Sed0017940 (gene) Chayote v1

Overview


Name	Sed0017940
Type	gene
Organism	Sechium edule (Chayote v1)
Description	WPP domain-associated protein
Location	LG06: 44508845 .. 44509815 (-)
RNA-Seq Expression	Sed0017940
Synteny	Sed0017940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCATTCTTTGGATCCACTTCCTCAAGCCATGGTTTCCCTGCGACAAAATGAATCACTTTATAAGAAGGCATTCGTCAGAAGATGCCAAAATCTCAGAAAAGCTGAACATGAGGTTCTATTCTTCTTTTTTTTTTTGTATATACGAATGAATGTTCAAGTCAGCTTACACACATCTCGAGTACTGTTTTTAAAGAATAGACAACTCATCTAACCTTGAAATATTTAGATATCAAGGAAACCCGCAATAAATTAATGCCTAAATTGATGGCCGCCATGGATTGAATTTATAATCTTTTCATTCTCTAAGTTCCTCTTGATCACTAGGCCTATCTATGATAGTTAGAGGTCAAATTTAAAATCTCTCATTAAGGGTAGATATTTCCCACTTTGTAACATTTTGTCACCCCTAGCTTCAAAGACACATCAAAGTGACTGCAATAATCGAGGTGCGTGCAAGCTGACCTGGAATATAACAGATATATATACATATATATAAAGACACATTAGAGTGATGAAATCAGAGAACTACAATATAAGCCAATTAATTAGAGATATCTGGACCCTCCCATTCTCATGATATCAATCAAGCCTTAGGTTATTACCTAAAATATTATGCACTTTCTTTCATACTCACTCCCTCTATTTGTAACATCCAATCACAGAGTCTTTTTATCTGATATTCATTAGGTGGATCTTCTAGGAGATCAAGTGGACATACTTCTTAGCTTGATTGAGAAGATGTACTTTATTCTGAATCAACATTCACCAGTTTTGCAGCAACATTTTGATGTAAATTTTTGTGACATTCTCACAGCAATTAACTTGAATTATTTTATTTCTTTATTTTTTATTTTGTCTCTCTTAATGTCTCTGTAGGTCTCAGAAGTTCTCAGGTTGATCAAAAACGGAGTAGCAGAAATCGTTTGTACACCGCCTGAAAAAATAAATACAAGCACTAATGTTTAA

mRNA sequence

ATGAAGCATTCTTTGGATCCACTTCCTCAAGCCATGGTTTCCCTGCGACAAAATGAATCACTTTATAAGAAGGCATTCGTCAGAAGATGCCAAAATCTCAGAAAAGCTGAACATGAGGTTCTATTCTTCTTTTTTTTTTTGTATATACGAATGAATGTTCAAGTGGATCTTCTAGGAGATCAAGTGGACATACTTCTTAGCTTGATTGAGAAGATGTACTTTATTCTGAATCAACATTCACCAGTTTTGCAGCAACATTTTGATGTCTCAGAAGTTCTCAGGTTGATCAAAAACGGAGTAGCAGAAATCGTTTGTACACCGCCTGAAAAAATAAATACAAGCACTAATGTTTAA

Coding sequence (CDS)

ATGAAGCATTCTTTGGATCCACTTCCTCAAGCCATGGTTTCCCTGCGACAAAATGAATCACTTTATAAGAAGGCATTCGTCAGAAGATGCCAAAATCTCAGAAAAGCTGAACATGAGGTTCTATTCTTCTTTTTTTTTTTGTATATACGAATGAATGTTCAAGTGGATCTTCTAGGAGATCAAGTGGACATACTTCTTAGCTTGATTGAGAAGATGTACTTTATTCTGAATCAACATTCACCAGTTTTGCAGCAACATTTTGATGTCTCAGAAGTTCTCAGGTTGATCAAAAACGGAGTAGCAGAAATCGTTTGTACACCGCCTGAAAAAATAAATACAAGCACTAATGTTTAA

