Sed0018011 (gene) Chayote v1

Overview
NameSed0018011
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG05: 542696 .. 542980 (-)
RNA-Seq ExpressionSed0018011
SyntenySed0018011
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCAATTTGGTTTCCTTTTAGCCATTGTGTTTGTTCTTGCCAACACCCATTGGCTCGAAGGTTGCCGAACCATGAAAGAGGATCGACAAAACTGGTCCATGGTGTTTCAGCAGTCGCTCCAGAGGGTGCCCGTTCCTCCCTCTGCGGTAAACGGTGGCTCGAATATTCCGGTACCGGTCGGGCAAATGACCTTTGCTGGAAAATCCACGGCCGCGCCGGCACACACCTATCCGGATCATGTACCAGGTCCCTTTGGTGTGGCCTTGAAGACAAACTAA

mRNA sequence

ATGAAGATCCAATTTGGTTTCCTTTTAGCCATTGTGTTTGTTCTTGCCAACACCCATTGGCTCGAAGGTTGCCGAACCATGAAAGAGGATCGACAAAACTGGTCCATGGTGTTTCAGCAGTCGCTCCAGAGGGTGCCCGTTCCTCCCTCTGCGGTAAACGGTGGCTCGAATATTCCGGTACCGGTCGGGCAAATGACCTTTGCTGGAAAATCCACGGCCGCGCCGGCACACACCTATCCGGATCATGTACCAGGTCCCTTTGGTGTGGCCTTGAAGACAAACTAA

Coding sequence (CDS)

ATGAAGATCCAATTTGGTTTCCTTTTAGCCATTGTGTTTGTTCTTGCCAACACCCATTGGCTCGAAGGTTGCCGAACCATGAAAGAGGATCGACAAAACTGGTCCATGGTGTTTCAGCAGTCGCTCCAGAGGGTGCCCGTTCCTCCCTCTGCGGTAAACGGTGGCTCGAATATTCCGGTACCGGTCGGGCAAATGACCTTTGCTGGAAAATCCACGGCCGCGCCGGCACACACCTATCCGGATCATGTACCAGGTCCCTTTGGTGTGGCCTTGAAGACAAACTAA

Protein sequence

MKIQFGFLLAIVFVLANTHWLEGCRTMKEDRQNWSMVFQQSLQRVPVPPSAVNGGSNIPVPVGQMTFAGKSTAAPAHTYPDHVPGPFGVALKTN
Homology
BLAST of Sed0018011 vs. NCBI nr
Match: KAG6571505.1 (hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.4 bits (355), Expect = 4.1e-30
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 0

Query: 1  MKIQFGFLLAIVFVLANTHWLEGCRTMKEDRQNWSMVFQQSLQRVPVPPSAVNGGSNIPV 60
          MKIQF FLLAIV +LAN H L+ CRTMK+DRQ WS++ QQSLQR PVPPSA NGG+ IPV
Sbjct: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSILLQQSLQRAPVPPSAKNGGTTIPV 60

Query: 61 PVGQMTFAGKSTAAPAHTYPDHVPGPFGVALKTN 95
          P+GQ  F GKST +PAH+Y   VP PFGVA+KTN
Sbjct: 61 PLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMKTN 94

BLAST of Sed0018011 vs. NCBI nr
Match: KAG6571503.1 (hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-28
Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 0

Query: 1  MKIQFGFLLAIVFVLANTHWLEGCRTMKEDRQNWS-MVFQQSLQRVPVPPSAVNGGSNIP 60
          MKIQF FLLAI+ VLAN H L+ CRTMKEDRQ WS ++ QQSLQR PVPPSA NGG+ IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60

Query: 61 VPVGQMTFAGKSTAAPAHTYPDHVPGPFGVALKTN 95
          VP+GQ +F GKST +PAH+Y   VP PFGVA+ TN
Sbjct: 61 VPLGQRSFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95

BLAST of Sed0018011 vs. NCBI nr
Match: KAG6571501.1 (hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.7 bits (330), Expect = 3.2e-27
Identity = 64/95 (67.37%), Postives = 74/95 (77.89%), Query Frame = 0

