Sed0018138 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGAAGATCAAAGTTCATCCATCACCGCCTTCTTCTTCTTCTTCCTCCGCCGCCGCCACCGCCGCCGTGATTCCTTCTTCTCCGTATATGGACTACTCCGCCGTACTAAACCAACTTCCGGCGGAGATTCTGCCCCTTCTCGACCCTCTGACCGTCGGCGACTTCGAGGTCTTGGCCTTCATGATCAAAAGCTCAATGCCGGCGAAGAAACGTCCCAAGAGGTTCTGGAAGAGACCCGGTTCTCCACGCGCCCGTCCCGACGGCTCGTGTCGTCACGCGCCGCCGAGGTTTCGGTGTTTTTACTGTCTCGGGAGTTACTGGGAGCGGTGGATCTCGTCGCCGAACCGGGAGTTGATTGATCGGGCCATGGCGGCTTTTGATGCCCGATTCGAACCCTTTATTCCGCCGGTTGCGGAGACGGCGGCGGTTGGTGTTCCGTCGCCGGCGAGGAGAAATGGCGGGGGTTTGGCGCGGAGGGTTTGGCCGGACGTGTTGGGGTTATTCAATTCTCGTTTATGGAGGTTTTGGGGTCCAAATTAG ATGAGGAAGATCAAAGTTCATCCATCACCGCCTTCTTCTTCTTCTTCCTCCGCCGCCGCCACCGCCGCCGTGATTCCTTCTTCTCCGTATATGGACTACTCCGCCGTACTAAACCAACTTCCGGCGGAGATTCTGCCCCTTCTCGACCCTCTGACCGTCGGCGACTTCGAGGTCTTGGCCTTCATGATCAAAAGCTCAATGCCGGCGAAGAAACGTCCCAAGAGGTTCTGGAAGAGACCCGGTTCTCCACGCGCCCGTCCCGACGGCTCGTGTCGTCACGCGCCGCCGAGGTTTCGGTGTTTTTACTGTCTCGGGAGTTACTGGGAGCGGTGGATCTCGTCGCCGAACCGGGAGTTGATTGATCGGGCCATGGCGGCTTTTGATGCCCGATTCGAACCCTTTATTCCGCCGGTTGCGGAGACGGCGGCGGTTGGTGTTCCGTCGCCGGCGAGGAGAAATGGCGGGGGTTTGGCGCGGAGGGTTTGGCCGGACGTGTTGGGGTTATTCAATTCTCGTTTATGGAGGTTTTGGGGTCCAAATTAG ATGAGGAAGATCAAAGTTCATCCATCACCGCCTTCTTCTTCTTCTTCCTCCGCCGCCGCCACCGCCGCCGTGATTCCTTCTTCTCCGTATATGGACTACTCCGCCGTACTAAACCAACTTCCGGCGGAGATTCTGCCCCTTCTCGACCCTCTGACCGTCGGCGACTTCGAGGTCTTGGCCTTCATGATCAAAAGCTCAATGCCGGCGAAGAAACGTCCCAAGAGGTTCTGGAAGAGACCCGGTTCTCCACGCGCCCGTCCCGACGGCTCGTGTCGTCACGCGCCGCCGAGGTTTCGGTGTTTTTACTGTCTCGGGAGTTACTGGGAGCGGTGGATCTCGTCGCCGAACCGGGAGTTGATTGATCGGGCCATGGCGGCTTTTGATGCCCGATTCGAACCCTTTATTCCGCCGGTTGCGGAGACGGCGGCGGTTGGTGTTCCGTCGCCGGCGAGGAGAAATGGCGGGGGTTTGGCGCGGAGGGTTTGGCCGGACGTGTTGGGGTTATTCAATTCTCGTTTATGGAGGTTTTGGGGTCCAAATTAG MRKIKVHPSPPSSSSSSAAATAAVIPSSPYMDYSAVLNQLPAEILPLLDPLTVGDFEVLAFMIKSSMPAKKRPKRFWKRPGSPRARPDGSCRHAPPRFRCFYCLGSYWERWISSPNRELIDRAMAAFDARFEPFIPPVAETAAVGVPSPARRNGGGLARRVWPDVLGLFNSRLWRFWGPN Homology
BLAST of Sed0018138 vs. NCBI nr
Match: KAG6576126.1 (hypothetical protein SDJN03_26765, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 137.9 bits (346), Expect = 8.7e-29 Identity = 96/254 (37.80%), Postives = 119/254 (46.85%), Query Frame = 0
BLAST of Sed0018138 vs. NCBI nr
Match: KAG6592803.1 (hypothetical protein SDJN03_12279, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 135.2 bits (339), Expect = 5.6e-28 Identity = 97/253 (38.34%), Postives = 110/253 (43.48%), Query Frame = 0
BLAST of Sed0018138 vs. NCBI nr
Match: KAG7014644.1 (hypothetical protein SDJN02_24823, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 135.2 bits (339), Expect = 5.6e-28 Identity = 94/254 (37.01%), Postives = 115/254 (45.28%), Query Frame = 0
BLAST of Sed0018138 vs. NCBI nr
Match: KGN46456.2 (hypothetical protein Csa_005246 [Cucumis sativus]) HSP 1 Score: 134.4 bits (337), Expect = 9.6e-28 Identity = 95/263 (36.12%), Postives = 119/263 (45.25%), Query Frame = 0
