Sed0018036 (gene) Chayote v1

Overview


Name	Sed0018036
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Transducin/WD40 repeat-like superfamily protein
Location	LG11: 11706982 .. 11718250 (-)
RNA-Seq Expression	Sed0018036
Synteny	Sed0018036

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCATTGTGCTTCTCCTCGACGCTTTCAGCTTGTTTAAATACAACACGCAGGGCTGTGCCTCACAAATCATTCCGCCATTTTGTTCTCTTCACAAATCACGCCTCACAGCTCTTTCCTAGGTTTGTTCTTTTTCCTTCGATGATCGTTGATTTTGTTTGTTAGTTCATCTCTTAACTCCATGATCTACTTCACAATCTGCTGAGTTTCAATTTCGTTAATTCGTCCATTCATTGTTCGAATTCGATTCTTCTATTTTTTGTTTCGACTTCTTTTTCTTCTTGTTTCAAAATTACGATGCGAATCGATTTCTTCAGGATTGCCTTTTGATATCCTTGCCGATAAAGTGATTTTCACTCTTACGGGTACCTCTGATGTCTACATTTGCGAATCCAAACCCTAATAAATCCTTCGAGGTAACCCACTTTCTATTTTCTAGATTTTCTTTTTCGGCTTATTCTGTACATTTACAAGTGTCACTTCTTAGGTTGCTCAACCTCCGAGCGATTCTGTGTCCAGTCTTAGTTTTAGTCCCAAGGCCAATCACTTGGTTGCCACTTCATGGGATAATCAGGTTCGCTTCTTTTTCCCTATTTTTTCTGCTTTTACTTCTTTATTTACTTGTTCCATTTATTTTATACGGTTTATGATCACTACGTTTGAGTGGGCAGTGAGCATAAACTTTACTTTCTATCTGGTAAATAGTAGGGGTGACGTGTTGTACGAAGATGGAGGAGGGTTCTTTCTCTTACTCTTGCTTTATTCCGCATATTCATCCTAGACCGTTTTTGGAGGGTGTACACTAGTTGTACCCTTGAGTAACTGAGAAAGTTGGTGTTCGGCTTTGATCGAAATAAGGCCCCTGGTCACGATGTGAATTTATATGTTTATCACTTCTGCAAGTGCAGGTTCGTTGTTGGGAAATAATGCAAAATGCCGGTAATGTTGCCAGTACGCCCAAGGCTTCTATATCTCATGATCACCCGGTATGTAACAATTTATTTCAATTTTGTGGTCTAATTAAAGTTTTGTTGATTTAAGGTCGAAAATGTCGTAAAGTTATCTTGTATATTGCTTTTTGGCTTAGGTTTTGTGCTCGGCGTGGAAGGACGATGGAACAACTGTGTTTTCTGGAGGCTGCGATAAACAAGTTAAGATGTGGCCCTTACTGTCAGGTGGTCAAGCCATGACTGTAGCTATGCACGAAGCACCTGTCAAAGAAGTTGCCTGGATCCCTGAGATGAGCCTATTGGTCTCTGGAAGCTTGGACAAGACATTAAAGTATAACACTTAATCTGTTGATTCTTAAATTTATCTATATGATCTCTTAATATATATATATATATGCACACACACATATATCTTTATGAATTTTGAACATGCGTTATGTGAAGTTCATATAATCTCTTCAATGAGTAGAACCGTTTCATTGTAGTTTGTATCATCCTAACTCCTAAGAGTTGTTCTTATGAATTTGAGTATGAGTTTTAAATTTGTTTGAAGAGGGCATTTGATACTTGGCATGAGTTTTAAATTGAAATAAGCGTGAGTTTTCCTTCAAGTAAAACTTTAAAAGAATAGGCTTCTATGATAAAAACTTTATTCAAGCATTTTGTTGGAGCACGTGGCAAGAACAAAATAGGCAAATTTTAAAGAAAAAGACTACTATCACAACTTTTTTGATGCTATAGTTTCTTTAGTTGTTACTTGGTGATAGTTCTCCCCTCTTCAACTACTATAGCTTTTCCACCCTCCTATCCAATTGTATAGATCTTTTGTAAATTCTCCCTTACGGTTTATCTCCTACATCAGTGAAATTGTTTCTTATTCCTAAAAAGAATCCTTTAAATCAGTCTGATACATCTCGTCTCGAAGGAAGATGATATTGAAAATAAGTGAGTTCATGTCAATGTAGCACTTATTGGTTTGATATTCTGGAACTCGCATCATGTTAATCTCTCATTTAATATGATGCCAAGTATCAAATGCCCTCTTCAATGAATGATTTTCCTAGTCTTACATGTTCAACCCTTTGTGCCATTGTGTGTCACCATGTGGAAGAATCATCGTAGATCATGGTAGGATACCTATGTTTTCTAATTATAATTAAAAAGAACTTTGATGGGTTTTTTCTATCAATTTAGATATTGGGATACAAGGCAGCCAAACCCAGTGCATACACAACAACTTCCAGATCGCTGTTATTCAATGTCAGTGAGATATCCTCTAATGGTAGTTGGTACGGCAGATAGAAATCTAATAATTTTTAACTTGCAAAATCCTCAGGTACTCGTTTTTGCTTACCTTCTTCTCCTCTATTTTAATAGCTGAAGTTGTGTATAAATGCTATTTTTATTTCATCTTTCATATTTCAAGTCTAATACTGTCAAGTGGTGACAGAGTGAATATAAGAGAATTGTGTCACCCTTGAAGTATCAAACACGATGTGTTGCTGCCTTTCCTGATCAGCAAGGTTTTTTGGTAATATTTACATCCCTTGTATTGATTGGTTTGAATATTTACTTTCTTTCTAGTGTAAATCTTATATTTATGTCTTCATGATATTTTAGCTACTACTGCTTCAAGGTGCTTGCTTCCTTACTTTCTTTTACTTTCTTTTAGATGCTCTGAATGACTTAAATTATTTGATTCCTTAAGTTGATCATATTGTTAAGTTTCTTAATTCAATTTCATGAACCATTCCAGGTTGGTTCAATAGAGGGAAGGGTTGGTGTTCACCACCTTGACGATTCTTTGGCGAATAAGAATTTCACTTTCAAGTGCCACAGGGATGGATCTGAGATATATTCTGTCAACTCCTTGAACTTTCATCCGGTACGTTTTAATACATTAGGCTATTTATTTTGAAGTATAAAAAAAAATCAACAAACCCCAAAACCACTTAACACAAAATCCTGACATTTTTTTGCTAAAAGAACTATGGATCACAGGGTAAAAAATGTCTTCTCCAGCTTTTGAGCCCTGCATACTTCCGGATTTAAAACTAAGTAAAATAAAGGCCATGTATTTGAAGCCTGGCAGATAAGTTTATGCGGTTCCAAATATAGTACACATATAACCCCTGTGAATACAGCCTTCTTACACAGTACATACACGACCTCTTATAGATCATGGGAGACCTACCAATTCTTTTACCATGAATTTACTAAAAACGCATACATGTAGTCTTGTAGATGGAGTTCAAACTTCAAACTCTATGTTTATCTATCCCTCAATCAAGATGAAGGCCATCAATTAGCTGCAAAAGATTACAAACTTCTTTCACTTCCCCTCTCAAACATTTATTCCAGTACTGATGATTCATCATGTATGGCTTGCACCCCTGTTAAGTTTTAGTTAACCACCCTAAATCTTATTTTCCATGTATTCTAGTTATCAGGTCATGCTATTTCTCATGATTTGTCGAAAGTTATCAGGTGCTATGTCAGATTACTATTAGGAGGATTTGTGGAAAGTTATTTGTGAGTTTTATGAAATGGGTATTATTGATTCTAGGATGAATGAAACTTAAGTGTACCTTACTTTGTAGAAAGAAAAAGCTAGAAAAGTAAAAGACTTTTAGACCAACAAGCCTTGTAAGTTGTAACAAGCTTGTACAAGATTATTGTTGAGGTTTTGGTCAATAGGTTGAGGATTGTCCTTCCTAATATGATTTCCAAGACTCGAGAGCCTTTGTAAAAGGCAAAAAAATTCTAGATTAAAATCTTATTGCGACTGAGGCCAATGAGAAAGCTTATGATCTCGTGGATGGAAATTTCTTGAATAGAGTTTTGGAGAAGAAGAGCTTTGAGGTCAAGTGGAGATCGGTCTTGATGTGGAATTATTTTAGATCAACTAATATCTCCATCTGAAAGTTTTGCAACTAGGGTAATCCGGCAAGGTGGTACACCTACACTGTTGCCCTTTCTTTTCTCTTGGTGTTGAATGTTTTAAGTAGGATTGTGTCGATGAGGGTGGTTTAAGGGTGTGCAAGAAGATTTAACGTGGGGTAGGACTGTGTTCTTTTTTTGCCTTTTAGCTTGTTCTTACTTCTTGACACTATTTTCCTATGGGGAGAAAACTCTTTCATTAATCTTAGTAGATCCATGTTTTCTTTGAGGTTATTTATGCTTTTCAGATAAATAGGGCAAGAGTTCTATTTGTGGCTTAAACTACTCTCATGAGAAGCTTTCCTTGTGGGTCGAGGCAGTGAACCAAGTTCATATTCACCTACTTAGGTAGGTCTCCCCTCACTCTTATCCAAGCTGTAAGTGGATTCCAAGTTTTGATAACAGATCCTAGAAAAATTCCAAAAGAGATAGGCTAGTTTGAAAAATGTTTTCTTTAAAGGGTGGACACTTGCTTTTATTCGGGATGTTTTAAGTGCGATTTAAAGTTTTTTCTTATCTTTATTTAGGATCCTTGTCTTCGCTTGAAAGGTTGGTGAGAAACTTCATGTGGTAGGGGTGAGAATCTTATTTAGGATCCTTGCCTATCGAGCTAGGAGGCTTGAGAATTGGGAGTTTGAGGCTTCACAAGATCTCTTAGCCTAGTGTTTATGACACCGCTTCACAAAGGTTGACTCACTGTGGTATAGGGTGATTGTGAGCTGGTAGGATCCTCACCCTTTTGGTGGGTCTCAATGGGGAGTCGAGGGGCCTCACTAGAAATCTCTAGGAAACTATTTCTTTTTGTTTTTTTCTCAGTTTATTAGGTGCTTTGTCAAGGATTGTTTAAGAGCTTATTTTTTGGAGGACCTCAGGACCATTAGTTATGCGACAAACCTCTTTGCTTGTTATTTTCTAGCCTCTACTTCCCTTCAGAGAAGAGGTTGCTCGCGGTGGCCTTTGTGTTGTCCTCTCCTACTTCCTCGTTGTTCTCCTATGGCTTTGTCGTCCTCATACTGTTATGGATCCAGGGAGGGGTGTGAGAATTTGGATCTTTGATCTTTCTAGGGTTTTTTTGCCATTCCTATTTCCACTCTTCGTCTCTACACATCCTTGAGGCTTCTATCTTTGCCTCTCTCTGGAAGAGTGTAATTCCTTAGAAGGTCAAGTTGTTTGTGGGGCAAATTTTACTTAGGAAGTATAACACTTCGGATTTTGTTCAAAGGCACTATTCCTTAGGTTTGTTCATGCGATGGTCCATCATTTGTTGGAGACATGAGGAGAATTTGTCTCATTTTCTTTGGGAGTGAGTTTGCTAATGATTTGTGGGATTGTTGGAGGACTTTGTTTGAGGTCAATGGGGTGCACAATAGAGATGGTCGTTCTTGGTCGGAGGAGGTTCTTTTGCATCCCCTTAAGAAGAGAGGGAAAGTATGATACGTTTTGGGCCTTAGGATATTAAGAAATAATGTAGGGCAGTGTTTTAAAAAGTCCCATAAAGCCCCAAAAAGGCGCAGAAAGGCGCAAGGCGCCATGCTTGCGCCTTGCCTTGCTCAGGCGCAGCGCACAAGATAAGGCGCGCGCCTTACCGCGCCTTTCCTCGAGGATCCCGAGCGCAAAAGGCGCGCGCCTCAAGGGATTTTTTTTTTTTTTACATCCTCAAAATGTAACCAAACCAAAGAAAGAAGAAGAAGAAGAAGATGATGAAATGTCATAAGGAAGAAGATGAAGTGAAAAGTAAGTTTTATATAAAATAAAAGAAAATAGAAAGGTGATGTTGATGGAAATTATTGATTTGACCACTCACAATTAATACATATTTGATTCAAATAGAATTTATTTACATTTAAAATTTGATATCTCTCTCCATAGTTGTTTAATTTACTTAATTAAATATTATCATTATGACCTATTTTCATTAGATACCATTTTTAACCAAAATATTATTATTAAGATGTCTTTCACAATTTTCAACTAAAATTTTATTTATTATATATTTAAAATTTCAATGTACAAATATATTATATATGTATTAATAAATATTTTATTTATTATGTGTCCCCTTCTTTTATATGTTTTTTTGTTTGAACTAAATTTACTAGTTATTGAACTTATTTACTTATTGCTTTTATATTTTATTGGATATTTTACACTTTAGAGACTTAATTGATGTTTTTATAATTTAATAGATTAACATATATGTTTTGTGGTAAATATAATTTTTTAAAATATTTTTTTATATATGGTGTGCCTAGAATATAAAGCCCGTGCCTTTTTTGCGCCTTGCGCCTCAGGCTCCAGAGAGCCTTTGCGCCTTGCGCCTTTAAAAACACTGATGTAGGGGTATATTAGCAAATACTTGGAGAGCAAGTTAGAAGCTTGTGGTTATAAATAGAGGCATTAGAGGAGAAGAGGGATATCAAGAATATTATAGCCATTTTGGTATTGGGCTTGAGAGAGTGTTCTCAAGATGGGAGGTTCAAGTACCTATCAAATACTTGGTTAGTTTGTAGTCTTTTATCCTTTATATTTCAATATATTGTTCGGGTTCTAGTTCGGTTCGTATCAATTTGGTATCAGAGCGGTTTACGAAGATGAGCAAGATGTTCGTTTTGAGCGAATGATGAGATTGCTGGATTCTTTTGAAGCTAATATGAAAGAGATCCTCAAAGAAAGAAGAGAAGCAATTACAACAGGTATTACAACATGTTTTAGAGAATTCAGAGAGGGTTGCAATCCGGCTATAGAGGAAAGTGAAGAAGCAGAGGAAAGTGAAGAAGTGGAAGGGTCAGATTTAGTTTTCAAGAACATACTACACACAGAGAAAAATGCCAAGGTAAGTTTTACAATCAAATCCGTAAATCTGAGTTTCTGTGAAGTTGAAGCCAAACGGATAGAACATTCTTGGCTAAGAAGCACATTAGAGCCAAAGAAAACGGAATACAGAAATGGATTGATTATTCGACCAAATGTAATGAAGAAAAAAAGAGAGGAAAGAATGAAAGTTCTAATGAAGAAAAGAGACCAACCGAGGAGGAGGCCAATGAAGAGTCGTCTTCAATGGAAGATGAAGAGGAAGCGCGGCCGTGTGAAATGGAAGATGAAGAAGAAATGCTACTATTCGAAATGGTCCAAATGGAGGACGAAGGTGAAACGACGTCGTACACCATGGAGATCAGAGAAAACTGATTGGCGTTCGCGGAAGCCAGAAGAGATGAATCGTCATTCGTGCAAGCTGGAGAAGATGGGTAGTCGTTTGGGAGTGCCGAAGAAGGCTGTTGTTTGCACTTGCAGTGGAAATCGGAGAAGAGATCCGGCAAAGCTTTGGGCGAAAAAGACGACCATGGAAGCCTGGAGAAGAACTTCAGTTCACGGTTTAGTGATGAGTTTTAAAAAATAATACAATAATACAATAATAATAATAATAATAAAAGTGAAAAAAAAAAGAAAAAGAAAGAAAGAAGAGGCGGCTAGGGTTTCAAAGTGGAAATGTTTGGTCTGTGAATGACTCTTGGTAAGAGAGAGTATGAAGGGTGGCCTTTTGGTTTTCTTTGGGCCTTTAAAATCATATGAGAAAGAAATGTGGGCTGTATTTGAGGGGAACTTAACTTGAAGTGGAGTGAGTTGCCCAGACACCTCATCTCAGCTGCAACAGCTGCTCCAGCCACCGTCGCTGCCACCCGAACCGAACCGAACAATTTACTGAAATATAAAGGATAAAAGACTACAAACTAACCAAATATTTGATAGGTACTTGAACCTCCCATCTTGAGAACACTCTCTCATGCTCAATACCAAAATGGCTACAATATTCTTGATATCCCTCTTCTCCTCTGATGCCTCTATTTATAACCACAAGCTTCTAACTTGCTCTCCAAGTATTTGCTAATATACCCCTACATTATTTCTTAATATCCTAAGGCCAAAAACGTATCAAAGTATTGTGGCAGACCAACTTCATTGGAGGTTGCGAGGGATTTGGATTGAGAGGAATAATATAATTTTTAAAGGTAAAGAGATGTCGGAAAAGGAGGTCTGAGTGCGCTTCTTAGGATTAATGGCTCCTCATGGGAGTTGTCGTTTGACCTTGGTTTTGTTCATTTTCATTGGAGTCCTTTTTGTAGTTGTTCTGGACTCACGTCAAAGGAAGTTTGGCTTCTTAACTCAAAAATTGAAAGCCATTCGTTTGGCTTTTTAACACAAAAATTGGAAGCCATTTTGCTCTGCAGGAAATCTCCAAAACATTTGGCCGATAAAAAGCTTTATTCTCTCTTTTTTTATTTTCGAAAACTCGAATTGTCACTTCACTTGTATTCCTAGCAACTAATTGCTTGACCTCTTGTCTTTAAAGAAAAATATTCATGACATTTGGAAAATGGGCTTATAGTGTAGTATCCAGGAAAGTTTGAAATCTGGAAGTACTGCTTTCAATGATATTATCCTTCTTCTTATAGACTAATTTCTTCCTTTCAGAGATAGAGATGCACTAATTAGTTTAAGGTTTATCCGTCAGACAAGCCAAAAGTGCTCCATGTATCAACTTTCTTGTGGTTTTTTTTTCTATAATAGGAGTTCAGATCTCCATGTTTTCTTATGACTTCACCCAAAGGCATCTCTATCTCTGACAAAGAAAGAAATTCATGCTTGCTATTAGAAGTTCGTTTTAATAATTTTCTGTTGGGATGGTGGACAGTTTCTTACTATTTTTAAGATGACAAGAATTGTTTTCTGATTGGTGCTCATAGGGTGGTTATTTTCTGATTTTAAGCGACTATCTGCTACCAATAAGAATAACCCAATTTGCTGAATCTTTATTAATGATTCTTTAATTCTTGCTATGTATTTAACTCTCTCTCATTCAGGTGCATCACACTTTTGCAACTGCGGGGTCAGATGGTGCTTTTAATTTCTGGGACAAAGATAGCAAACAGAGGCTTAAGGTGCCTTCAGATTCTTATTAGATTTTTTTTTTCTTGGCTGTCGAGAACTAGTTCCATGTATTTTTCATGTTTTTATTTTTTTCTCTTTTATATTTGTCTCTGTATTTTCCTTTTCACAATCTTAATGAAAAGTTTGTCCCCTTTTTTGAAGAAAAAAAAATTCTTATTAAATTTTTAACTGCATAATCATTGGTCTTCTTCAAGTTTTTTTTTTTTTTTGAGAAGAAACGATTCCATTAAAATATGAAATATGAAGTCCGATAGGACTAATACATTAGAGTCTTCTTCAAGTTTTAGAAAATAGCTTGGTGGGAAATATGTTTATAAACAACTTTCTGACATAGAAAACTTGTTTCCTGGTTAGCTTTATGACAGAGATTAGTATTGATTTATGACGATCAAATTGAGTCAAAACTGGCGTGAGAAATACTTGTTGTGCACCAATGAACTTGAGGAAGAAATCTGCTAAAACATGTCTTTTGTAACTTGTTTTTGCTTTAAAACTAGTTCCTTCTATAATAAAAAGATTAAGAAGGAAAATTATTTTTCTTCTATTCCTCAACGAAGAACACCAGAAAATATATATCTCATGCTCAGTTAAAACGGTCCTATTTAAATGTTACTTTTATGTTGTCTGTAATACTAGTTTTTTCTTTCATCCTAGTTATTTAAATAAAATATATTTAGAGGATTCTTCTTTAAGAATAAGTAGTGAATGATTATCTTTCTTGCTTTTCAGGCCATGTCACGGTGTAGCCAGCCCATAACTTGTAGCTCTTTCAACCAGGATGGTTCAATATATGCCTACTCGGTACGTATCATCTTGATTTTTTGTTCTTTTTCCTAATGACTGATGCTTGCTTCGTCAATTTTACCACCACCATGATCACTCTTCCCTCGAAGATTATCATTGACTGTTTTTTCCAACGGGTCTAGCAATGCGCCTTTTGCTCGGGGTATATAGGGTACCCCTCGAGACTGAAATCTCTTGCTAACAAACCGTGGGAATCCTTTTCTTTATAACTCTTTTTGAAAAATTAAGGGTTTAAGGAACGTTTGTGAAAGTTATTTTTTTTATAAGTAAGCTGAAGTCCGGACATGTGGGGTATGTGCAGGTATGCTACGATTGGAGTAAAGGAGCAGAAAATCACAATCCAGCAACAGCAAAGACTTACATCTACTTGCACCTACCACAGGTACTTTTTTTGGTGTGCAGAATTTTGATCATTTTTATTGACAAAGTATCCGTGTCTGATGCACTCTTGAACACGTGTCCAACACAAAATTTCTTGTCTTTAATTTTTATTTTGATTTTGGATACGTTAAGGTCTTATATCACCACAAATATTTCGAGGATCAGTCATTTAAAATTCATATTGTTTAAGTGATCGACAACACGAACAAGGGAAAATAGGAGGGAAAGTAAAATGGAAGGGGGGAATTAGGGAAAACATGCCCTAGGAAAAAGGGAGAGAAGGAAGGAGTTTGTTTAAGGCTTCAGAGATTCTTGTAACTTTTGTTTTGTGTGCCTAAGATAAGGACTTCTGTTCATTATTGTATTTAAATTTTATTGACTCATAATATGTGGGTTACATTTAAATGCTGATTAAAATTTTGTTTAGTTATTTTTCGTAGCTATAAAGATAGTTAAGTATTTTGAGTTTGATATTTTCAATATTATATAATAAATAAATAAATAAAATAGTGTGTCTAATAATGGTGTCTCCATATACCATCATATCTTTTTTCGTATTCGTGCTTCTTAGATTTCTATTCTTGTTTAGAATGTTGCACTGGGAAATTCATCTTTTGGATGTGTAGGAGGCCGATGTTAAAGGCAAGCCACGGGCTGCGAGCGGCGGAAGAAAGTAGTAGTCGTCACAGTACAATCAGCTATCGTTCTTCTTTTCTGCCCCTTTGAATGCATCTTTTTCCAGTGTCGAATTTCTAATAGGTTTAATCAGGAGTCTTGAACATATCTGTAGGGTTGATTTTAGTGCATAGTGCAATTTTTTTTTGTTCTTTCTTTTAACTGGAAATACTGAAATTTTAAGTACATGGGAGATTTACCTAGTTAAGGTTGAATTTGAAAAACACTAGAACTTTGATGACCAACGATTCAGATTTATTTGTTAAGTTCGATTACAATTGGAGAAGGACAATTGAATTCGTGACCAAGATCAATTGGAGATGTCCCTATCTGTGAGCTAGGTTATTGTTGGTAAAGTTATTCTATTTTGGTATTTGGTAATATTAAAATTTCAAATAGTTAGATAAATTTAAAATTGATGTTATTATCAATTTCAAGTCTACAGATATCGTCTGTCTATTGTTGTCGTCTTCGATTGATGTCATCTACATTTCATCGTCATTTAAATATCATTCTCGACTCATTGCTTCCCTATTACCCTCCATGAATCATGAAAATATAGAGCGTTGAAGC

