Sed0018060 (gene) Chayote v1

Overview
NameSed0018060
Typegene
OrganismSechium edule (Chayote v1)
DescriptionGlutamate receptor
LocationLG05: 42147857 .. 42152837 (-)
RNA-Seq ExpressionSed0018060
SyntenySed0018060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATTGCTAACCTTGTAAGTTCTTATACCACTTTGATTGTTAATTTTATGAAAAGTTGAAGAGTACAGGAGAGAAGAACGTGAAATATCATTCTAAAAAAATTATCTTTATTACAGTTATTTAACCAATGCATTTTCAATTCTATTGACTTTTAGTGATATCTAGGATTCTGGATAATCTGACTAATGGTTATTCGGTTCAAGTTAGTCATATCTCATGCTGCTATTTTATGGCAGATTTTTGCAAGCCCTTTAAGGAAGACAAAATTGATCAAAGTACTAAGGTCCTAAGTGTTATCCAGTCGACCCAAATGCAGTAAGGTTTTAATCTATGCTATTTTAAAATACTCATAAATACTCATGCTCATGAATGTAAATGTAAATGAAAGAAATTAGTTGAGCATTCTTATTCACAATTTGAAATTTGTATGCTAATATTTTCAGATTTTGATGCACATTGGGATTAAGATGATTGAGTAAATGTATATGTAAGTTCAACTTTTTTGTTTTTCATGGGCGAAATTATAAAAGAATAGGTAAAAACCTGAACTTTTTTTGTTATCTGCAGGTTTTCTATGAGTTTGATTGAGAATTAGATGAACTCGAGGTACGTGATATTAGTTCAAATGTCTGTCTTGATTATTATCTTTAATATTTTAGGCCGTGTCCTTATGAAGTGTAAAAGTTGCCAAGATTGCCATTGAACAAGCTGTAAAAGATGTGAACATTGTTGCTATTTTCTCTTCTGATTGTACCATTGGAAAAGGTTCCAAGATTGCCATCGAACAAGCTGCAAAAGATGTGAATGCGGATCCCACCATTCTTCCCAGAACTTGGCCAACTGTAGTGGATTTTTGGGTAGAAGGTAACTCCCCCGTCTTTCTTTTTTTGCCTCCCTGTTTTTGCCCCACTTTGTTGCTTTAGTTTTCTGATGTTCTTTTGTGTGTGTTGGCAAAGAGTTTTCTTCTAATCCCGACTTAATACTAACAATGATTTGCCATCACAGGCCTCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTTCCTCTAGTCTCATTTCAGCTACAGATCCTACTCTCTCTGCCCTTCAGTTTCCTTTCTTTGTGAGGGCTGCACAGAATGATTTGTTTCAAATGACTGCAATATTATGATTGGAAAGAGGTTATTGCTATATGTCGATGATGATTATGGGTGGAATGGTATTACAACATTAGGTGATAAGCCTGCCCAAAGGCGACGTAAAATCACGTAGAAGGTGGGCATTAGTCCAAAATGTGGTAAATTTGTGCTAAGTTCTTGTTTGGAAAATTTTCTTAGGGTATAATCTTTATGCTCTCTTTTGCATCTTTCAGGATTCACAGATAAATTGATTGAGGAGGAATTGCCTGCACAAGGATGTGTTGTTGACTTCTTAGGATTTCGTAAAGGAGAAAGTTAGAGAGGCCAAAAAAGATAATAGAGAGGTAAATATCGTTAGTCATATTGTTATGATTATGTTTGTAATAAGTACCAATTATGTACCAATTTTATTCAACCGCTTCTCAGGCTAGTAAAGCATGGAAGAAAGGCATCGAGGAAATTAGCAAAGAAACTAAAGAAGCATTTGAGAAGATGAAATTTTTACAAGTTATATTCTGCACAAACACCTGATATATTCAACGATAAGGTATGATCTACTCTGTTTAAGCCTCTTGCTAATGACGAGCAAAAAGTTATTAAACATGAATTGCATTTTTATTAACCATGGTTACGAACTTCAAATCTAATAGAGAGCTTCCCATCTTTTTCAAACCACGCCGATGTAAGATGATGAAAAGCCTAATCCTTATTAGTTAACATTCTTTAAATTCTCTCCTTAGCTCACATTTCACTTACTTGGTAAGCCTATAGCCATGAAGTTGGGATCTGTAAGTGTTCTTTTACAATCAAGGTTAGTAACCAATATGGATTGACCTAGTGATTAGTGCAATTCATTGCTAATGATAAAATGGATTAAAGTTAGAGAGTTGAATCCATGATGGTTACTTTGGAGTTAGGAAGATTCAATACCTTAAAGTTTTATCTATAAAATTCCTGTTGTAGGAGAGTTAGTTGTCATGTAAGACTAGTACTATCATTAGTTGTCATGTAAGACTAGTACTATCAGCCTACTCTTCTTCGGTTGTGATTGTGAATTTTTGTTTGCAATAAGATATGTATGTATATATACCTGTTTGTTTGTTTTTCACTGCATGCTAGCTGAATATTTCTTAAACTTTAACCGTTAGAGTAATTTTATATTGTTTTTAACTTTTTAATAGGCTGAAGGCCGGACTGGTAATGTTTCAAGGTAGCCCCCCACCCTTGGCCTCAACTTTTCCCAACCCATAAGGTGAGAACTCTATTTTTCTTTGTGTTTGACATTAACATTTTCAAAGGCAAGTGTTCTGTTTTTATAACCTTTATATTTTATGTTTAAATGCCCATGTAACAGTATATACGTCTTCTTTTTGCCTTCTCGATTGGTGGAAGTGTACTTCATGTGATGGTCTCTATTTTAAACGTGCAGGGAATTCGAGATATTCTGTCGCTAGGGTGGTTGCTGCTTCTCATATTCATGAGGTTATGAGGGTGCAATTCTAAGACGTAATCCAGAACCACATGATGATGAGCATTTTGCTGCCATTCGCATTCAAAACAAATTTCGAGATTGGAAGGACAGAAAAGATTTTCTTACTATCCAACAGAGGACTGTTAAAACTCAGGTATGTTAGAAGTAGAACTATTTCTCGTGGAGGGTTATTTGTAATTTTTTGTAACACCTCTACCTTCTGCATCACCTTAAAGTAAGTTCCCACCTGCTCAAAGTTTCAAAAGAACCAAACCTCAACCTCAACCTGCTAAGCAATACCAAAAGTATTATTTACAATTTTCATATACCAGTCAACAATCTATTCTCCCATGCTAGGTACATCATCCAAACAAACATTGTAAAATATATACAAGTACCACAACACAAAACTCCGTACTTCTTAACTAAAACTATTCCCAGTACTTAGTCTATACATTATTTACAAACAAAACAGTTTATAATCCCTGAGGTGTGATCAACTTAGCTATGAGGTGGTTGGCGATCTAAGAGCCGTGTGGCTGTTCACCCGTGAGTGCCTGCAACAACATATCTTGTCGACAAACAAACATAAAGAAAGAAAATATTGAATATCTCAAACAATGCCCACATGGAGCAAGTCTCTCCATTGATATCTAAACCACCTCCCATTCCGGCCTAGTAACCTTCTACTCTCCTCACCACATCTAAATGGAGTTACCAAATCAAGTTTCCCCTTTTCCATGCAAAATTCCATGCTTCCAGTCAGCACCCACTAGCTCTTCCTCAACTCCAAACAAGCGTTGTCCCACTCCCACTCACTCCCAACCAAAAGCAGACAAGAAATCAACTTTACATTCCTTTGCAGCACATTCAACTTCCCATTTCGTCCCCAAAGGTGGCACAGTGGTTGAAGACTTGAGCTTTGAAGGGAGCAGGTATGCTCCCTTTAAGGTCTCGGGTTCAAGACTCACCTGTGACTTTACTCCTTCGATGTCTCTGGTGCCTGACCTAAGGACGGGCATGGTTACCCTTGTTTTAAAAAAAAAAAAACTTCCCATTTCATACACTCCAACAGCTTGTATACATTATAAAAAAAATAAAGGGAAATTCCTCACCTGCAAGTATGAGACCTCCTCGGGTTGTTATCGAATTCCTGCTGTTATCAAACTCCCTGCTTACACAAGACATTACATATTTACAAATTCACACTATGCATATTTAATCATCCATTCTCAATGAGATGTCTATAAGGTAGTAGTTGATTGTACTGTGTTGATAAAAAAAGGGCTGATTGTGTGAGTTAATTTTCGAATCCATCCATATCCAGTTGTTTGAAGTAAAGGCTAGGACTCAAGTCTAACCTTTCCCAACCCATAAGGTCTTAACTCTAGTTTTTTTGTGTGTTTGACATTAAAATTTTCAAAGTCAAGCTTTTGTTAATAACATTTATCTTTTATGTTTAGATTTGCGTGGGAGAGAAGGAAAGAAAGTAGTCTGCACAGGAGGGTTTAAACCAGAACCACAAGAAGCAAAATACATTGGTCACAGAGGATGGCTTTTAAAAACAGGGCAGAAATTAAGGTAATACCAAAACTTGTCTTGCCATTCGTAAACATTAACTCATTTCAATTGATAGTGTTGGGTTACATTTTATTTTGGTTAAAAAGCCATTTTCGTCCTACACTACACCAACTATCATCTTGGTTTTCACTTATTACATTATATTTTTGCATTTGTAGGCTTGCAAATGTGTTTCTTAGTTGGAGTTAGCAAGAATTATACACCTGCAATGGACAGAAGGTACCAACTATAACCCTTTTAAAAAAAAAGGTTAGTTCCTATACCATAATTATTATGAAAATTTCTATATGGGAGACAGTCTTTTCAAATTTATAATTGTTTACCTGGTTTTATTTATTTTGAACTTGAGAGTTTGGACCAACTCAACATTTTGAGTTGGTTAATTCTCCAACATGGGCAACCCAAACTTTATATTATTTAGGTTTGGGTTCTTACATCAAAGATAAAAAAAAAACTAAAATTTTAAAAAAGATGAACGGTGATGTGAAAAGACAAAGGACTATTGTTGGACGTTGATTGGACGAACGATAAATGGAGATCAATGGTACGAGAATACTATTAAAGATGAAATGAATGAAATCAAATAAACTATTACAAAGAGAGTATTGGAAAAATCATACCTAAGAGGGTTTAGCAAAACACAGTAAATTAGCCTTCCATGTAAGGGAATAGGTAGAACTCCTAGGATTGAAGGTCTTAGAGAAGTCCTAGGATATTATTTAGATCTTTAGCTGCTCTCGTATAAAGGATACAACCTCATGGGTGATTATTGGGAAGATGATCTAG