Protein sequence

MKHSLDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLFFFFFLYIRMNVQVDLLGDQVDILLSLIEKMYFILNQHSPVLQQHFDVSEVLRLIKNGVAEIVCTPPEKINTSTNV

Homology

[Close]

BLAST of Sed0017940 vs. NCBI nr
Match: KGN52275.1 (hypothetical protein Csa_008323 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-32
Identity = 82/124 (66.13%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 1   MKHSLDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLF-------FFFFLYIRMNV 60
           MKH+LDPLPQ M SL++N+SLYKKAF+RRCQNLRKAE+EVLF        F  LY     
Sbjct: 1   MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLY----S 60

Query: 61  QVDLLGDQVDILLSLIEKMYFILNQHSPVLQQHFDVSEVLRLIKNGVAEIVCTPPEKINT 118
           QVD+LGDQVDILLSLIEK+Y ILNQ SP LQQ+FDVSE+LR I   V  I CTPP K++T
Sbjct: 61  QVDILGDQVDILLSLIEKIYSILNQQSPALQQYFDVSEILRSIAEEVPVIACTPPVKLDT 120

[Close]

BLAST of Sed0017940 vs. NCBI nr
Match: KAA0034726.1 (WPP domain-associated protein isoform X2 [Cucumis melo var. makuwa] >TYK09279.1 WPP domain-associated protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-29
Identity = 76/118 (64.41%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 1   MKHSLDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLFFFFFLYIRMNVQVDLLGD 60
           MKH+LDPLPQAM SL++N+SLYKKAF+RRCQNLRKAE+E               VD+LGD
Sbjct: 585 MKHTLDPLPQAMASLQENKSLYKKAFIRRCQNLRKAENE---------------VDILGD 644

Query: 61  QVDILLSLIEKMYFILNQHSPVLQQHFD-----VSEVLRLIKNGVAEIVCTPPEKINT 114
           QVDILLSLIEK+Y ILNQ SP LQQ+FD     VSE+LR I+  V  IVCTPPEK++T
Sbjct: 645 QVDILLSLIEKIYSILNQQSPALQQYFDVISLNVSEILRSIEEEVPVIVCTPPEKLDT 687

[Close]

BLAST of Sed0017940 vs. NCBI nr
Match: KAG7031963.1 (WPP domain-associated protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.4 bits (350), Expect = 1.9e-29
Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MKHSLDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLFFFFFLYIRMNVQVDLLGD 60
           MKH+L PLPQ M SLR++ESLYKKAF+RRCQNLRKAE+E               VDLLGD
Sbjct: 860 MKHTLYPLPQVMASLRESESLYKKAFIRRCQNLRKAENE---------------VDLLGD 919

Query: 61  QVDILLSLIEKMYFILNQHSPVLQQHFDVSEVLRLIKNGVAEIVCTPPEKINTSTNV 118
           QVDILL LIEK+Y ILNQ SPVLQQ+ DVSE+LRLIK  VA ++ TPP+K++TS++V
Sbjct: 920 QVDILLRLIEKVYLILNQQSPVLQQYSDVSEILRLIKEQVA-VLSTPPKKLDTSSDV 960

[Close]

BLAST of Sed0017940 vs. NCBI nr
Match: XP_022985013.1 (uncharacterized protein LOC111483104 [Cucurbita maxima])

HSP 1 Score: 139.4 bits (350), Expect = 1.9e-29
Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MKHSLDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLFFFFFLYIRMNVQVDLLGD 60
           MKH+L PLPQ M SLR++ESLYKKAF+RRCQNLRKAE+E               VDLLGD
Sbjct: 867 MKHTLYPLPQVMASLRESESLYKKAFIRRCQNLRKAENE---------------VDLLGD 926

