Sed0018060 (gene) Chayote v1

Overview


Name	Sed0018060
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Glutamate receptor
Location	LG05: 42147857 .. 42152837 (-)
RNA-Seq Expression	Sed0018060
Synteny	Sed0018060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATTGCTAACCTTGTAAGTTCTTATACCACTTTGATTGTTAATTTTATGAAAAGTTGAAGAGTACAGGAGAGAAGAACGTGAAATATCATTCTAAAAAAATTATCTTTATTACAGTTATTTAACCAATGCATTTTCAATTCTATTGACTTTTAGTGATATCTAGGATTCTGGATAATCTGACTAATGGTTATTCGGTTCAAGTTAGTCATATCTCATGCTGCTATTTTATGGCAGATTTTTGCAAGCCCTTTAAGGAAGACAAAATTGATCAAAGTACTAAGGTCCTAAGTGTTATCCAGTCGACCCAAATGCAGTAAGGTTTTAATCTATGCTATTTTAAAATACTCATAAATACTCATGCTCATGAATGTAAATGTAAATGAAAGAAATTAGTTGAGCATTCTTATTCACAATTTGAAATTTGTATGCTAATATTTTCAGATTTTGATGCACATTGGGATTAAGATGATTGAGTAAATGTATATGTAAGTTCAACTTTTTTGTTTTTCATGGGCGAAATTATAAAAGAATAGGTAAAAACCTGAACTTTTTTTGTTATCTGCAGGTTTTCTATGAGTTTGATTGAGAATTAGATGAACTCGAGGTACGTGATATTAGTTCAAATGTCTGTCTTGATTATTATCTTTAATATTTTAGGCCGTGTCCTTATGAAGTGTAAAAGTTGCCAAGATTGCCATTGAACAAGCTGTAAAAGATGTGAACATTGTTGCTATTTTCTCTTCTGATTGTACCATTGGAAAAGGTTCCAAGATTGCCATCGAACAAGCTGCAAAAGATGTGAATGCGGATCCCACCATTCTTCCCAGAACTTGGCCAACTGTAGTGGATTTTTGGGTAGAAGGTAACTCCCCCGTCTTTCTTTTTTTGCCTCCCTGTTTTTGCCCCACTTTGTTGCTTTAGTTTTCTGATGTTCTTTTGTGTGTGTTGGCAAAGAGTTTTCTTCTAATCCCGACTTAATACTAACAATGATTTGCCATCACAGGCCTCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTTCCTCTAGTCTCATTTCAGCTACAGATCCTACTCTCTCTGCCCTTCAGTTTCCTTTCTTTGTGAGGGCTGCACAGAATGATTTGTTTCAAATGACTGCAATATTATGATTGGAAAGAGGTTATTGCTATATGTCGATGATGATTATGGGTGGAATGGTATTACAACATTAGGTGATAAGCCTGCCCAAAGGCGACGTAAAATCACGTAGAAGGTGGGCATTAGTCCAAAATGTGGTAAATTTGTGCTAAGTTCTTGTTTGGAAAATTTTCTTAGGGTATAATCTTTATGCTCTCTTTTGCATCTTTCAGGATTCACAGATAAATTGATTGAGGAGGAATTGCCTGCACAAGGATGTGTTGTTGACTTCTTAGGATTTCGTAAAGGAGAAAGTTAGAGAGGCCAAAAAAGATAATAGAGAGGTAAATATCGTTAGTCATATTGTTATGATTATGTTTGTAATAAGTACCAATTATGTACCAATTTTATTCAACCGCTTCTCAGGCTAGTAAAGCATGGAAGAAAGGCATCGAGGAAATTAGCAAAGAAACTAAAGAAGCATTTGAGAAGATGAAATTTTTACAAGTTATATTCTGCACAAACACCTGATATATTCAACGATAAGGTATGATCTACTCTGTTTAAGCCTCTTGCTAATGACGAGCAAAAAGTTATTAAACATGAATTGCATTTTTATTAACCATGGTTACGAACTTCAAATCTAATAGAGAGCTTCCCATCTTTTTCAAACCACGCCGATGTAAGATGATGAAAAGCCTAATCCTTATTAGTTAACATTCTTTAAATTCTCTCCTTAGCTCACATTTCACTTACTTGGTAAGCCTATAGCCATGAAGTTGGGATCTGTAAGTGTTCTTTTACAATCAAGGTTAGTAACCAATATGGATTGACCTAGTGATTAGTGCAATTCATTGCTAATGATAAAATGGATTAAAGTTAGAGAGTTGAATCCATGATGGTTACTTTGGAGTTAGGAAGATTCAATACCTTAAAGTTTTATCTATAAAATTCCTGTTGTAGGAGAGTTAGTTGTCATGTAAGACTAGTACTATCATTAGTTGTCATGTAAGACTAGTACTATCAGCCTACTCTTCTTCGGTTGTGATTGTGAATTTTTGTTTGCAATAAGATATGTATGTATATATACCTGTTTGTTTGTTTTTCACTGCATGCTAGCTGAATATTTCTTAAACTTTAACCGTTAGAGTAATTTTATATTGTTTTTAACTTTTTAATAGGCTGAAGGCCGGACTGGTAATGTTTCAAGGTAGCCCCCCACCCTTGGCCTCAACTTTTCCCAACCCATAAGGTGAGAACTCTATTTTTCTTTGTGTTTGACATTAACATTTTCAAAGGCAAGTGTTCTGTTTTTATAACCTTTATATTTTATGTTTAAATGCCCATGTAACAGTATATACGTCTTCTTTTTGCCTTCTCGATTGGTGGAAGTGTACTTCATGTGATGGTCTCTATTTTAAACGTGCAGGGAATTCGAGATATTCTGTCGCTAGGGTGGTTGCTGCTTCTCATATTCATGAGGTTATGAGGGTGCAATTCTAAGACGTAATCCAGAACCACATGATGATGAGCATTTTGCTGCCATTCGCATTCAAAACAAATTTCGAGATTGGAAGGACAGAAAAGATTTTCTTACTATCCAACAGAGGACTGTTAAAACTCAGGTATGTTAGAAGTAGAACTATTTCTCGTGGAGGGTTATTTGTAATTTTTTGTAACACCTCTACCTTCTGCATCACCTTAAAGTAAGTTCCCACCTGCTCAAAGTTTCAAAAGAACCAAACCTCAACCTCAACCTGCTAAGCAATACCAAAAGTATTATTTACAATTTTCATATACCAGTCAACAATCTATTCTCCCATGCTAGGTACATCATCCAAACAAACATTGTAAAATATATACAAGTACCACAACACAAAACTCCGTACTTCTTAACTAAAACTATTCCCAGTACTTAGTCTATACATTATTTACAAACAAAACAGTTTATAATCCCTGAGGTGTGATCAACTTAGCTATGAGGTGGTTGGCGATCTAAGAGCCGTGTGGCTGTTCACCCGTGAGTGCCTGCAACAACATATCTTGTCGACAAACAAACATAAAGAAAGAAAATATTGAATATCTCAAACAATGCCCACATGGAGCAAGTCTCTCCATTGATATCTAAACCACCTCCCATTCCGGCCTAGTAACCTTCTACTCTCCTCACCACATCTAAATGGAGTTACCAAATCAAGTTTCCCCTTTTCCATGCAAAATTCCATGCTTCCAGTCAGCACCCACTAGCTCTTCCTCAACTCCAAACAAGCGTTGTCCCACTCCCACTCACTCCCAACCAAAAGCAGACAAGAAATCAACTTTACATTCCTTTGCAGCACATTCAACTTCCCATTTCGTCCCCAAAGGTGGCACAGTGGTTGAAGACTTGAGCTTTGAAGGGAGCAGGTATGCTCCCTTTAAGGTCTCGGGTTCAAGACTCACCTGTGACTTTACTCCTTCGATGTCTCTGGTGCCTGACCTAAGGACGGGCATGGTTACCCTTGTTTTAAAAAAAAAAAAACTTCCCATTTCATACACTCCAACAGCTTGTATACATTATAAAAAAAATAAAGGGAAATTCCTCACCTGCAAGTATGAGACCTCCTCGGGTTGTTATCGAATTCCTGCTGTTATCAAACTCCCTGCTTACACAAGACATTACATATTTACAAATTCACACTATGCATATTTAATCATCCATTCTCAATGAGATGTCTATAAGGTAGTAGTTGATTGTACTGTGTTGATAAAAAAAGGGCTGATTGTGTGAGTTAATTTTCGAATCCATCCATATCCAGTTGTTTGAAGTAAAGGCTAGGACTCAAGTCTAACCTTTCCCAACCCATAAGGTCTTAACTCTAGTTTTTTTGTGTGTTTGACATTAAAATTTTCAAAGTCAAGCTTTTGTTAATAACATTTATCTTTTATGTTTAGATTTGCGTGGGAGAGAAGGAAAGAAAGTAGTCTGCACAGGAGGGTTTAAACCAGAACCACAAGAAGCAAAATACATTGGTCACAGAGGATGGCTTTTAAAAACAGGGCAGAAATTAAGGTAATACCAAAACTTGTCTTGCCATTCGTAAACATTAACTCATTTCAATTGATAGTGTTGGGTTACATTTTATTTTGGTTAAAAAGCCATTTTCGTCCTACACTACACCAACTATCATCTTGGTTTTCACTTATTACATTATATTTTTGCATTTGTAGGCTTGCAAATGTGTTTCTTAGTTGGAGTTAGCAAGAATTATACACCTGCAATGGACAGAAGGTACCAACTATAACCCTTTTAAAAAAAAAGGTTAGTTCCTATACCATAATTATTATGAAAATTTCTATATGGGAGACAGTCTTTTCAAATTTATAATTGTTTACCTGGTTTTATTTATTTTGAACTTGAGAGTTTGGACCAACTCAACATTTTGAGTTGGTTAATTCTCCAACATGGGCAACCCAAACTTTATATTATTTAGGTTTGGGTTCTTACATCAAAGATAAAAAAAAAACTAAAATTTTAAAAAAGATGAACGGTGATGTGAAAAGACAAAGGACTATTGTTGGACGTTGATTGGACGAACGATAAATGGAGATCAATGGTACGAGAATACTATTAAAGATGAAATGAATGAAATCAAATAAACTATTACAAAGAGAGTATTGGAAAAATCATACCTAAGAGGGTTTAGCAAAACACAGTAAATTAGCCTTCCATGTAAGGGAATAGGTAGAACTCCTAGGATTGAAGGTCTTAGAGAAGTCCTAGGATATTATTTAGATCTTTAGCTGCTCTCGTATAAAGGATACAACCTCATGGGTGATTATTGGGAAGATGATCTAG