BLAST of Sed0018138 vs. NCBI nr
Match: XP_022953880.1 (uncharacterized protein LOC111456285 [Cucurbita moschata]) HSP 1 Score: 134.0 bits (336), Expect = 1.3e-27 Identity = 94/254 (37.01%), Postives = 115/254 (45.28%), Query Frame = 0
BLAST of Sed0018138 vs. ExPASy TrEMBL
Match: A0A6J1GQW4 (uncharacterized protein LOC111456285 OS=Cucurbita moschata OX=3662 GN=LOC111456285 PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 6.1e-28 Identity = 94/254 (37.01%), Postives = 115/254 (45.28%), Query Frame = 0
BLAST of Sed0018138 vs. ExPASy TrEMBL
Match: A0A6J1H8S8 (uncharacterized protein LOC111461129 OS=Cucurbita moschata OX=3662 GN=LOC111461129 PE=4 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27 Identity = 96/253 (37.94%), Postives = 108/253 (42.69%), Query Frame = 0
BLAST of Sed0018138 vs. ExPASy TrEMBL
Match: A0A6J1JUQ5 (uncharacterized protein LOC111488030 OS=Cucurbita maxima OX=3661 GN=LOC111488030 PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 6.7e-27 Identity = 93/250 (37.20%), Postives = 108/250 (43.20%), Query Frame = 0
BLAST of Sed0018138 vs. ExPASy TrEMBL
Match: A0A5D3DM01 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002230 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 4.4e-26 Identity = 95/259 (36.68%), Postives = 114/259 (44.02%), Query Frame = 0
BLAST of Sed0018138 vs. ExPASy TrEMBL
Match: A0A1S3CC21 (uncharacterized protein LOC103499074 OS=Cucumis melo OX=3656 GN=LOC103499074 PE=4 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 5.7e-26 Identity = 94/259 (36.29%), Postives = 113/259 (43.63%), Query Frame = 0
BLAST of Sed0018138 vs. TAIR 10
Match: AT5G13090.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 79.0 bits (193), Expect = 4.5e-15 Identity = 75/265 (28.30%), Postives = 101/265 (38.11%), Query Frame = 0
BLAST of Sed0018138 vs. TAIR 10
Match: AT1G24270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13090.1); Has 84 Blast hits to 83 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 61.2 bits (147), Expect = 9.6e-10 Identity = 47/130 (36.15%), Postives = 62/130 (47.69%), Query Frame = 0
BLAST of Sed0018138 vs. TAIR 10
Match: AT1G62422.1 (unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12020.1); Has 87 Blast hits to 86 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 54.7 bits (130), Expect = 9.0e-08 Identity = 42/133 (31.58%), Postives = 59/133 (44.36%), Query Frame = 0
BLAST of Sed0018138 vs. TAIR 10
Match: AT1G12020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62422.1); Has 89 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 52.0 bits (123), Expect = 5.8e-07 Identity = 43/133 (32.33%), Postives = 58/133 (43.61%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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