Query: 61  QVDILLSLIEKMYFILNQHSPVLQQHFDVSEVLRLIKNGVAEIVCTPPEKINTSTNV 118
           QVDILL LIEK+Y ILNQ SPVLQQ+ DVSE+LRLIK  VA ++ TPP+K++TS++V
Sbjct: 927 QVDILLRLIEKVYLILNQQSPVLQQYSDVSEILRLIKEQVA-VLSTPPKKLDTSSDV 967

[Close]

BLAST of Sed0017940 vs. NCBI nr
Match: XP_022956940.1 (uncharacterized protein LOC111458475 [Cucurbita moschata])

HSP 1 Score: 138.7 bits (348), Expect = 3.3e-29
Identity = 76/117 (64.96%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MKHSLDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLFFFFFLYIRMNVQVDLLGD 60
           MKH+L PLPQ M SLR++ESLYKKAF+RRCQNLRKAE+E               VDLLGD
Sbjct: 860 MKHTLYPLPQVMASLRESESLYKKAFIRRCQNLRKAENE---------------VDLLGD 919

Query: 61  QVDILLSLIEKMYFILNQHSPVLQQHFDVSEVLRLIKNGVAEIVCTPPEKINTSTNV 118
           QVDILL LIEK+Y ILNQ SPVLQQ+ DVSE+LRLIK  VA +  TPP+K++TS++V
Sbjct: 920 QVDILLRLIEKVYLILNQQSPVLQQYSDVSEILRLIKEQVA-VFSTPPKKLDTSSDV 960

[Close]

BLAST of Sed0017940 vs. ExPASy Swiss-Prot
Match: O64584 (WPP domain-associated protein OS=Arabidopsis thaliana OX=3702 GN=WAP PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 1   MKHSLDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLFFFFFLYIRMNVQVDLLGD 60
           M+  L  L   +  ++   S YK+   ++C +L+KAE E               VDLLGD
Sbjct: 732 MQSQLSDLSHQINEVKGKASTYKQRLEKKCCDLKKAEAE---------------VDLLGD 791

Query: 61  QVDILLSLIEKMYFILNQHSPVLQQHFDVSEVLRLIK 98
           +V+ LL L+EK+Y  L+ +SP+L+ +  + E+LRL++
Sbjct: 792 EVETLLDLLEKIYIALDHYSPILKHYPGIIEILRLVR 813

[Close]

BLAST of Sed0017940 vs. ExPASy Swiss-Prot
Match: Q5BQN5 (WPP domain-associated protein (Fragment) OS=Solanum lycopersicum OX=4081 GN=WAP PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.3e-07
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 5   LDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLFFFFFLYIRMNVQVDLLGDQVDI 64
           +D L +    LR+   LY++   +RC +L+ AE E               VDLLGD+VD 
Sbjct: 761 MDCLVKKANLLRRTTLLYQQRLEKRCSDLKLAEAE---------------VDLLGDEVDT 820

Query: 65  LLSLIEKMYFILNQHSPVLQQH 87
           LLSL+EK+Y  L+ +SPVLQ +
Sbjct: 821 LLSLVEKIYIALDHYSPVLQHY 827

[Close]

BLAST of Sed0017940 vs. ExPASy TrEMBL
Match: A0A0A0KRK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623390 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.9e-33
Identity = 82/124 (66.13%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 1   MKHSLDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLF-------FFFFLYIRMNV 60
           MKH+LDPLPQ M SL++N+SLYKKAF+RRCQNLRKAE+EVLF        F  LY     
Sbjct: 1   MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLY----S 60

Query: 61  QVDLLGDQVDILLSLIEKMYFILNQHSPVLQQHFDVSEVLRLIKNGVAEIVCTPPEKINT 118
           QVD+LGDQVDILLSLIEK+Y ILNQ SP LQQ+FDVSE+LR I   V  I CTPP K++T
Sbjct: 61  QVDILGDQVDILLSLIEKIYSILNQQSPALQQYFDVSEILRSIAEEVPVIACTPPVKLDT 120

[Close]