mRNA sequence

GGCCATTGTGCTTCTCCTCGACGCTTTCAGCTTGTTTAAATACAACACGCAGGGCTGTGCCTCACAAATCATTCCGCCATTTTGTTCTCTTCACAAATCACGCCTCACAGCTCTTTCCTAGGATTGCCTTTTGATATCCTTGCCGATAAAGTGATTTTCACTCTTACGGGTACCTCTGATGTCTACATTTGCGAATCCAAACCCTAATAAATCCTTCGAGGTTGCTCAACCTCCGAGCGATTCTGTGTCCAGTCTTAGTTTTAGTCCCAAGGCCAATCACTTGGTTGCCACTTCATGGGATAATCAGGTTCGTTGTTGGGAAATAATGCAAAATGCCGGTAATGTTGCCAGTACGCCCAAGGCTTCTATATCTCATGATCACCCGGTTTTGTGCTCGGCGTGGAAGGACGATGGAACAACTGTGTTTTCTGGAGGCTGCGATAAACAAGTTAAGATGTGGCCCTTACTGTCAGGTGGTCAAGCCATGACTGTAGCTATGCACGAAGCACCTGTCAAAGAAGTTGCCTGGATCCCTGAGATGAGCCTATTGGTCTCTGGAAGCTTGGACAAGACATTAAAATATTGGGATACAAGGCAGCCAAACCCAGTGCATACACAACAACTTCCAGATCGCTGTTATTCAATGTCAGTGAGATATCCTCTAATGGTAGTTGGTACGGCAGATAGAAATCTAATAATTTTTAACTTGCAAAATCCTCAGAGTGAATATAAGAGAATTGTGTCACCCTTGAAGTATCAAACACGATGTGTTGCTGCCTTTCCTGATCAGCAAGGTTTTTTGGTTGGTTCAATAGAGGGAAGGGTTGGTGTTCACCACCTTGACGATTCTTTGGCGAATAAGAATTTCACTTTCAAGTGCCACAGGGATGGATCTGAGATATATTCTGTCAACTCCTTGAACTTTCATCCGGTGCATCACACTTTTGCAACTGCGGGGTCAGATGGTGCTTTTAATTTCTGGGACAAAGATAGCAAACAGAGGCTTAAGGCCATGTCACGGTGTAGCCAGCCCATAACTTGTAGCTCTTTCAACCAGGATGGTTCAATATATGCCTACTCGGTATGCTACGATTGGAGTAAAGGAGCAGAAAATCACAATCCAGCAACAGCAAAGACTTACATCTACTTGCACCTACCACAGGAGGCCGATGTTAAAGGCAAGCCACGGGCTGCGAGCGGCGGAAGAAAGTAGTAGTCGTCACAGTACAATCAGCTATCGTTCTTCTTTTCTGCCCCTTTGAATGCATCTTTTTCCAGTGTCGAATTTCTAATAGGTTTAATCAGGAGTCTTGAACATATCTGTAGGGTTGATTTTAGTGCATAGTGCAATTTTTTTTTGTTCTTTCTTTTAACTGGAAATACTGAAATTTTAAGTACATGGGAGATTTACCTAGTTAAGGTTGAATTTGAAAAACACTAGAACTTTGATGACCAACGATTCAGATTTATTTGTTAAGTTCGATTACAATTGGAGAAGGACAATTGAATTCGTGACCAAGATCAATTGGAGATGTCCCTATCTGTGAGCTAGGTTATTGTTGGTAAAGTTATTCTATTTTGGTATTTGGTAATATTAAAATTTCAAATAGTTAGATAAATTTAAAATTGATGTTATTATCAATTTCAAGTCTACAGATATCGTCTGTCTATTGTTGTCGTCTTCGATTGATGTCATCTACATTTCATCGTCATTTAAATATCATTCTCGACTCATTGCTTCCCTATTACCCTCCATGAATCATGAAAATATAGAGCGTTGAAGC

Coding sequence (CDS)

ATGTCTACATTTGCGAATCCAAACCCTAATAAATCCTTCGAGGTTGCTCAACCTCCGAGCGATTCTGTGTCCAGTCTTAGTTTTAGTCCCAAGGCCAATCACTTGGTTGCCACTTCATGGGATAATCAGGTTCGTTGTTGGGAAATAATGCAAAATGCCGGTAATGTTGCCAGTACGCCCAAGGCTTCTATATCTCATGATCACCCGGTTTTGTGCTCGGCGTGGAAGGACGATGGAACAACTGTGTTTTCTGGAGGCTGCGATAAACAAGTTAAGATGTGGCCCTTACTGTCAGGTGGTCAAGCCATGACTGTAGCTATGCACGAAGCACCTGTCAAAGAAGTTGCCTGGATCCCTGAGATGAGCCTATTGGTCTCTGGAAGCTTGGACAAGACATTAAAATATTGGGATACAAGGCAGCCAAACCCAGTGCATACACAACAACTTCCAGATCGCTGTTATTCAATGTCAGTGAGATATCCTCTAATGGTAGTTGGTACGGCAGATAGAAATCTAATAATTTTTAACTTGCAAAATCCTCAGAGTGAATATAAGAGAATTGTGTCACCCTTGAAGTATCAAACACGATGTGTTGCTGCCTTTCCTGATCAGCAAGGTTTTTTGGTTGGTTCAATAGAGGGAAGGGTTGGTGTTCACCACCTTGACGATTCTTTGGCGAATAAGAATTTCACTTTCAAGTGCCACAGGGATGGATCTGAGATATATTCTGTCAACTCCTTGAACTTTCATCCGGTGCATCACACTTTTGCAACTGCGGGGTCAGATGGTGCTTTTAATTTCTGGGACAAAGATAGCAAACAGAGGCTTAAGGCCATGTCACGGTGTAGCCAGCCCATAACTTGTAGCTCTTTCAACCAGGATGGTTCAATATATGCCTACTCGGTATGCTACGATTGGAGTAAAGGAGCAGAAAATCACAATCCAGCAACAGCAAAGACTTACATCTACTTGCACCTACCACAGGAGGCCGATGTTAAAGGCAAGCCACGGGCTGCGAGCGGCGGAAGAAAGTAG

Protein sequence

MSTFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTPKASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNPQSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDSLANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDGSIYAYSVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPRAASGGRK

Homology

[Close]

BLAST of Sed0018036 vs. NCBI nr
Match: XP_022144434.1 (protein RAE1-like isoform X1 [Momordica charantia] >XP_022144435.1 protein RAE1-like isoform X1 [Momordica charantia])

HSP 1 Score: 699.5 bits (1804), Expect = 1.4e-197
Identity = 326/344 (94.77%), Postives = 338/344 (98.26%), Query Frame = 0


Query: 1   MSTFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60
           MS FANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP
Sbjct: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60

Query: 61  KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE 120
           KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMT+AMHEAPVKEVAWIPE
Sbjct: 61  KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE 120

Query: 121 MSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNP 180
           MSLLVSGS DKTLKYWDTRQPNPVHTQQLPDRCYSM+VRYPLMVVGTADRNLI+FNLQ+P
Sbjct: 121 MSLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMTVRYPLMVVGTADRNLIVFNLQSP 180

Query: 181 QSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDSLANKNFTFKCHRDGSE 240
           Q+E+KRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD+SLANKNFTFKCHRDGSE
Sbjct: 181 QNEFKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDESLANKNFTFKCHRDGSE 240

Query: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDGSIYAY 300
           IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAM RCSQPI+CS+FNQDGSI+AY
Sbjct: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPISCSTFNQDGSIFAY 300

Query: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPRAASGGRK 345
           SVCYDWSKGAENHNPATAKTYIYLHLPQE++VKGKPR   GGRK
Sbjct: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQESEVKGKPRVGGGGRK 344

[Close]

BLAST of Sed0018036 vs. NCBI nr
Match: XP_038890307.1 (protein RAE1 [Benincasa hispida])

HSP 1 Score: 698.4 bits (1801), Expect = 3.2e-197
Identity = 327/344 (95.06%), Postives = 336/344 (97.67%), Query Frame = 0


Query: 1   MSTFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60
           MS FANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP
Sbjct: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60

Query: 61  KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE 120
           KASISHD PVLCSAWKDDGTTVFSGGCDKQVKMWPLL+GGQAMTVAMHEAPVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLAGGQAMTVAMHEAPVKEVAWIPE 120

Query: 121 MSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNP 180
           MSLLVSGS DKTLKYWDTRQPNPVHTQQLPDRCYSMSVR+PLMVVGTADRNLI+FNLQ P
Sbjct: 121 MSLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRHPLMVVGTADRNLIVFNLQTP 180

Query: 181 QSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDSLANKNFTFKCHRDGSE 240
           QSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD+S+ANKNFTFKCHRDGSE
Sbjct: 181 QSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDESMANKNFTFKCHRDGSE 240

Query: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDGSIYAY 300
           IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPI+CS+FNQDGSI+AY
Sbjct: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPISCSTFNQDGSIFAY 300

Query: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPRAASGGRK 345
           SVCYDWSKGAENHNPATAKTYIYLHLPQE +VKGKPR   GGRK
Sbjct: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEVEVKGKPRVGGGGRK 344

[Close]

BLAST of Sed0018036 vs. NCBI nr
Match: XP_011656080.1 (protein RAE1 [Cucumis sativus] >KGN52656.1 hypothetical protein Csa_009146 [Cucumis sativus])

