Sed0017943 (gene) Chayote v1

Overview


Name	Sed0017943
Type	gene
Organism	Sechium edule (Chayote v1)
Description	anther-specific protein BCP1-like
Location	LG03: 42433603 .. 42433935 (+)
RNA-Seq Expression	Sed0017943
Synteny	Sed0017943

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACGCCAATTTGTTATTCTCGCTGTCGTCCTCTTTGCTGTCATCGGCTTCGCCTGCGCTGCCAAGCCAGCAGAGTCTCCCAAGGGCTCTGCTGATAATGCCGACGTCGGAGCTATCTTGGCTCCGGGTGCTGATCACACTGTTGGAAACACAGACGGGGCCGCAGCTCCTGGTGCTGGCGATGCCGTGGTTGAAGGCCCCGTCGGCGAACCTGGTGCCGAAGGAGCTACCGGCTCTGCGCCTGCGGAATCACCCCACGGCGGTGCCTCTGCCGTGAAATTCCCTGCCGTTGCTGCCGTGGCTGCGGTTGCAGGCTTTTTCTTCTTCTAA

mRNA sequence

ATGGCACGCCAATTTGTTATTCTCGCTGTCGTCCTCTTTGCTGTCATCGGCTTCGCCTGCGCTGCCAAGCCAGCAGAGTCTCCCAAGGGCTCTGCTGATAATGCCGACGTCGGAGCTATCTTGGCTCCGGGTGCTGATCACACTGTTGGAAACACAGACGGGGCCGCAGCTCCTGGTGCTGGCGATGCCGTGGTTGAAGGCCCCGTCGGCGAACCTGGTGCCGAAGGAGCTACCGGCTCTGCGCCTGCGGAATCACCCCACGGCGGTGCCTCTGCCGTGAAATTCCCTGCCGTTGCTGCCGTGGCTGCGGTTGCAGGCTTTTTCTTCTTCTAA

Coding sequence (CDS)

ATGGCACGCCAATTTGTTATTCTCGCTGTCGTCCTCTTTGCTGTCATCGGCTTCGCCTGCGCTGCCAAGCCAGCAGAGTCTCCCAAGGGCTCTGCTGATAATGCCGACGTCGGAGCTATCTTGGCTCCGGGTGCTGATCACACTGTTGGAAACACAGACGGGGCCGCAGCTCCTGGTGCTGGCGATGCCGTGGTTGAAGGCCCCGTCGGCGAACCTGGTGCCGAAGGAGCTACCGGCTCTGCGCCTGCGGAATCACCCCACGGCGGTGCCTCTGCCGTGAAATTCCCTGCCGTTGCTGCCGTGGCTGCGGTTGCAGGCTTTTTCTTCTTCTAA

Protein sequence

MARQFVILAVVLFAVIGFACAAKPAESPKGSADNADVGAILAPGADHTVGNTDGAAAPGAGDAVVEGPVGEPGAEGATGSAPAESPHGGASAVKFPAVAAVAAVAGFFFF

Homology

[Close]

BLAST of Sed0017943 vs. NCBI nr
Match: XP_038885796.1 (outer membrane protein H.8-like [Benincasa hispida])

HSP 1 Score: 128.3 bits (321), Expect = 4.2e-26
Identity = 78/110 (70.91%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 1   MARQFVILAVVLFAVIGFACAAKPAESPKGSADNADVGAILAPGADHTVGNTDGAAAPGA 60
           MARQFV+ A+VLFAVIGFACAA PAESPK SADNADVGA LAPGA++ +GNT+GA AP  
Sbjct: 1   MARQFVVFALVLFAVIGFACAATPAESPKASADNADVGAQLAPGAENEIGNTEGADAPAG 60

Query: 61  GDAVVEGPVGEPGAEGATGSAPAESPHGGASAVKFPAVAAVAAVAGFFFF 111
            + VVE P+G P A  A G  PAESP  GASAVKF A  A AAVAGFFFF
Sbjct: 61  SEDVVEAPIGGPDA-AAAGFVPAESPKSGASAVKFSATVAGAAVAGFFFF 109

[Close]

BLAST of Sed0017943 vs. NCBI nr
Match: XP_022997549.1 (anther-specific protein BCP1-like [Cucurbita maxima])

HSP 1 Score: 124.0 bits (310), Expect = 7.9e-25
Identity = 72/109 (66.06%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 1   MARQFVILAVVLFAVIGFACAAKPAESPKGSADNADVGAILAPGADHTVGNTDGAAAPGA 60
           MARQFV+LA++LFA++GFACAA PAESPKGSA+N DVG +LAPGAD  +GNTDG  A   
Sbjct: 1   MARQFVVLALLLFALVGFACAASPAESPKGSANNTDVGDLLAPGADKEIGNTDGGDATDG 60

Query: 61  GDAVVEGPVGEPGAEGATGSAPAESPHGGASAVKFPAVAAVAAVAGFFF 110
            D VVEGP+G PG  G   S PAE+P  GASAV+  AVAA+ AVAG+FF
Sbjct: 61  SDDVVEGPIGGPGVPGGE-SVPAEAPKSGASAVELSAVAALVAVAGYFF 108

