Sed0017892 (gene) Chayote v1

Overview


Name	Sed0017892
Type	gene
Organism	Sechium edule (Chayote v1)
Description	F-box protein
Location	LG08: 5720407 .. 5721217 (+)
RNA-Seq Expression	Sed0017892
Synteny	Sed0017892

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAGAAACCCTAAAAGAAAACCTCACAACTCTCAAATGGCGGCTGTCGTTGCAAATTTGGCGGAAGATGTGATGATCGAGATTTTATCGATGCTCCCGGCAAAGTCTCTGCTCCGATTCAAATCCGTTTGCAAATCCTGGTACTCTCTAATTAACGATCCTAAATTCATAAGAAAACATTTCTCTCATGCTTCTCAACACCAACACGAAGATGCACTGAAAGCGAAAATACGATGTACACACATTAAACATTTGGGAAATGTACAAAGATAATGAATCTGGGGGATTTTCATGGTCAAGGCTATTTACCATTAATGATACTGTTTTTTAAATCAGCCAGCCATTGTTGTTTGTGAACTCCGATGAACTTCTAATAGAAGTTGAGGACGGATCAGATTTTGGGGGACTTTTTATGGAATCGAATGAAAGACGAGTGATGGATGAATCCGTAGAACCTAAAGAAGAACTACTTATTCTGTACAATATTAAGACTCAACACTTCAAACCGCTTTCAGTGAAAGGAGATCCATCAATGTTCCAAGCTACTTTCTTTGTTAAGAGTTTGATTTCGGTTCAAGGAGGAACCATGGATTTTAGTATTAATTAAGGCCTCCTTTAATAATCATTTTGTTTTCGTTTCTTGTTTATGAAATTTAAGTCTACGACAACTACCTTATTATACTTTGTTCCTTATTTGGATATTTACCTCTTATCTATACTTTAATAAACGAAATCAAAATTTGGAAACAAAAAAAATAGCTTCTTCACCTACTTTCTTAAGGAATATGGATACATTGTAGGAAAGATGGAG

mRNA sequence

TTGAGAAACCCTAAAAGAAAACCTCACAACTCTCAAATGGCGGCTGTCGTTGCAAATTTGGCGGAAGATGTGATGATCGAGATTTTATCGATGCTCCCGGCAAAGTCTCTGCTCCGATTCAAATCCGTTTGCAAATCCTGGTACTCTCTAATTAACGATCCTAAATTCATAAGAAAACATTTCTCTCATGCTTCTCAACACCAACACGAAGATGCACTGAAAGCGAAAATACGATGTACACACATTAAACATTTGGGAAATGTACAAAGATAATGAATCTGGGGGATTTTCATGGTCAAGGCTATTTACCATTAATGATACTGTTTTTTAAATCAGCCAGCCATTGTTGTTTGTGAACTCCGATGAACTTCTAATAGAAGTTGAGGACGGATCAGATTTTGGGGGACTTTTTATGGAATCGAATGAAAGACGAGTGATGGATGAATCCGTAGAACCTAAAGAAGAACTACTTATTCTGTACAATATTAAGACTCAACACTTCAAACCGCTTTCAGTGAAAGGAGATCCATCAATGTTCCAAGCTACTTTCTTTGTTAAGAGTTTGATTTCGGTTCAAGGAGGAACCATGGATTTTAGTATTAATTAAGGCCTCCTTTAATAATCATTTTGTTTTCGTTTCTTGTTTATGAAATTTAAGTCTACGACAACTACCTTATTATACTTTGTTCCTTATTTGGATATTTACCTCTTATCTATACTTTAATAAACGAAATCAAAATTTGGAAACAAAAAAAATAGCTTCTTCACCTACTTTCTTAAGGAATATGGATACATTGTAGGAAAGATGGAG

Coding sequence (CDS)

ATGGCGGCTGTCGTTGCAAATTTGGCGGAAGATGTGATGATCGAGATTTTATCGATGCTCCCGGCAAAGTCTCTGCTCCGATTCAAATCCGTTTGCAAATCCTGGTACTCTCTAATTAACGATCCTAAATTCATAAGAAAACATTTCTCTCATGCTTCTCAACACCAACACGAAGATGCACTGAAAGCGAAAATACGATGTACACACATTAAACATTTGGGAAATGTACAAAGATAA

Protein sequence

MAAVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHEDALKAKIRCTHIKHLGNVQR

Homology

[Close]

BLAST of Sed0017892 vs. NCBI nr
Match: XP_038906036.1 (F-box protein CPR1-like [Benincasa hispida])

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 3  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQ 57
          A + NL E+VMIEILS LP +SLLRFK V KSWY+LINDPKF  KHFS++ QH+
Sbjct: 2  ASLGNLPEEVMIEILSRLPPESLLRFKCVRKSWYALINDPKFKAKHFSNSLQHK 55

[Close]

BLAST of Sed0017892 vs. NCBI nr
Match: XP_022983805.1 (F-box protein CPR1-like [Cucurbita maxima])