HSP 1 Score: 693.3 bits (1788), Expect = 1.0e-195
Identity = 322/344 (93.60%), Postives = 337/344 (97.97%), Query Frame = 0


Query: 1   MSTFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60
           M+ FANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGN+ASTP
Sbjct: 1   MAAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNLASTP 60

Query: 61  KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE 120
           KASISHD PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMH+APVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHDAPVKEVAWIPE 120

Query: 121 MSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNP 180
           ++LLVSGS DKTLKYWDTRQPNPVHTQQLPDRCYSM+VR+PLMVVGTADRNLI+FNLQNP
Sbjct: 121 LNLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMAVRHPLMVVGTADRNLIVFNLQNP 180

Query: 181 QSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDSLANKNFTFKCHRDGSE 240
           QSE+KRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD+S+ANKNFTFKCHRDGSE
Sbjct: 181 QSEFKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDESMANKNFTFKCHRDGSE 240

Query: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDGSIYAY 300
           IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPI+CS+FNQDGSI+AY
Sbjct: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPISCSTFNQDGSIFAY 300

Query: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPRAASGGRK 345
           SVCYDWSKGAENHNPATAKTYIYLHLPQE +VKGKPR   GGRK
Sbjct: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEVEVKGKPRVGGGGRK 344

[Close]

BLAST of Sed0018036 vs. NCBI nr
Match: XP_008459578.1 (PREDICTED: protein RAE1 [Cucumis melo] >XP_008459580.1 PREDICTED: protein RAE1 [Cucumis melo] >KAA0039292.1 protein RAE1 [Cucumis melo var. makuwa] >TYK00476.1 protein RAE1 [Cucumis melo var. makuwa])

HSP 1 Score: 691.0 bits (1782), Expect = 5.1e-195
Identity = 321/344 (93.31%), Postives = 336/344 (97.67%), Query Frame = 0


Query: 1   MSTFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60
           M+ FANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGN+ASTP
Sbjct: 1   MAAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNLASTP 60

Query: 61  KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE 120
           KASISHD PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMH+APVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHDAPVKEVAWIPE 120

Query: 121 MSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNP 180
           ++LLVSGS DKTLKYWDTRQPNPVHTQQLPDRCYSM+VR+PLMVVGTADRNLI+FNLQ P
Sbjct: 121 LNLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMAVRHPLMVVGTADRNLIVFNLQTP 180

Query: 181 QSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDSLANKNFTFKCHRDGSE 240
           QSE+KRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD+S+ANKNFTFKCHRDGSE
Sbjct: 181 QSEFKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDESMANKNFTFKCHRDGSE 240

Query: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDGSIYAY 300
           IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPI+CS+FNQDGSI+AY
Sbjct: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPISCSTFNQDGSIFAY 300

Query: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPRAASGGRK 345
           SVCYDWSKGAENHNPATAKTYIYLHLPQE +VKGKPR   GGRK
Sbjct: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEVEVKGKPRVGGGGRK 344

[Close]

BLAST of Sed0018036 vs. NCBI nr
Match: XP_022955507.1 (protein RAE1-like [Cucurbita moschata] >XP_022955508.1 protein RAE1-like [Cucurbita moschata] >KAG7018381.1 Protein RAE1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 689.1 bits (1777), Expect = 1.9e-194
Identity = 324/344 (94.19%), Postives = 334/344 (97.09%), Query Frame = 0


Query: 1   MSTFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60
           MS FANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP
Sbjct: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60

Query: 61  KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE 120
           KASISHD PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE 120

Query: 121 MSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNP 180
           MSLLVSGS DKTLKYWDTRQPNPVHTQQLPDRCYSM+VRYPLMVVGTADRNLI+FNLQNP
Sbjct: 121 MSLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMTVRYPLMVVGTADRNLIVFNLQNP 180

Query: 181 QSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDSLANKNFTFKCHRDGSE 240
           Q+E+KRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD+SLANKNFTFKCHRDGSE
Sbjct: 181 QNEFKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDESLANKNFTFKCHRDGSE 240

Query: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDGSIYAY 300
           IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAM RCSQPI+ S+FNQDGSI+AY
Sbjct: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPISSSTFNQDGSIFAY 300

Query: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPRAASGGRK 345
           SVCYDWSKGAENHNPATAKT IYLHLPQE++VKGKPR    GRK
Sbjct: 301 SVCYDWSKGAENHNPATAKTCIYLHLPQESEVKGKPRVGGSGRK 344

[Close]

BLAST of Sed0018036 vs. ExPASy Swiss-Prot
Match: Q38942 (Protein RAE1 OS=Arabidopsis thaliana OX=3702 GN=RAE1 PE=1 SV=2)

HSP 1 Score: 603.2 bits (1554), Expect = 1.8e-171
Identity = 279/349 (79.94%), Postives = 312/349 (89.40%), Query Frame = 0


Query: 1   MSTF-----ANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGN 60
           M+TF     AN NPNKS+EV   P+DS+SSLSFSP+A+ LVATSWDNQVRCWEI ++  +
Sbjct: 1   MATFGAPATANSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGAS 60

Query: 61  VASTPKASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEV 120
           +AS PKASISHD PVLCSAWKDDGTTVFSGGCDKQ KMWPLLSGGQ +TVAMHE P+  +
Sbjct: 61  LASAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAM 120

Query: 121 AWIPEMSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIF 180
           AWIP M+LL +GS DKTLKYWDTRQ NPVHTQQLPD+CY++SV++PLMVVGTADRNLI+F
Sbjct: 121 AWIPGMNLLATGSWDKTLKYWDTRQQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVF 180

Query: 181 NLQNPQSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDSLANKNFTFKCH 240
           NLQNPQ+E+KRI SPLKYQTRCV AFPDQQGFLVGSIEGRVGVHHLDDS  +KNFTFKCH
Sbjct: 181 NLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLDDSQQSKNFTFKCH 240

Query: 241 RDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDG 300
           RDG++IYSVNSLNFHPVH TFATAGSDGAFNFWDKDSKQRLKAMSRC+QPI CSSFN DG
Sbjct: 241 RDGNDIYSVNSLNFHPVHGTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPIPCSSFNHDG 300

Query: 301 SIYAYSVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPRAASGGRK 345
           SIYAY+ CYDWSKGAENHNPATAK+ I+LHLPQE++VK KPR  + GRK
Sbjct: 301 SIYAYAACYDWSKGAENHNPATAKSSIFLHLPQESEVKAKPRVGATGRK 349

[Close]

BLAST of Sed0018036 vs. ExPASy Swiss-Prot
Match: Q5FVA9 (mRNA export factor OS=Xenopus tropicalis OX=8364 GN=rae1 PE=2 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 3.6e-95
Identity = 177/349 (50.72%), Postives = 228/349 (65.33%), Query Frame = 0


Query: 6   NPNPNKSFEVAQPPSDSVSSLSFSP---KANHLVATSWDNQVRCWEIMQNAGNVASTPKA 65
           N NP K  EV  PP DS+S LSFSP     N L+A SW N VRCWE+  N   +   PKA
Sbjct: 25  NHNPMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAGSWANDVRCWEVQDNGQTI---PKA 84

Query: 66  SISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWI--PE 125
              H  PVL   W DDG+ VF+  CDK  KMW  L+  Q++ +A H+AP+K V W+  P 
Sbjct: 85  QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD-LNSNQSIQIAQHDAPIKTVHWVKAPN 144

Query: 126 MSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNP 185
            S +++GS DK+LK+WDTR PNP+ T QLP+RCY   V YP+ VV TA+R LI++ L+N 
Sbjct: 145 YSCIMTGSWDKSLKFWDTRSPNPLLTLQLPERCYCADVVYPMAVVATAERGLIVYQLENQ 204

Query: 186 QSEYKRIVSPLKYQTRCVAAFPDQQ----GFLVGSIEGRVGVHHLD-DSLANKNFTFKCH 245
            SE++RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H+++  + A  NFTFKCH
Sbjct: 205 PSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 264

Query: 246 RDG-------SEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITC 305
           R          +IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK   +  QPI+ 
Sbjct: 265 RSNGTNTTAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 324

Query: 306 SSFNQDGSIYAYSVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPR 338
            SFN +G+I+AYS  YDWSKG E +NP   K YI+L   + A  + KPR
Sbjct: 325 CSFNHNGNIFAYSSSYDWSKGHEFYNP-QKKNYIFL---RNAAEELKPR 365

[Close]

BLAST of Sed0018036 vs. ExPASy Swiss-Prot
Match: Q7ZWF0 (mRNA export factor OS=Danio rerio OX=7955 GN=rae1 PE=2 SV=2)