[Close]

BLAST of Sed0017943 vs. NCBI nr
Match: XP_016899951.1 (PREDICTED: classical arabinogalactan protein 11-like [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-24
Identity = 76/110 (69.09%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 1   MARQFVILAVVLFAVIGFACAAKPAESPKGSADNADVGAILAPGADHTVGNTDGAAAPGA 60
           MARQFV+ A+VLFAVIGFACAA PAE+PKGSAD+A  GA LAP AD+ +GNT+GA AP  
Sbjct: 1   MARQFVVFALVLFAVIGFACAASPAEAPKGSADSAGAGATLAPAADNAIGNTEGADAPAG 60

Query: 61  GDAVVEGPVGEPGAEGATGSAPAESPHGGASAVKFPAVAAVAAVAGFFFF 111
            + VVE PVG PG+  A G  PA +P  GASA+KF AVAAVAAVAGFFFF
Sbjct: 61  SNEVVEAPVGGPGS-AAAGVVPAPAP-SGASALKFSAVAAVAAVAGFFFF 108

[Close]

BLAST of Sed0017943 vs. NCBI nr
Match: XP_022152212.1 (anther-specific protein BCP1 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 75/113 (66.37%), Postives = 85/113 (75.22%), Query Frame = 0


Query: 1   MARQFVILAVVLFAVIGFACAAKPAESPKGSADN--ADVGAILAPGADHTVGNTDG-AAA 60
           MARQFV  A+VLFAV+GFACAA PAE PK +A++  AD GA  APGAD+ +GNTDG AAA
Sbjct: 1   MARQFVAFALVLFAVVGFACAASPAEPPKAAANSTAADAGAAAAPGADNEIGNTDGAAAA 60

Query: 61  PGAGDAVVEGPVGEPGAEGATGSAPAESPHGGASAVKFPAVAAVAAVAGFFFF 111
           PGAG+ +VEGPVG PGA       PAESP  GA AVK  AVA VAA+AGFF F
Sbjct: 61  PGAGEDIVEGPVGGPGAAAGGDLVPAESPKSGAEAVKISAVAGVAAIAGFFCF 113

[Close]

BLAST of Sed0017943 vs. NCBI nr
Match: XP_022962552.1 (anther-specific protein BCP1-like [Cucurbita moschata])

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-22
Identity = 70/109 (64.22%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MARQFVILAVVLFAVIGFACAAKPAESPKGSADNADVGAILAPGADHTVGNTDGAAAPGA 60
           MARQFV+LA+VLFA++GFA AA P+ESPKGSA+N DVG +LAPGAD  +GNTDG  A   
Sbjct: 1   MARQFVVLALVLFAIVGFATAASPSESPKGSANNTDVGDLLAPGADKEIGNTDGGDATNG 60

Query: 61  GDAVVEGPVGEPGAEGATGSAPAESPHGGASAVKFPAVAAVAAVAGFFF 110
            D VVEGP+G PG  G   S PAE+P  GASAV+F   +A+ AVAGFFF
Sbjct: 61  SDDVVEGPIGGPGVPGGE-SVPAEAPKSGASAVEF---SALVAVAGFFF 105

[Close]

BLAST of Sed0017943 vs. ExPASy TrEMBL
Match: A0A6J1KBR3 (anther-specific protein BCP1-like OS=Cucurbita maxima OX=3661 GN=LOC111492442 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.8e-25
Identity = 72/109 (66.06%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 1   MARQFVILAVVLFAVIGFACAAKPAESPKGSADNADVGAILAPGADHTVGNTDGAAAPGA 60
           MARQFV+LA++LFA++GFACAA PAESPKGSA+N DVG +LAPGAD  +GNTDG  A   
Sbjct: 1   MARQFVVLALLLFALVGFACAASPAESPKGSANNTDVGDLLAPGADKEIGNTDGGDATDG 60

Query: 61  GDAVVEGPVGEPGAEGATGSAPAESPHGGASAVKFPAVAAVAAVAGFFF 110
            D VVEGP+G PG  G   S PAE+P  GASAV+  AVAA+ AVAG+FF
Sbjct: 61  SDDVVEGPIGGPGVPGGE-SVPAEAPKSGASAVELSAVAALVAVAGYFF 108

[Close]

BLAST of Sed0017943 vs. ExPASy TrEMBL
Match: A0A1S4DVD7 (classical arabinogalactan protein 11-like OS=Cucumis melo OX=3656 GN=LOC107990709 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 76/110 (69.09%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 1   MARQFVILAVVLFAVIGFACAAKPAESPKGSADNADVGAILAPGADHTVGNTDGAAAPGA 60
           MARQFV+ A+VLFAVIGFACAA PAE+PKGSAD+A  GA LAP AD+ +GNT+GA AP  
Sbjct: 1   MARQFVVFALVLFAVIGFACAASPAEAPKGSADSAGAGATLAPAADNAIGNTEGADAPAG 60