mRNA sequence

ATGAGTATTGCTAACCTTATTGCCATTGAACAAGCTGTAAAAGATGTGAACATTGTTGCTATTTTCTCTTCTGATTGTACCATTGGAAAAGGTTCCAAGATTGCCATCGAACAAGCTGCAAAAGATGTGAATGCGGATCCCACCATTCTTCCCAGAACTTGGCCAACTGTAGTGGATTTTTGGGTAGAAGATTTGCGTGGGAGAGAAGGAAAGAAAGTAGTCTGCACAGGAGGGTTTAAACCAGAACCACAAGAAGCAAAATACATTGGTCACAGAGGATGGCTTTTAAAAACAGGGCAGAAATTAAGCTGCTCTCGTATAAAGGATACAACCTCATGGGTGATTATTGGGAAGATGATCTAG

Coding sequence (CDS)

ATGAGTATTGCTAACCTTATTGCCATTGAACAAGCTGTAAAAGATGTGAACATTGTTGCTATTTTCTCTTCTGATTGTACCATTGGAAAAGGTTCCAAGATTGCCATCGAACAAGCTGCAAAAGATGTGAATGCGGATCCCACCATTCTTCCCAGAACTTGGCCAACTGTAGTGGATTTTTGGGTAGAAGATTTGCGTGGGAGAGAAGGAAAGAAAGTAGTCTGCACAGGAGGGTTTAAACCAGAACCACAAGAAGCAAAATACATTGGTCACAGAGGATGGCTTTTAAAAACAGGGCAGAAATTAAGCTGCTCTCGTATAAAGGATACAACCTCATGGGTGATTATTGGGAAGATGATCTAG

Protein sequence

MSIANLIAIEQAVKDVNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRTWPTVVDFWVEDLRGREGKKVVCTGGFKPEPQEAKYIGHRGWLLKTGQKLSCSRIKDTTSWVIIGKMI