HSP 1 Score: 345.5 bits (885), Expect = 6.9e-94
Identity = 174/353 (49.29%), Postives = 229/353 (64.87%), Query Frame = 0


Query: 2   STFANPNPNKSFEVAQPPSDSVSSLSFSP---KANHLVATSWDNQVRCWEIMQNAGNVAS 61
           +T  + NP K  EV  PP DS+S L+FSP     N L+  SW N VRCWE+  N   V  
Sbjct: 21  TTTDSHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQTV-- 80

Query: 62  TPKASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWI 121
            PKA   H  PVL   W DDG+ VF+  CDK  KMW  L+  QA+ +A HE P++ + WI
Sbjct: 81  -PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD-LNSNQAIQIAQHEGPIRTIHWI 140

Query: 122 --PEMSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFN 181
             P  S +++GS DKTLK+WDTR PNP+ + Q+P+RCY   V YP+ VV TA+R LI++ 
Sbjct: 141 KAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVYPMAVVATAERGLIVYQ 200

Query: 182 LQNPQSEYKRIVSPLKYQTRCVAAFPDQQ----GFLVGSIEGRVGVHHLD-DSLANKNFT 241
           L+N  SE++RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H+++  + A  NFT
Sbjct: 201 LENQPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRVAIHYINPPNPAKDNFT 260

Query: 242 FKCHRDG-------SEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQ 301
           FKCHR          +IY+VN+++FHPVH T AT GSDG F+FWDKD++ +LK   +  Q
Sbjct: 261 FKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ 320

Query: 302 PITCSSFNQDGSIYAYSVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPR 338
           PIT   FN +G+I+AY+  YDWSKG E +NP   K YI+L   + A  + KPR
Sbjct: 321 PITACCFNHNGNIFAYASSYDWSKGHEYYNP-QKKNYIFL---RNAAEELKPR 365

[Close]

BLAST of Sed0018036 vs. ExPASy Swiss-Prot
Match: P78406 (mRNA export factor OS=Homo sapiens OX=9606 GN=RAE1 PE=1 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.9e-92
Identity = 177/353 (50.14%), Postives = 228/353 (64.59%), Query Frame = 0


Query: 2   STFANPNPNKSFEVAQPPSDSVSSLSFSP---KANHLVATSWDNQVRCWEIMQNAGNVAS 61
           +T  N NP K  EV   P DS+  LSFSP     N L+A SW N VRCWE+ Q++G   +
Sbjct: 21  ATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEV-QDSGQ--T 80

Query: 62  TPKASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWI 121
            PKA   H  PVL   W DDG+ VF+  CDK  KMW  LS  QA+ +A H+APVK + WI
Sbjct: 81  IPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWI 140

Query: 122 --PEMSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFN 181
             P  S +++GS DKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R LI++ 
Sbjct: 141 KAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQ 200

Query: 182 LQNPQSEYKRIVSPLKYQTRCVAAFPDQQ----GFLVGSIEGRVGVHHLD-DSLANKNFT 241
           L+N  SE++RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H+++  + A  NFT
Sbjct: 201 LENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT 260

Query: 242 FKCHRDG-------SEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQ 301
           FKCHR          +IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK   +  Q
Sbjct: 261 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ 320

Query: 302 PITCSSFNQDGSIYAYSVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPR 338
           PI+   FN +G+I+AY+  YDWSKG E +NP   K YI+L   + A  + KPR
Sbjct: 321 PISACCFNHNGNIFAYASSYDWSKGHEFYNP-QKKNYIFL---RNAAEELKPR 365

[Close]

BLAST of Sed0018036 vs. ExPASy Swiss-Prot
Match: Q5RF99 (mRNA export factor OS=Pongo abelii OX=9601 GN=RAE1 PE=2 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.9e-92
Identity = 177/353 (50.14%), Postives = 228/353 (64.59%), Query Frame = 0


Query: 2   STFANPNPNKSFEVAQPPSDSVSSLSFSP---KANHLVATSWDNQVRCWEIMQNAGNVAS 61
           +T  N NP K  EV   P DS+  LSFSP     N L+A SW N VRCWE+ Q++G   +
Sbjct: 21  ATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEV-QDSGQ--T 80

Query: 62  TPKASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWI 121
            PKA   H  PVL   W DDG+ VF+  CDK  KMW  LS  QA+ +A H+APVK + WI
Sbjct: 81  IPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWI 140

Query: 122 --PEMSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFN 181
             P  S +++GS DKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R LI++ 
Sbjct: 141 KAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQ 200

Query: 182 LQNPQSEYKRIVSPLKYQTRCVAAFPDQQ----GFLVGSIEGRVGVHHLD-DSLANKNFT 241
           L+N  SE++RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H+++  + A  NFT
Sbjct: 201 LENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT 260

Query: 242 FKCHRDG-------SEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQ 301
           FKCHR          +IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK   +  Q
Sbjct: 261 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ 320

Query: 302 PITCSSFNQDGSIYAYSVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPR 338
           PI+   FN +G+I+AY+  YDWSKG E +NP   K YI+L   + A  + KPR
Sbjct: 321 PISACCFNHNGNIFAYASSYDWSKGHEFYNP-QKKNYIFL---RNAAEELKPR 365

[Close]

BLAST of Sed0018036 vs. ExPASy TrEMBL
Match: A0A6J1CSA6 (protein RAE1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014118 PE=4 SV=1)

HSP 1 Score: 699.5 bits (1804), Expect = 6.9e-198
Identity = 326/344 (94.77%), Postives = 338/344 (98.26%), Query Frame = 0


Query: 1   MSTFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60
           MS FANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP
Sbjct: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60

Query: 61  KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE 120
           KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMT+AMHEAPVKEVAWIPE
Sbjct: 61  KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE 120

Query: 121 MSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNP 180
           MSLLVSGS DKTLKYWDTRQPNPVHTQQLPDRCYSM+VRYPLMVVGTADRNLI+FNLQ+P
Sbjct: 121 MSLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMTVRYPLMVVGTADRNLIVFNLQSP 180

Query: 181 QSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDSLANKNFTFKCHRDGSE 240
           Q+E+KRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD+SLANKNFTFKCHRDGSE
Sbjct: 181 QNEFKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDESLANKNFTFKCHRDGSE 240

Query: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDGSIYAY 300
           IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAM RCSQPI+CS+FNQDGSI+AY
Sbjct: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPISCSTFNQDGSIFAY 300

Query: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPRAASGGRK 345
           SVCYDWSKGAENHNPATAKTYIYLHLPQE++VKGKPR   GGRK
Sbjct: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQESEVKGKPRVGGGGRK 344

[Close]

BLAST of Sed0018036 vs. ExPASy TrEMBL
Match: A0A0A0KXV7 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G649250 PE=4 SV=1)

HSP 1 Score: 693.3 bits (1788), Expect = 5.0e-196
Identity = 322/344 (93.60%), Postives = 337/344 (97.97%), Query Frame = 0


Query: 1   MSTFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60
           M+ FANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGN+ASTP
Sbjct: 1   MAAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNLASTP 60

Query: 61  KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE 120
           KASISHD PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMH+APVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHDAPVKEVAWIPE 120

Query: 121 MSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNP 180
           ++LLVSGS DKTLKYWDTRQPNPVHTQQLPDRCYSM+VR+PLMVVGTADRNLI+FNLQNP
Sbjct: 121 LNLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMAVRHPLMVVGTADRNLIVFNLQNP 180

Query: 181 QSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDSLANKNFTFKCHRDGSE 240
           QSE+KRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD+S+ANKNFTFKCHRDGSE
Sbjct: 181 QSEFKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDESMANKNFTFKCHRDGSE 240

Query: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDGSIYAY 300
           IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPI+CS+FNQDGSI+AY
Sbjct: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPISCSTFNQDGSIFAY 300

Query: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPRAASGGRK 345
           SVCYDWSKGAENHNPATAKTYIYLHLPQE +VKGKPR   GGRK
Sbjct: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEVEVKGKPRVGGGGRK 344

[Close]

BLAST of Sed0018036 vs. ExPASy TrEMBL
Match: A0A1S3CAI4 (protein RAE1 OS=Cucumis melo OX=3656 GN=LOC103498666 PE=4 SV=1)

HSP 1 Score: 691.0 bits (1782), Expect = 2.5e-195
Identity = 321/344 (93.31%), Postives = 336/344 (97.67%), Query Frame = 0


Query: 1   MSTFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60
           M+ FANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGN+ASTP
Sbjct: 1   MAAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNLASTP 60