Query: 1  MKIQFGFLLAIVFVLANTHWLEGCRTMKEDRQNWS-MVFQQSLQRVPVPPSAVNGGSNIP 60
          MKIQF FLLAI+ VLAN H L+ CRTMKEDRQ WS ++ QQSL+RVPVPPSA NGG+ IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLKRVPVPPSAQNGGTTIP 60

Query: 61 VPVGQMTFAGKSTAAPAHTYPDHVPGPFGVALKTN 95
            +GQ  F GKST +PAH+Y   VP PFGVA+ TN
Sbjct: 61 TQLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95

BLAST of Sed0018011 vs. NCBI nr
Match: KAG6571506.1 (hypothetical protein SDJN03_28234, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-25
Identity = 61/94 (64.89%), Postives = 69/94 (73.40%), Query Frame = 0

Query: 1  MKIQFGFLLAIVFVLANTHWLEGCRTMKEDRQNWSMVFQQSLQRVPVPPSAVNGGSNIPV 60
          MKIQF F+LAI  VLAN H L+ CR MK D+Q WSMV QQSLQR PVPPS  +GG+ IPV
Sbjct: 1  MKIQFAFILAIFLVLANVHQLQSCRIMKVDQQKWSMVLQQSLQRAPVPPSGKDGGTTIPV 60

Query: 61 PVGQMTFAGKSTAAPAHTYPDHVPGPFGVALKTN 95
          P+G+  FAGK  A PA  YPDH+  P GVAL TN
Sbjct: 61 PLGERAFAGKFMAPPADAYPDHLLIPSGVALNTN 94

BLAST of Sed0018011 vs. NCBI nr
Match: KAG6571504.1 (hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-25
Identity = 63/96 (65.62%), Postives = 73/96 (76.04%), Query Frame = 0

Query: 1  MKIQFGFLLAIVFVLANTHWLEGCRTMKEDRQNWS-MVFQQSLQRVPVPPSAVNGGSNIP 60
          MKIQF FLLAI+ VLAN H L+ CRTMKED Q WS ++ QQSLQR PVPP+A NGG+ IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDPQKWSILLLQQSLQRAPVPPNAKNGGTTIP 60

Query: 61 VPVGQMTFAGKSTAAPAHTYPDHVPGPFGV-ALKTN 95
           P+GQ  F GKST +PAH+Y   VP P GV A+KTN
Sbjct: 61 TPLGQRAFVGKSTPSPAHSYHHQVPVPLGVAAMKTN 96

BLAST of Sed0018011 vs. ExPASy TrEMBL
Match: A0A5D3B777 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63958G00010 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.3e-25
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 0

Query: 1  MKIQFGFLLAIVFVLANTHWLEGCRTMKEDRQNWSMVFQQSLQRVPVPPSAVNGGSNIPV 60
          MKIQF F  AI+ +LAN H L+ CRTMK+D++ WSM+ QQSLQR PVPPS  +G +NIPV
Sbjct: 1  MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPV 60

Query: 61 PVGQMTFAGKSTAAPAHTYPDHVPGPFGVALKTN 95
          P+GQ  FAGKST  PA   PD++  P GVALKTN
Sbjct: 61 PLGQQAFAGKSTVPPAFPDPDNLEVPSGVALKTN 94

BLAST of Sed0018011 vs. ExPASy TrEMBL
Match: A0A0A0LCY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.4e-22
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 0

Query: 1  MKIQFGFLLAIVFVLANTHWLEGCRTMKEDRQNWSM---VFQQSLQRVPVPPSAVNGGSN 60
          MKIQF FLLAI+ +LANTH L+ CRT+K+D+QNWS+   + QQSLQRVPVPPSA NG +N
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPVGQMTFAGKSTAAPAHTY 80
          IPVPVGQ  FAGK++AA A  Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6571505.14.1e-3070.21hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571503.11.0e-2869.47hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571501.13.2e-2767.37hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571506.11.0e-2564.89hypothetical protein SDJN03_28234, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571504.11.8e-2565.63hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3B7773.3e-2562.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LCY54.4e-2268.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0018011.1Sed0018011.1mRNA