------------ADHGRGKEQ--PLENQRSFDSEESVMT 180
            +V+++S+SF+ DVWT QNL             +D G GK     +EN+RS DSEESVMT
Sbjct: 121 GHVDESSVSFSTDVWTTQNLQFYPSVPSGYRRLSDLGGGKNHYPQMENRRSLDSEESVMT 180

Query: 181 SFGSGDHGVGD----RKLLNLFI 186
           SFGSGD G GD    RKLLNLFI
Sbjct: 181 SFGSGDLGDGDRRKERKLLNLFI 203

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BLAST of Sed0018191 vs. NCBI nr
Match: KAG7024296.1 (LOB domain-containing protein 38, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.2 bits (705), Expect = 2.1e-70
Identity = 145/203 (71.43%), Postives = 162/203 (79.80%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSC+GCRVLRKGC+E CVLRSSL WIHSPEAQ NATLFLAKFFGRSDLLSF+++VP+HQR
Sbjct: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLS 120
            ALFQSLLFEACGRTVNPVSGAVGLLSSGNWH C+ AAETVLSGGVL PIPGI++SGN +
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120

Query: 121 VNVEDASLSFNNDVW--THQNL------PADH----------GRGKEQPLENQRSFDSEE 180
            NV+D+SL+ N DVW  T QNL      P+D           GR K   LEN+RS DSE+
Sbjct: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED 180

Query: 181 SVMTSFGSGDHGVGDRKLLNLFI 186
           S+MTSFGSGD     RKLLNLFI
Sbjct: 181 SIMTSFGSGDRR-KQRKLLNLFI 202

[Close]
BLAST of Sed0018191 vs. NCBI nr
Match: XP_004141401.1 (LOB domain-containing protein 39 [Cucumis sativus] >KGN55262.1 hypothetical protein Csa_012579 [Cucumis sativus])

HSP 1 Score: 275.4 bits (703), Expect = 3.6e-70
Identity = 144/205 (70.24%), Postives = 163/205 (79.51%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE CVLRSSL WI SPEAQGNATLFLAKFFGRSDLLSF+S+VP HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLS 120
            ALFQSLLFEACGRTVNPVSGAVGLLS+GNWH C+AAA+T+L+GGVL PIPGI+IS N +
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120

Query: 121 VNVEDASLSFNNDVWT---------HQNLPADH--------GRGK-EQPLENQRSFDSEE 180
            N++D+SL+FN DVWT         + + P+D         GR K   PLEN+RS DSEE
Sbjct: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEE 180

Query: 181 SVMTSFGSGDHG--VGDRKLLNLFI 186
           SVMTSFGSGD G    + KLLNLF+
Sbjct: 181 SVMTSFGSGDLGDQRKETKLLNLFV 205

[Close]
BLAST of Sed0018191 vs. ExPASy Swiss-Prot
Match: Q9SZE8 (LOB domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=LBD39 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.9e-45
Identity = 88/138 (63.77%), Postives = 110/138 (79.71%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE C+LR  LQWI S E+QG+AT+F+AKFFGR+ L+SF+SSVP  QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLS 120
            ALFQSLLFEACGRTVNPV+GAVG+L + NWH C+AA ETVL GG L PI  +  S +L 
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLESPSLM 120

Query: 121 VNVEDASLSFNNDVWTHQ 139
           ++ +++S  ++ DV  +Q
Sbjct: 121 ISCDESSEIWHQDVSRNQ 138

[Close]
BLAST of Sed0018191 vs. ExPASy Swiss-Prot
Match: Q9SN23 (LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.0e-44
Identity = 83/120 (69.17%), Postives = 100/120 (83.33%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE+C+LR  +QWI SPEAQG+AT+F+AKFFGR+ L+SF+S+VP  Q 
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLS 120
            ALFQSLL+EACGRTVNPV+GAVGLL +GNW+ C+AA ETVL GG L PIP +   G  +
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFA 120