mRNA sequence

ATGAGTATTGCTAACCTTATTGCCATTGAACAAGCTGTAAAAGATGTGAACATTGTTGCTATTTTCTCTTCTGATTGTACCATTGGAAAAGGTTCCAAGATTGCCATCGAACAAGCTGCAAAAGATGTGAATGCGGATCCCACCATTCTTCCCAGAACTTGGCCAACTGTAGTGGATTTTTGGGTAGAAGATTTGCGTGGGAGAGAAGGAAAGAAAGTAGTCTGCACAGGAGGGTTTAAACCAGAACCACAAGAAGCAAAATACATTGGTCACAGAGGATGGCTTTTAAAAACAGGGCAGAAATTAAGCTGCTCTCGTATAAAGGATACAACCTCATGGGTGATTATTGGGAAGATGATCTAG

Coding sequence (CDS)

ATGAGTATTGCTAACCTTATTGCCATTGAACAAGCTGTAAAAGATGTGAACATTGTTGCTATTTTCTCTTCTGATTGTACCATTGGAAAAGGTTCCAAGATTGCCATCGAACAAGCTGCAAAAGATGTGAATGCGGATCCCACCATTCTTCCCAGAACTTGGCCAACTGTAGTGGATTTTTGGGTAGAAGATTTGCGTGGGAGAGAAGGAAAGAAAGTAGTCTGCACAGGAGGGTTTAAACCAGAACCACAAGAAGCAAAATACATTGGTCACAGAGGATGGCTTTTAAAAACAGGGCAGAAATTAAGCTGCTCTCGTATAAAGGATACAACCTCATGGGTGATTATTGGGAAGATGATCTAG