Query: 61  KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE 120
           KASISHD PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMH+APVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHDAPVKEVAWIPE 120

Query: 121 MSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNP 180
           ++LLVSGS DKTLKYWDTRQPNPVHTQQLPDRCYSM+VR+PLMVVGTADRNLI+FNLQ P
Sbjct: 121 LNLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMAVRHPLMVVGTADRNLIVFNLQTP 180

Query: 181 QSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDSLANKNFTFKCHRDGSE 240
           QSE+KRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD+S+ANKNFTFKCHRDGSE
Sbjct: 181 QSEFKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDESMANKNFTFKCHRDGSE 240

Query: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDGSIYAY 300
           IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPI+CS+FNQDGSI+AY
Sbjct: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPISCSTFNQDGSIFAY 300

Query: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPRAASGGRK 345
           SVCYDWSKGAENHNPATAKTYIYLHLPQE +VKGKPR   GGRK
Sbjct: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEVEVKGKPRVGGGGRK 344

[Close]

BLAST of Sed0018036 vs. ExPASy TrEMBL
Match: A0A5D3BQD6 (Protein RAE1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00840 PE=4 SV=1)

HSP 1 Score: 691.0 bits (1782), Expect = 2.5e-195
Identity = 321/344 (93.31%), Postives = 336/344 (97.67%), Query Frame = 0


Query: 1   MSTFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60
           M+ FANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGN+ASTP
Sbjct: 1   MAAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNLASTP 60

Query: 61  KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE 120
           KASISHD PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMH+APVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHDAPVKEVAWIPE 120

Query: 121 MSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNP 180
           ++LLVSGS DKTLKYWDTRQPNPVHTQQLPDRCYSM+VR+PLMVVGTADRNLI+FNLQ P
Sbjct: 121 LNLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMAVRHPLMVVGTADRNLIVFNLQTP 180

Query: 181 QSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDSLANKNFTFKCHRDGSE 240
           QSE+KRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD+S+ANKNFTFKCHRDGSE
Sbjct: 181 QSEFKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDESMANKNFTFKCHRDGSE 240

Query: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDGSIYAY 300
           IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPI+CS+FNQDGSI+AY
Sbjct: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPISCSTFNQDGSIFAY 300

Query: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPRAASGGRK 345
           SVCYDWSKGAENHNPATAKTYIYLHLPQE +VKGKPR   GGRK
Sbjct: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEVEVKGKPRVGGGGRK 344

[Close]

BLAST of Sed0018036 vs. ExPASy TrEMBL
Match: A0A6J1GU54 (protein RAE1-like OS=Cucurbita moschata OX=3662 GN=LOC111457513 PE=4 SV=1)

HSP 1 Score: 689.1 bits (1777), Expect = 9.4e-195
Identity = 324/344 (94.19%), Postives = 334/344 (97.09%), Query Frame = 0


Query: 1   MSTFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60
           MS FANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP
Sbjct: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60

Query: 61  KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE 120
           KASISHD PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE 120

Query: 121 MSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNP 180
           MSLLVSGS DKTLKYWDTRQPNPVHTQQLPDRCYSM+VRYPLMVVGTADRNLI+FNLQNP
Sbjct: 121 MSLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMTVRYPLMVVGTADRNLIVFNLQNP 180

Query: 181 QSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDSLANKNFTFKCHRDGSE 240
           Q+E+KRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD+SLANKNFTFKCHRDGSE
Sbjct: 181 QNEFKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDESLANKNFTFKCHRDGSE 240

Query: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDGSIYAY 300
           IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAM RCSQPI+ S+FNQDGSI+AY
Sbjct: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPISSSTFNQDGSIFAY 300

Query: 301 SVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPRAASGGRK 345
           SVCYDWSKGAENHNPATAKT IYLHLPQE++VKGKPR    GRK
Sbjct: 301 SVCYDWSKGAENHNPATAKTCIYLHLPQESEVKGKPRVGGSGRK 344

[Close]

BLAST of Sed0018036 vs. TAIR 10
Match: AT1G80670.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 603.2 bits (1554), Expect = 1.3e-172
Identity = 279/349 (79.94%), Postives = 312/349 (89.40%), Query Frame = 0


Query: 1   MSTF-----ANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGN 60
           M+TF     AN NPNKS+EV   P+DS+SSLSFSP+A+ LVATSWDNQVRCWEI ++  +
Sbjct: 1   MATFGAPATANSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGAS 60

Query: 61  VASTPKASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEV 120
           +AS PKASISHD PVLCSAWKDDGTTVFSGGCDKQ KMWPLLSGGQ +TVAMHE P+  +
Sbjct: 61  LASAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAM 120

Query: 121 AWIPEMSLLVSGSLDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIF 180
           AWIP M+LL +GS DKTLKYWDTRQ NPVHTQQLPD+CY++SV++PLMVVGTADRNLI+F
Sbjct: 121 AWIPGMNLLATGSWDKTLKYWDTRQQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVF 180

Query: 181 NLQNPQSEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDSLANKNFTFKCH 240
           NLQNPQ+E+KRI SPLKYQTRCV AFPDQQGFLVGSIEGRVGVHHLDDS  +KNFTFKCH
Sbjct: 181 NLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLDDSQQSKNFTFKCH 240

Query: 241 RDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDG 300
           RDG++IYSVNSLNFHPVH TFATAGSDGAFNFWDKDSKQRLKAMSRC+QPI CSSFN DG
Sbjct: 241 RDGNDIYSVNSLNFHPVHGTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPIPCSSFNHDG 300

Query: 301 SIYAYSVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPRAASGGRK 345
           SIYAY+ CYDWSKGAENHNPATAK+ I+LHLPQE++VK KPR  + GRK
Sbjct: 301 SIYAYAACYDWSKGAENHNPATAKSSIFLHLPQESEVKAKPRVGATGRK 349

[Close]

BLAST of Sed0018036 vs. TAIR 10
Match: AT1G15850.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 204.5 bits (519), Expect = 1.3e-52
Identity = 93/133 (69.92%), Postives = 111/133 (83.46%), Query Frame = 0


Query: 2   STFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTPK 61
           +T +  NPN S+E+  P +DS+SSLSFSPKA+ LVATSWD QVRCWEI ++ G++AS PK
Sbjct: 8   ATSSTNNPNNSYEITPPATDSISSLSFSPKADILVATSWDCQVRCWEITRSDGSIASEPK 67

Query: 62  ASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEM 121
            S+SHD PVLCSAWKDDGTTVF+GGCDKQ KMWPLLSG Q  TVAMH+AP  ++AWIP M
Sbjct: 68  VSMSHDQPVLCSAWKDDGTTVFTGGCDKQAKMWPLLSGAQPSTVAMHDAPFNQIAWIPGM 127

Query: 122 SLLVSGSLDKTLK 135
           +LLV+GS DKTLK
Sbjct: 128 NLLVTGSWDKTLK 140

[Close]

BLAST of Sed0018036 vs. TAIR 10
Match: AT3G19590.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 203.0 bits (515), Expect = 3.9e-52
Identity = 118/340 (34.71%), Postives = 187/340 (55.00%), Query Frame = 0


Query: 9   PNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTPKASISHDH 68
           P+   E++ PPSD +S+L FS  ++HL+ +SWD +VR +++  N      + K    H  
Sbjct: 6   PSAGRELSNPPSDGISNLRFSNNSDHLLVSSWDKRVRLYDVSTN------SLKGEFLHGG 65

Query: 69  PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLVSGS 128
            VL   + DD  + FS G D +V+   + + G+   +  H+  V+ V +      +++GS
Sbjct: 66  AVLDCCFHDD-FSGFSVGADYKVRR-IVFNVGKEDILGTHDKAVRCVEYSYAAGQVITGS 125

Query: 129 LDKTLKYWDTR-----QPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNPQSE 188
            DKT+K WD R     +   V T   P+R YSMS+    +VV TA R++ I++L+N    
Sbjct: 126 WDKTVKCWDPRGASGPERTQVGTYLQPERVYSMSLVGHRLVVATAGRHVNIYDLRNMSQP 185

Query: 189 YKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD--DSLANKNFTFKCHRDGSE- 248
            +R  S LKYQTRCV  +P+  G+ + S+EGRV +   D  ++   K + FKCHR     
Sbjct: 186 EQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAAQAKKYAFKCHRKSEAG 245

Query: 249 ---IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDGSI 308
              +Y VNS+ FHP++ TFAT G DG  N WD ++K+RL   S+    I+  SF++DG +
Sbjct: 246 RDIVYPVNSIAFHPIYGTFATGGCDGFVNIWDGNNKKRLYQYSKYPTSISALSFSRDGQL 305

Query: 309 YAYSVCYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPR 338
            A +  Y + +G ++  P      I++    E +VK KP+
Sbjct: 306 LAVASSYTFEEGEKSQEPEA----IFVRSVNEIEVKPKPK 333

[Close]

BLAST of Sed0018036 vs. TAIR 10
Match: AT1G49910.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 196.1 bits (497), Expect = 4.8e-50
Identity = 115/335 (34.33%), Postives = 182/335 (54.33%), Query Frame = 0


Query: 14  EVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTPKASISHDHPVLCS 73
           E++ PPSD +S+L FS  ++HL+ +SWD  VR ++            +    H   VL  
Sbjct: 10  ELSNPPSDGISNLRFSNNSDHLLVSSWDKSVRLYDAN------GDLMRGEFKHGGAVLDC 69

Query: 74  AWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLVSGSLDKTL 133
            + DD ++ FS   D +V+     + G+   +  HE PV+ V +      +++GS DKT+
Sbjct: 70  CFHDD-SSGFSVCADTKVRRID-FNAGKEDVLGTHEKPVRCVEYSYAAGQVITGSWDKTI 129

Query: 134 KYWDTR-----QPNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNPQSEYKRIV 193
           K WD R     +   + T   P+R  S+S+    +VV TA R++ I++L+N     +R  
Sbjct: 130 KCWDPRGASGTERTQIGTYMQPERVNSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQRRE 189

Query: 194 SPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD--DSLANKNFTFKCHR---DGSEI-Y 253
           S LKYQTRCV  +P+  G+ + S+EGRV +   D  ++   K + FKCHR   DG +I Y
Sbjct: 190 SSLKYQTRCVRCYPNGTGYALSSVEGRVSMEFFDLSEAAQAKKYAFKCHRKSEDGRDIVY 249

Query: 254 SVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDGSIYAYSV 313
            VN++ FHP++ TFA+ G DG  N WD ++K+RL   S+    I   SF++DG + A + 
Sbjct: 250 PVNAIAFHPIYGTFASGGCDGFVNIWDGNNKKRLYQYSKYPTSIAALSFSRDGGLLAVAS 309

Query: 314 CYDWSKGAENHNPATAKTYIYLHLPQEADVKGKPR 338
            Y + +G + H P      I++    E +VK KP+
Sbjct: 310 SYTFEEGDKPHEPDA----IFVRSVNEIEVKPKPK 332

[Close]

BLAST of Sed0018036 vs. TAIR 10
Match: AT1G69400.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-27
Identity = 78/305 (25.57%), Postives = 155/305 (50.82%), Query Frame = 0


Query: 14  EVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTPKASISHDHPVLCS 73
           E   P  D+VS L FSP++N+L+  SWD+ +R +++  ++ ++    +A+       L  
Sbjct: 7   EFENPIEDAVSRLRFSPQSNNLLVASWDSYLRLYDVESSSLSLELNSQAA-------LLD 66

Query: 74  AWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLVSGSLDKTL 133
              ++ +T F+ G D  ++ +  L+ G   T+  H+     + +  E   ++S   D+ +
Sbjct: 67  CCFENESTSFTSGSDGFIRRYD-LNAGTVDTIGRHDDISTSIVYSYEKGEVISTGFDEKI 126

Query: 134 KYWDTRQ-PNPVHTQQLPDRCYSMSVRYPLMVVGTADRNLIIFNLQNPQSEYKRIVSPLK 193
           K+WDTRQ  + V +         ++V    +VV   D ++ I++L+N    ++   S ++
Sbjct: 127 KFWDTRQRESLVFSTDAGGAVGCVTVSGNNLVV-CVDASMHIYDLRNLDEAFQSYASQVE 186

Query: 194 YQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDSLANK-NFTFKCH---RDGS-EIYSVNSL 253
              RC+ + P  +G+ VGS++GRV V   + S +++  ++F+CH   R+G  +   +N++
Sbjct: 187 VPIRCITSVPYSRGYAVGSVDGRVAVDFPNTSCSSEIKYSFRCHPKSRNGRLDGVCINAI 246

Query: 254 NFHPV-HHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPITCSSFNQDGSIYAYSVCYDW 312
            F P    TF T  ++G    W+  S++RL  + R S  I   +F+  G + A +  + +
Sbjct: 247 EFSPCGSGTFVTGDNEGYVISWNAKSRRRLNELPRYSNSIASLAFDHTGELLAIASSHTY 302

The following BLAST results are available for this feature:

BLAST of Sed0018036 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144434.1	1.4e-197	94.77	protein RAE1-like isoform X1 [Momordica charantia] >XP_022144435.1 protein RAE1-...	[more]
XP_038890307.1	3.2e-197	95.06	protein RAE1 [Benincasa hispida]	[more]
XP_011656080.1	1.0e-195	93.60	protein RAE1 [Cucumis sativus] >KGN52656.1 hypothetical protein Csa_009146 [Cucu...	[more]
XP_008459578.1	5.1e-195	93.31	PREDICTED: protein RAE1 [Cucumis melo] >XP_008459580.1 PREDICTED: protein RAE1 [...	[more]
XP_022955507.1	1.9e-194	94.19	protein RAE1-like [Cucurbita moschata] >XP_022955508.1 protein RAE1-like [Cucurb...	[more]

BLAST of Sed0018036 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38942	1.8e-171	79.94	Protein RAE1 OS=Arabidopsis thaliana OX=3702 GN=RAE1 PE=1 SV=2	[more]
Q5FVA9	3.6e-95	50.72	mRNA export factor OS=Xenopus tropicalis OX=8364 GN=rae1 PE=2 SV=1	[more]
Q7ZWF0	6.9e-94	49.29	mRNA export factor OS=Danio rerio OX=7955 GN=rae1 PE=2 SV=2	[more]
P78406	2.9e-92	50.14	mRNA export factor OS=Homo sapiens OX=9606 GN=RAE1 PE=1 SV=1	[more]
Q5RF99	2.9e-92	50.14	mRNA export factor OS=Pongo abelii OX=9601 GN=RAE1 PE=2 SV=1	[more]

BLAST of Sed0018036 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSA6	6.9e-198	94.77	protein RAE1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014118 PE=4...	[more]
A0A0A0KXV7	5.0e-196	93.60	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G...	[more]
A0A1S3CAI4	2.5e-195	93.31	protein RAE1 OS=Cucumis melo OX=3656 GN=LOC103498666 PE=4 SV=1	[more]
A0A5D3BQD6	2.5e-195	93.31	Protein RAE1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00840 P...	[more]
A0A6J1GU54	9.4e-195	94.19	protein RAE1-like OS=Cucurbita moschata OX=3662 GN=LOC111457513 PE=4 SV=1	[more]

BLAST of Sed0018036 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80670.1	1.3e-172	79.94	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G15850.1	1.3e-52	69.92	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G19590.1	3.9e-52	34.71	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G49910.1	4.8e-50	34.33	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G69400.1	2.0e-27	25.57	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 256..270 score: 29.22 coord: 124..138 score: 42.94 coord: 35..49 score: 29.43
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 98..137 e-value: 1.7E-5 score: 34.3 coord: 225..269 e-value: 0.0021 score: 27.3 coord: 140..176 e-value: 170.0 score: 3.0 coord: 57..95 e-value: 1.5E-4 score: 31.1 coord: 9..48 e-value: 0.001 score: 28.4 coord: 181..220 e-value: 340.0 score: 1.0
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 21..47 e-value: 0.0023 score: 18.8 coord: 230..269 e-value: 0.019 score: 15.8 coord: 108..137 e-value: 0.025 score: 15.4 coord: 66..94 e-value: 0.022 score: 15.6
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 244..278 score: 9.806668
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 63..104 score: 10.842632
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 16..49 score: 10.307941
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 105..146 score: 14.552052
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 2..338 e-value: 6.2E-108 score: 363.4
None	No IPR available	PANTHER	PTHR10971	MRNA EXPORT FACTOR AND BUB3	coord: 5..340
None	No IPR available	PANTHER	PTHR10971:SF27	PLANT POLY(A)+ RNA EXPORT PROTEIN	coord: 5..340
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 63..94 score: 8.544697
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 105..139 score: 11.154684
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 16..49 score: 8.676514
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 18..300

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018036.1	Sed0018036.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006405	RNA export from nucleus
biological_process	GO:0000972	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0005515	protein binding