[Close]
BLAST of Sed0018191 vs. ExPASy Swiss-Prot
Match: Q9FN11 (LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 8.6e-43
Identity = 79/117 (67.52%), Postives = 100/117 (85.47%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE+C+LR  +QWI + +AQG+AT+F+AKFFGR+ L+SF+S+VP+ QR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISG 118
            ALFQSLL+EACGRTVNPV+GA+G+L +GNW+ C+AA ETVL GG L PIP +   G
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHG 117

[Close]
BLAST of Sed0018191 vs. ExPASy Swiss-Prot
Match: Q9ZW96 (LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.2e-37
Identity = 70/110 (63.64%), Postives = 89/110 (80.91%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE+C +R  LQWI S E+Q NAT+FLAKF+GR+ L++ L++ P+H R
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPI 111
            A+F+SLL+EACGR VNP+ G+VGLL SGNWH C+AA E V+ G  + PI
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPI 112

[Close]
BLAST of Sed0018191 vs. ExPASy Swiss-Prot
Match: Q9M886 (LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.0e-35
Identity = 67/104 (64.42%), Postives = 82/104 (78.85%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSEDC +R  L WI SPEAQ NAT+FLAKF+GR+ L++ +++ PNH R
Sbjct: 3   MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSG 105
             +F+SLL EACGR VNP+ G+VGLL SGNW  C+ A E V+ G
Sbjct: 63  PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106

[Close]
BLAST of Sed0018191 vs. ExPASy TrEMBL
Match: A0A5A7VDI5 (LOB domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001480 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.4e-72
Identity = 145/203 (71.43%), Postives = 164/203 (80.79%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE CVLRSSL WI SPEAQGNATLFLAKFFGRSDLLSF+S+VP HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLS 120
            ALFQSLLFEACGRTVNPVSGAVGLLSSGNWH C+AAA+T+L+GGVL PIPGI+ISGN +
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTILNGGVLRPIPGIEISGNPT 120

Query: 121 VNVEDASLSFNNDVWT--------HQNLPADH--------GRGKEQPLENQRSFDSEESV 180
            N++D+S +FNNDVWT        + + P+D          R K+ PLEN+RS DSEESV
Sbjct: 121 PNLDDSSFTFNNDVWTTTTHNLQFYPSTPSDFRCLPDLGLNRTKKHPLENRRSLDSEESV 180

Query: 181 MTSFGSGDHGV--GDRKLLNLFI 186
           MTSFGSGD G    + KLLNLF+
Sbjct: 181 MTSFGSGDLGEQRKETKLLNLFV 203

[Close]
BLAST of Sed0018191 vs. ExPASy TrEMBL
Match: A0A1S3BVG9 (LOB domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103493596 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.4e-72
Identity = 145/203 (71.43%), Postives = 164/203 (80.79%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE CVLRSSL WI SPEAQGNATLFLAKFFGRSDLLSF+S+VP HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLS 120
            ALFQSLLFEACGRTVNPVSGAVGLLSSGNWH C+AAA+T+L+GGVL PIPGI+ISGN +
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTILNGGVLRPIPGIEISGNPT 120

Query: 121 VNVEDASLSFNNDVWT--------HQNLPADH--------GRGKEQPLENQRSFDSEESV 180
            N++D+S +FNNDVWT        + + P+D          R K+ PLEN+RS DSEESV
Sbjct: 121 PNLDDSSFTFNNDVWTTTTHNLQFYPSTPSDFRCLPDLGLNRTKKHPLENRRSLDSEESV 180

Query: 181 MTSFGSGDHGV--GDRKLLNLFI 186
           MTSFGSGD G    + KLLNLF+
Sbjct: 181 MTSFGSGDLGEQRKETKLLNLFV 203

[Close]
BLAST of Sed0018191 vs. ExPASy TrEMBL
Match: A0A6J1C6S3 (LOB domain-containing protein 39-like OS=Momordica charantia OX=3673 GN=LOC111008919 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.9e-72
Identity = 147/203 (72.41%), Postives = 163/203 (80.30%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE CVLRS L WI SPE+QGNATLFLAKFFGRSDLLSF+S+VP+HQR
Sbjct: 1   MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQR 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLS 120
            ALFQSLLFEACGRTVNPVSGAVGLLSSGNWH C+AAAETVL GGVL PIPGI +SGN +
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLGGGVLRPIPGIDVSGNST 120

Query: 121 VNVEDASLSFNNDVWTHQNLP------------ADHGRGKEQ--PLENQRSFDSEESVMT 180
            +V+++S+SF+ DVWT QNL             +D G GK     +EN+RS DSEESVMT
Sbjct: 121 GHVDESSVSFSTDVWTTQNLQFYPSVPSGYRRLSDLGGGKNHYPQMENRRSLDSEESVMT 180

Query: 181 SFGSGDHGVGD----RKLLNLFI 186
           SFGSGD G GD    RKLLNLFI
Sbjct: 181 SFGSGDLGDGDRRKERKLLNLFI 203

[Close]
BLAST of Sed0018191 vs. ExPASy TrEMBL
Match: A0A0A0L3S5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G642430 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.7e-70
Identity = 144/205 (70.24%), Postives = 163/205 (79.51%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE CVLRSSL WI SPEAQGNATLFLAKFFGRSDLLSF+S+VP HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLS 120
            ALFQSLLFEACGRTVNPVSGAVGLLS+GNWH C+AAA+T+L+GGVL PIPGI+IS N +
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120

Query: 121 VNVEDASLSFNNDVWT---------HQNLPADH--------GRGK-EQPLENQRSFDSEE 180
            N++D+SL+FN DVWT         + + P+D         GR K   PLEN+RS DSEE
Sbjct: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEE 180

Query: 181 SVMTSFGSGDHG--VGDRKLLNLFI 186
           SVMTSFGSGD G    + KLLNLF+
Sbjct: 181 SVMTSFGSGDLGDQRKETKLLNLFV 205

[Close]
BLAST of Sed0018191 vs. ExPASy TrEMBL
Match: A0A6J1FEE1 (LOB domain-containing protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443315 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.6e-69
Identity = 143/203 (70.44%), Postives = 160/203 (78.82%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSC+GCRVLRKGC+E CVLRSSL WIHSPEAQ NATLFLAKFFGRSDLLSF+++VP+HQR
Sbjct: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLS 120
            ALFQSLLFEACGRTVNPVSGAVGLLSSGNWH C+ AAETVLSGGVL PIPGI++SGN +
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120

Query: 121 VNVEDASLSFNNDVW--THQNL------PADHG----------RGKEQPLENQRSFDSEE 180
            NV+D+SL+ N DVW  T QNL      P+D            R K    EN+RS DSE+
Sbjct: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAVRAKNHTPENRRSLDSED 180

Query: 181 SVMTSFGSGDHGVGDRKLLNLFI 186
           S+MTSFGSGD     RKLLNLFI
Sbjct: 181 SIMTSFGSGDRR-KQRKLLNLFI 202

[Close]
BLAST of Sed0018191 vs. TAIR 10
Match: AT4G37540.1 (LOB domain-containing protein 39 )

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-46
Identity = 88/138 (63.77%), Postives = 110/138 (79.71%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE C+LR  LQWI S E+QG+AT+F+AKFFGR+ L+SF+SSVP  QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLS 120
            ALFQSLLFEACGRTVNPV+GAVG+L + NWH C+AA ETVL GG L PI  +  S +L 
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLESPSLM 120

Query: 121 VNVEDASLSFNNDVWTHQ 139
           ++ +++S  ++ DV  +Q
Sbjct: 121 ISCDESSEIWHQDVSRNQ 138

[Close]
BLAST of Sed0018191 vs. TAIR 10
Match: AT3G49940.1 (LOB domain-containing protein 38 )

HSP 1 Score: 178.7 bits (452), Expect = 4.3e-45
Identity = 83/120 (69.17%), Postives = 100/120 (83.33%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE+C+LR  +QWI SPEAQG+AT+F+AKFFGR+ L+SF+S+VP  Q 
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLS 120
            ALFQSLL+EACGRTVNPV+GAVGLL +GNW+ C+AA ETVL GG L PIP +   G  +
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFA 120

[Close]
BLAST of Sed0018191 vs. TAIR 10
Match: AT5G67420.1 (LOB domain-containing protein 37 )