Protein sequence

MSIANLIAIEQAVKDVNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRTWPTVVDFWVEDLRGREGKKVVCTGGFKPEPQEAKYIGHRGWLLKTGQKLSCSRIKDTTSWVIIGKMI
Homology
[Close]
BLAST of Sed0018060 vs. NCBI nr
Match: KAG7037962.1 (Glutamate receptor 3.3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPTT 69

[Close]
BLAST of Sed0018060 vs. NCBI nr
Match: XP_022941510.1 (glutamate receptor 3.3-like [Cucurbita moschata])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPTT 69

[Close]
BLAST of Sed0018060 vs. NCBI nr
Match: XP_023521441.1 (glutamate receptor 3.3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 16  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
           VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Sbjct: 82  VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPTT 119

[Close]
BLAST of Sed0018060 vs. NCBI nr
Match: KAG6608645.1 (Glutamate receptor 3.3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 16  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
           VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Sbjct: 152 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPTT 189

[Close]
BLAST of Sed0018060 vs. NCBI nr
Match: XP_022136591.1 (glutamate receptor 3.3 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPGT 69

[Close]
BLAST of Sed0018060 vs. ExPASy TrEMBL
Match: A0A6J1FTV8 (Glutamate receptor OS=Cucurbita moschata OX=3662 GN=LOC111446790 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPTT 69

[Close]
BLAST of Sed0018060 vs. ExPASy TrEMBL
Match: A0A6J1IYK4 (Glutamate receptor OS=Cucurbita maxima OX=3661 GN=LOC111480363 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-05
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADPT+LP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTVLPTT 69

[Close]
BLAST of Sed0018060 vs. ExPASy TrEMBL
Match: A0A6J1C3X4 (Glutamate receptor OS=Momordica charantia OX=3673 GN=LOC111008258 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPGT 69

[Close]
BLAST of Sed0018060 vs. ExPASy TrEMBL
Match: A0A6J1ICM2 (Glutamate receptor OS=Cucurbita maxima OX=3661 GN=LOC111474412 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADP ILP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPGILPGT 69

[Close]
BLAST of Sed0018060 vs. ExPASy TrEMBL
Match: A0A6J1FCJ4 (Glutamate receptor OS=Cucurbita moschata OX=3662 GN=LOC111442775 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADP ILP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPGILPGT 69

[Close]
BLAST of Sed0018060 vs. TAIR 10
Match: AT1G42540.1 (glutamate receptor 3.3 )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 14 KDVNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          K V I +IFS D  IGK +KIAI++A KDVN++P IL  T
Sbjct: 27 KVVKIGSIFSFDSVIGKVAKIAIDEAVKDVNSNPDILSGT 66

The following BLAST results are available for this feature:
BLAST of Sed0018060 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037962.14.5e-0578.95Glutamate receptor 3.3 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022941510.14.5e-0578.95glutamate receptor 3.3-like [Cucurbita moschata][more]
XP_023521441.14.5e-0578.95glutamate receptor 3.3-like [Cucurbita pepo subsp. pepo][more]
KAG6608645.14.5e-0578.95Glutamate receptor 3.3, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022136591.15.8e-0578.95glutamate receptor 3.3 [Momordica charantia][more]
BLAST of Sed0018060 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0018060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FTV82.2e-0578.95Glutamate receptor OS=Cucurbita moschata OX=3662 GN=LOC111446790 PE=3 SV=1[more]
A0A6J1IYK42.8e-0576.32Glutamate receptor OS=Cucurbita maxima OX=3661 GN=LOC111480363 PE=3 SV=1[more]
A0A6J1C3X42.8e-0578.95Glutamate receptor OS=Momordica charantia OX=3673 GN=LOC111008258 PE=3 SV=1[more]
A0A6J1ICM21.8e-0476.32Glutamate receptor OS=Cucurbita maxima OX=3661 GN=LOC111474412 PE=3 SV=1[more]
A0A6J1FCJ41.8e-0476.32Glutamate receptor OS=Cucurbita moschata OX=3662 GN=LOC111442775 PE=3 SV=1[more]
BLAST of Sed0018060 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G42540.11.1e-0457.50glutamate receptor 3.3 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0018060.1Sed0018060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034220 ion transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015276 ligand-gated ion channel activity