Query: 61  GDAVVEGPVGEPGAEGATGSAPAESPHGGASAVKFPAVAAVAAVAGFFFF 111
            + VVE PVG PG+  A G  PA +P  GASA+KF AVAAVAAVAGFFFF
Sbjct: 61  SNEVVEAPVGGPGS-AAAGVVPAPAP-SGASALKFSAVAAVAAVAGFFFF 108

[Close]

BLAST of Sed0017943 vs. ExPASy TrEMBL
Match: A0A6J1DFK4 (anther-specific protein BCP1 OS=Momordica charantia OX=3673 GN=LOC111019987 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.5e-24
Identity = 75/113 (66.37%), Postives = 85/113 (75.22%), Query Frame = 0


Query: 1   MARQFVILAVVLFAVIGFACAAKPAESPKGSADN--ADVGAILAPGADHTVGNTDG-AAA 60
           MARQFV  A+VLFAV+GFACAA PAE PK +A++  AD GA  APGAD+ +GNTDG AAA
Sbjct: 1   MARQFVAFALVLFAVVGFACAASPAEPPKAAANSTAADAGAAAAPGADNEIGNTDGAAAA 60

Query: 61  PGAGDAVVEGPVGEPGAEGATGSAPAESPHGGASAVKFPAVAAVAAVAGFFFF 111
           PGAG+ +VEGPVG PGA       PAESP  GA AVK  AVA VAA+AGFF F
Sbjct: 61  PGAGEDIVEGPVGGPGAAAGGDLVPAESPKSGAEAVKISAVAGVAAIAGFFCF 113

[Close]

BLAST of Sed0017943 vs. ExPASy TrEMBL
Match: A0A6J1HCZ7 (anther-specific protein BCP1-like OS=Cucurbita moschata OX=3662 GN=LOC111462951 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 70/109 (64.22%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MARQFVILAVVLFAVIGFACAAKPAESPKGSADNADVGAILAPGADHTVGNTDGAAAPGA 60
           MARQFV+LA+VLFA++GFA AA P+ESPKGSA+N DVG +LAPGAD  +GNTDG  A   
Sbjct: 1   MARQFVVLALVLFAIVGFATAASPSESPKGSANNTDVGDLLAPGADKEIGNTDGGDATNG 60

Query: 61  GDAVVEGPVGEPGAEGATGSAPAESPHGGASAVKFPAVAAVAAVAGFFF 110
            D VVEGP+G PG  G   S PAE+P  GASAV+F   +A+ AVAGFFF
Sbjct: 61  SDDVVEGPIGGPGVPGGE-SVPAEAPKSGASAVEF---SALVAVAGFFF 105

[Close]

BLAST of Sed0017943 vs. ExPASy TrEMBL
Match: A0A0A0LQR1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349700 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 73/110 (66.36%), Postives = 84/110 (76.36%), Query Frame = 0


Query: 1   MARQFVILAVVLFAVIGFACAAKPAESPKGSADNADVGAILAPGADHTVGNTDGAAAPGA 60
           MARQFV+ A+VLFAVIGF CAA PAE+PKGSAD A VGA LAPGA++ +GNT+GA AP  
Sbjct: 1   MARQFVVFALVLFAVIGFTCAATPAEAPKGSADTAGVGAQLAPGAENEIGNTEGADAPAG 60

Query: 61  GDAVVEGPVGEPGAEGATGSAPAESPHGGASAVKFPAVAAVAAVAGFFFF 111
            + VVE PVG PGA  A G  PA +P   ASA++F A AAV AVAGFFFF
Sbjct: 61  SEDVVEAPVGGPGAT-AGGFVPAPAP-SAASALEFSAAAAVTAVAGFFFF 108

The following BLAST results are available for this feature:

BLAST of Sed0017943 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885796.1	4.2e-26	70.91	outer membrane protein H.8-like [Benincasa hispida]	[more]
XP_022997549.1	7.9e-25	66.06	anther-specific protein BCP1-like [Cucurbita maxima]	[more]
XP_016899951.1	2.3e-24	69.09	PREDICTED: classical arabinogalactan protein 11-like [Cucumis melo]	[more]
XP_022152212.1	1.1e-23	66.37	anther-specific protein BCP1 [Momordica charantia]	[more]
XP_022962552.1	2.2e-22	64.22	anther-specific protein BCP1-like [Cucurbita moschata]	[more]

BLAST of Sed0017943 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0017943 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KBR3	3.8e-25	66.06	anther-specific protein BCP1-like OS=Cucurbita maxima OX=3661 GN=LOC111492442 PE...	[more]
A0A1S4DVD7	1.1e-24	69.09	classical arabinogalactan protein 11-like OS=Cucumis melo OX=3656 GN=LOC10799070...	[more]
A0A6J1DFK4	5.5e-24	66.37	anther-specific protein BCP1 OS=Momordica charantia OX=3673 GN=LOC111019987 PE=4...	[more]
A0A6J1HCZ7	1.0e-22	64.22	anther-specific protein BCP1-like OS=Cucurbita moschata OX=3662 GN=LOC111462951 ...	[more]
A0A0A0LQR1	1.8e-22	66.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349700 PE=4 SV=1	[more]

BLAST of Sed0017943 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..89
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..20 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017943.1	Sed0017943.1	mRNA