HSP 1 Score: 174.9 bits (442), Expect = 6.1e-44
Identity = 79/117 (67.52%), Postives = 100/117 (85.47%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE+C+LR  +QWI + +AQG+AT+F+AKFFGR+ L+SF+S+VP+ QR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISG 118
            ALFQSLL+EACGRTVNPV+GA+G+L +GNW+ C+AA ETVL GG L PIP +   G
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHG 117

[Close]
BLAST of Sed0018191 vs. TAIR 10
Match: AT1G67100.1 (LOB domain-containing protein 40 )

HSP 1 Score: 156.0 bits (393), Expect = 3.0e-38
Identity = 70/110 (63.64%), Postives = 89/110 (80.91%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSE+C +R  LQWI S E+Q NAT+FLAKF+GR+ L++ L++ P+H R
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPI 111
            A+F+SLL+EACGR VNP+ G+VGLL SGNWH C+AA E V+ G  + PI
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPI 112

[Close]
BLAST of Sed0018191 vs. TAIR 10
Match: AT3G02550.1 (LOB domain-containing protein 41 )

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-36
Identity = 67/104 (64.42%), Postives = 82/104 (78.85%), Query Frame = 0 

Query: 1   MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQR 60
           MSCNGCRVLRKGCSEDC +R  L WI SPEAQ NAT+FLAKF+GR+ L++ +++ PNH R
Sbjct: 3   MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query: 61  HALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSG 105
             +F+SLL EACGR VNP+ G+VGLL SGNW  C+ A E V+ G
Sbjct: 63  PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106

The following BLAST results are available for this feature:
BLAST of Sed0018191 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038899091.12.7e-7372.20LOB domain-containing protein 39-like [Benincasa hispida][more]
XP_008452637.12.9e-7271.43PREDICTED: LOB domain-containing protein 39-like [Cucumis melo] >KAA0064436.1 LO... [more]
XP_022137491.13.8e-7272.41LOB domain-containing protein 39-like [Momordica charantia][more]
KAG7024296.12.1e-7071.43LOB domain-containing protein 38, partial [Cucurbita argyrosperma subsp. argyros... [more]
XP_004141401.13.6e-7070.24LOB domain-containing protein 39 [Cucumis sativus] >KGN55262.1 hypothetical prot... [more]
BLAST of Sed0018191 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SZE81.9e-4563.77LOB domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=LBD39 PE=2 S... [more]
Q9SN236.0e-4469.17LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 S... [more]
Q9FN118.6e-4367.52LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 S... [more]
Q9ZW964.2e-3763.64LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 S... [more]
Q9M8863.0e-3564.42LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 S... [more]
BLAST of Sed0018191 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VDI51.4e-7271.43LOB domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A1S3BVG91.4e-7271.43LOB domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103493596 PE... [more]
A0A6J1C6S31.9e-7272.41LOB domain-containing protein 39-like OS=Momordica charantia OX=3673 GN=LOC11100... [more]
A0A0A0L3S51.7e-7070.24LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G642430 PE=3 SV... [more]
A0A6J1FEE15.6e-6970.44LOB domain-containing protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443... [more]
BLAST of Sed0018191 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G37540.11.3e-4663.77LOB domain-containing protein 39 [more]
AT3G49940.14.3e-4569.17LOB domain-containing protein 38 [more]
AT5G67420.16.1e-4467.52LOB domain-containing protein 37 [more]
AT1G67100.13.0e-3863.64LOB domain-containing protein 40 [more]
AT3G02550.12.1e-3664.42LOB domain-containing protein 41 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195LOBcoord: 2..101
e-value: 1.6E-24
score: 86.3
IPR004883Lateral organ boundaries, LOBPROSITEPS50891LOBcoord: 1..107
score: 17.672596
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..156
NoneNo IPR availablePANTHERPTHR31304:SF38LOB DOMAIN-CONTAINING PROTEIN 39-LIKEcoord: 1..140
NoneNo IPR availablePANTHERPTHR31304LOB DOMAIN-CONTAINING PROTEIN 38coord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0018191.1Sed0018191.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010468 regulation of gene expression