BLAST of Sed0017940 vs. ExPASy TrEMBL
Match: A0A5D3CG51 (WPP domain-associated protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002740 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.5e-30
Identity = 76/118 (64.41%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 1   MKHSLDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLFFFFFLYIRMNVQVDLLGD 60
           MKH+LDPLPQAM SL++N+SLYKKAF+RRCQNLRKAE+E               VD+LGD
Sbjct: 585 MKHTLDPLPQAMASLQENKSLYKKAFIRRCQNLRKAENE---------------VDILGD 644

Query: 61  QVDILLSLIEKMYFILNQHSPVLQQHFD-----VSEVLRLIKNGVAEIVCTPPEKINT 114
           QVDILLSLIEK+Y ILNQ SP LQQ+FD     VSE+LR I+  V  IVCTPPEK++T
Sbjct: 645 QVDILLSLIEKIYSILNQQSPALQQYFDVISLNVSEILRSIEEEVPVIVCTPPEKLDT 687

[Close]

BLAST of Sed0017940 vs. ExPASy TrEMBL
Match: A0A6J1JCB6 (uncharacterized protein LOC111483104 OS=Cucurbita maxima OX=3661 GN=LOC111483104 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 9.4e-30
Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MKHSLDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLFFFFFLYIRMNVQVDLLGD 60
           MKH+L PLPQ M SLR++ESLYKKAF+RRCQNLRKAE+E               VDLLGD
Sbjct: 867 MKHTLYPLPQVMASLRESESLYKKAFIRRCQNLRKAENE---------------VDLLGD 926

Query: 61  QVDILLSLIEKMYFILNQHSPVLQQHFDVSEVLRLIKNGVAEIVCTPPEKINTSTNV 118
           QVDILL LIEK+Y ILNQ SPVLQQ+ DVSE+LRLIK  VA ++ TPP+K++TS++V
Sbjct: 927 QVDILLRLIEKVYLILNQQSPVLQQYSDVSEILRLIKEQVA-VLSTPPKKLDTSSDV 967

[Close]

BLAST of Sed0017940 vs. ExPASy TrEMBL
Match: A0A6J1GZ55 (uncharacterized protein LOC111458475 OS=Cucurbita moschata OX=3662 GN=LOC111458475 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.6e-29
Identity = 76/117 (64.96%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MKHSLDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLFFFFFLYIRMNVQVDLLGD 60
           MKH+L PLPQ M SLR++ESLYKKAF+RRCQNLRKAE+E               VDLLGD
Sbjct: 860 MKHTLYPLPQVMASLRESESLYKKAFIRRCQNLRKAENE---------------VDLLGD 919

Query: 61  QVDILLSLIEKMYFILNQHSPVLQQHFDVSEVLRLIKNGVAEIVCTPPEKINTSTNV 118
           QVDILL LIEK+Y ILNQ SPVLQQ+ DVSE+LRLIK  VA +  TPP+K++TS++V
Sbjct: 920 QVDILLRLIEKVYLILNQQSPVLQQYSDVSEILRLIKEQVA-VFSTPPKKLDTSSDV 960

[Close]

BLAST of Sed0017940 vs. ExPASy TrEMBL
Match: A0A5C7GXR8 (Thioredoxin domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_025419 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.3e-19
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 1   MKHSLDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLFFFFFLYIRMNVQVDLLGD 60
           MKH LD L + + S+++ E LYK+AF+RRCQNL+KAE E               VDLLGD
Sbjct: 818 MKHQLDSLIELVFSIQKRELLYKEAFMRRCQNLQKAETE---------------VDLLGD 877

Query: 61  QVDILLSLIEKMYFILNQHSPVLQQHFDVSEVLRLIKNGVAEIVCTPP 109
           QV +LL L+EK+Y  L+Q+SP+LQQHF+VSE+L+LI+  + E    PP
Sbjct: 878 QVGVLLGLLEKIYMTLHQYSPLLQQHFEVSEILKLIQTELTEEPSNPP 910