Homology

[Close]

BLAST of Sed0018060 vs. NCBI nr
Match: KAG7037962.1 (Glutamate receptor 3.3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPTT 69

[Close]

BLAST of Sed0018060 vs. NCBI nr
Match: XP_022941510.1 (glutamate receptor 3.3-like [Cucurbita moschata])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPTT 69

[Close]

BLAST of Sed0018060 vs. NCBI nr
Match: XP_023521441.1 (glutamate receptor 3.3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 16  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
           VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Sbjct: 82  VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPTT 119

[Close]

BLAST of Sed0018060 vs. NCBI nr
Match: KAG6608645.1 (Glutamate receptor 3.3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 16  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
           VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Sbjct: 152 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPTT 189

[Close]

BLAST of Sed0018060 vs. NCBI nr
Match: XP_022136591.1 (glutamate receptor 3.3 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPGT 69

[Close]

BLAST of Sed0018060 vs. ExPASy TrEMBL
Match: A0A6J1FTV8 (Glutamate receptor OS=Cucurbita moschata OX=3662 GN=LOC111446790 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPTT 69

[Close]

BLAST of Sed0018060 vs. ExPASy TrEMBL
Match: A0A6J1IYK4 (Glutamate receptor OS=Cucurbita maxima OX=3661 GN=LOC111480363 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-05
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADPT+LP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTVLPTT 69

[Close]

BLAST of Sed0018060 vs. ExPASy TrEMBL
Match: A0A6J1C3X4 (Glutamate receptor OS=Momordica charantia OX=3673 GN=LOC111008258 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPGT 69

[Close]

BLAST of Sed0018060 vs. ExPASy TrEMBL
Match: A0A6J1ICM2 (Glutamate receptor OS=Cucurbita maxima OX=3661 GN=LOC111474412 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADP ILP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPGILPGT 69

[Close]

BLAST of Sed0018060 vs. ExPASy TrEMBL
Match: A0A6J1FCJ4 (Glutamate receptor OS=Cucurbita moschata OX=3662 GN=LOC111442775 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 16 VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          VNI AIFS D TIGK +KIAIE+A KDVNADP ILP T
Sbjct: 32 VNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPGILPGT 69

[Close]

BLAST of Sed0018060 vs. TAIR 10
Match: AT1G42540.1 (glutamate receptor 3.3 )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 14 KDVNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT 54
          K V I +IFS D  IGK +KIAI++A KDVN++P IL  T
Sbjct: 27 KVVKIGSIFSFDSVIGKVAKIAIDEAVKDVNSNPDILSGT 66

The following BLAST results are available for this feature:

BLAST of Sed0018060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037962.1	4.5e-05	78.95	Glutamate receptor 3.3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022941510.1	4.5e-05	78.95	glutamate receptor 3.3-like [Cucurbita moschata]	[more]
XP_023521441.1	4.5e-05	78.95	glutamate receptor 3.3-like [Cucurbita pepo subsp. pepo]	[more]
KAG6608645.1	4.5e-05	78.95	Glutamate receptor 3.3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022136591.1	5.8e-05	78.95	glutamate receptor 3.3 [Momordica charantia]	[more]

BLAST of Sed0018060 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0018060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FTV8	2.2e-05	78.95	Glutamate receptor OS=Cucurbita moschata OX=3662 GN=LOC111446790 PE=3 SV=1	[more]
A0A6J1IYK4	2.8e-05	76.32	Glutamate receptor OS=Cucurbita maxima OX=3661 GN=LOC111480363 PE=3 SV=1	[more]
A0A6J1C3X4	2.8e-05	78.95	Glutamate receptor OS=Momordica charantia OX=3673 GN=LOC111008258 PE=3 SV=1	[more]
A0A6J1ICM2	1.8e-04	76.32	Glutamate receptor OS=Cucurbita maxima OX=3661 GN=LOC111474412 PE=3 SV=1	[more]
A0A6J1FCJ4	1.8e-04	76.32	Glutamate receptor OS=Cucurbita moschata OX=3662 GN=LOC111442775 PE=3 SV=1	[more]

BLAST of Sed0018060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G42540.1	1.1e-04	57.50	glutamate receptor 3.3	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018060.1	Sed0018060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015276	ligand-gated ion channel activity