[Close]

BLAST of Sed0017940 vs. TAIR 10
Match: AT5G14990.1 (BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G34730.1); Has 8284 Blast hits to 6001 proteins in 578 species: Archae - 107; Bacteria - 678; Metazoa - 3983; Fungi - 607; Plants - 315; Viruses - 16; Other Eukaryotes - 2578 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-10
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 5   LDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLFFFFFLYIRMNVQVDLLGDQVDI 64
           +D     +  LRQ ES+Y+ AFV R +NLRKAE E               VDLLGDQVD 
Sbjct: 581 IDSTMDFIAELRQRESVYRTAFVLRSENLRKAETE---------------VDLLGDQVDS 640

Query: 65  LLSLIEKMYFILNQHSPVLQQHFDVSEVLRLIK 98
           L+ L++K  +  +QH  +L  + D+ E+ ++IK
Sbjct: 641 LVKLLQKTLWTFHQHPLLLCNNSDILEISKMIK 658

[Close]

BLAST of Sed0017940 vs. TAIR 10
Match: AT2G34730.1 (myosin heavy chain-related )

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-09
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 1   MKHSLDPLPQAMVSLRQNESLYKKAFVRRCQNLRKAEHEVLFFFFFLYIRMNVQVDLLGD 60
           M+  L  L   +  ++   S YK+   ++C +L+KAE E               VDLLGD
Sbjct: 732 MQSQLSDLSHQINEVKGKASTYKQRLEKKCCDLKKAEAE---------------VDLLGD 791

Query: 61  QVDILLSLIEKMYFILNQHSPVLQQHFDVSEVLRLIK 98
           +V+ LL L+EK+Y  L+ +SP+L+ +  + E+LRL++
Sbjct: 792 EVETLLDLLEKIYIALDHYSPILKHYPGIIEILRLVR 813

The following BLAST results are available for this feature:

BLAST of Sed0017940 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52275.1	1.4e-32	66.13	hypothetical protein Csa_008323 [Cucumis sativus]	[more]
KAA0034726.1	1.1e-29	64.41	WPP domain-associated protein isoform X2 [Cucumis melo var. makuwa] >TYK09279.1 ...	[more]
KAG7031963.1	1.9e-29	64.96	WPP domain-associated protein, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_022985013.1	1.9e-29	64.96	uncharacterized protein LOC111483104 [Cucurbita maxima]	[more]
XP_022956940.1	3.3e-29	64.96	uncharacterized protein LOC111458475 [Cucurbita moschata]	[more]

BLAST of Sed0017940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64584	2.6e-08	34.02	WPP domain-associated protein OS=Arabidopsis thaliana OX=3702 GN=WAP PE=1 SV=2	[more]
Q5BQN5	6.3e-07	40.24	WPP domain-associated protein (Fragment) OS=Solanum lycopersicum OX=4081 GN=WAP ...	[more]

BLAST of Sed0017940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRK0	6.9e-33	66.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623390 PE=4 SV=1	[more]
A0A5D3CG51	5.5e-30	64.41	WPP domain-associated protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1JCB6	9.4e-30	64.96	uncharacterized protein LOC111483104 OS=Cucurbita maxima OX=3661 GN=LOC111483104...	[more]
A0A6J1GZ55	1.6e-29	64.96	uncharacterized protein LOC111458475 OS=Cucurbita moschata OX=3662 GN=LOC1114584...	[more]
A0A5C7GXR8	3.3e-19	50.93	Thioredoxin domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_025...	[more]

BLAST of Sed0017940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14990.1	1.6e-10	39.78	BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2...	[more]
AT2G34730.1	1.8e-09	34.02	myosin heavy chain-related	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037490	WPP domain-associated protein	PANTHER	PTHR33883	WPP DOMAIN-ASSOCIATED PROTEIN	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017940.1	Sed0017940.1	mRNA