HSP 1 Score: 70.5 bits (171), Expect = 7.4e-09
Identity = 34/55 (61.82%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 3  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH 58
          A + +L E+VMIEILS LP +SLLRFK+V KSWY+LI++PKF  KHFS++ +H+H
Sbjct: 2  AALGHLPEEVMIEILSRLPPESLLRFKTVRKSWYALIDNPKFATKHFSNSLKHKH 56

[Close]

BLAST of Sed0017892 vs. NCBI nr
Match: XP_011652842.1 (F-box protein CPR1-like [Cucumis sativus] >KAE8651027.1 hypothetical protein Csa_001888 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 7.4e-09
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 8  LAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH 58
          +  DV+I ILS LP +SLLRFKSVCK+WY+LINDPKF+ KH   +S H+H
Sbjct: 3  VVSDVVIHILSKLPPESLLRFKSVCKTWYALINDPKFVTKHLLDSSPHKH 52

[Close]

BLAST of Sed0017892 vs. NCBI nr
Match: KAF9602715.1 (hypothetical protein IFM89_030603 [Coptis chinensis])

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 32/57 (56.14%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 5  VANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHEDAL 62
          ++NL E+++  ILS LP K LL+FKSVCKSWYSLINDP FI+ H  HA+++ + +A+
Sbjct: 1  MSNLPEEMITNILSRLPVKPLLQFKSVCKSWYSLINDPIFIKMHLKHATRNNNLNAM 57

[Close]

BLAST of Sed0017892 vs. NCBI nr
Match: XP_022935692.1 (F-box protein CPR30-like [Cucurbita moschata])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 3  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH 58
          A + +L E+VMIEILS LP +SLLRFK+V KSWY+LIN+PKF  KHFS++ + +H
Sbjct: 2  AALGHLPEEVMIEILSRLPPESLLRFKTVRKSWYALINNPKFATKHFSNSLKQKH 56

[Close]

BLAST of Sed0017892 vs. ExPASy Swiss-Prot
Match: Q9SAB5 (Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana OX=3702 GN=At1g11620 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.5e-07
Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 7  NLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHE 59
          +L+ D++ EILS +PA+SL+R +S CK W +LI +P+F+ KH SH    + +
Sbjct: 5  DLSSDLVEEILSRVPARSLVRLRSTCKQWEALIAEPRFVNKHLSHMRYREQQ 56

[Close]

BLAST of Sed0017892 vs. ExPASy Swiss-Prot
Match: Q9LUP5 (F-box/kelch-repeat protein At3g17530 OS=Arabidopsis thaliana OX=3702 GN=At3g17530 PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 7.2e-07
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 4  VVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHA 53
          ++++L  D+  EILS +PAKSL ++K+ CK WY+L  DP F++K+F  A
Sbjct: 2  MISDLPHDLESEILSRVPAKSLAKWKTTCKRWYALFRDPSFVKKNFDKA 50

[Close]

BLAST of Sed0017892 vs. ExPASy Swiss-Prot
Match: Q9LUU4 (Putative F-box protein At3g17270 OS=Arabidopsis thaliana OX=3702 GN=At3g17270 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.4e-07
Identity = 22/54 (40.74%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1  MAAVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQ 55
          M   + NL +++  EILS +PAKSL ++K++CK WY+L  DP+F++K+   +++
Sbjct: 1  MMTTIPNLPDELESEILSRVPAKSLAKWKTICKRWYALFRDPRFVKKNLCKSAR 54

[Close]

BLAST of Sed0017892 vs. ExPASy Swiss-Prot
Match: Q9LUP9 (Putative F-box protein At3g17480 OS=Arabidopsis thaliana OX=3702 GN=At3g17480 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 8  LAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHEDALKAKIR 67
          L ED++ +ILS +PA SL+R +S CK W +++ND +FI+KHF  A + ++ D L   +R
Sbjct: 12 LTEDLVEDILSRVPATSLVRLRSTCKQWNAILNDRRFIKKHFDTA-EKEYLDMLLRSLR 69

[Close]

BLAST of Sed0017892 vs. ExPASy Swiss-Prot
Match: Q9CAE7 (Putative F-box protein At3g10430 OS=Arabidopsis thaliana OX=3702 GN=At3g10430 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.6e-06
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 6  ANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLI-NDPKFIRKHFSHASQ 55
          ++L  D+++EIL   PA+SLLRFKS CK WY LI ND +F+ KH   +++
Sbjct: 3  SSLPFDLILEILQRTPAESLLRFKSTCKKWYELISNDKRFMYKHLDKSTK 52

[Close]

BLAST of Sed0017892 vs. ExPASy TrEMBL
Match: A0A6J1J6Y5 (F-box protein CPR1-like OS=Cucurbita maxima OX=3661 GN=LOC111482312 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-09
Identity = 34/55 (61.82%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 3  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH 58
          A + +L E+VMIEILS LP +SLLRFK+V KSWY+LI++PKF  KHFS++ +H+H
Sbjct: 2  AALGHLPEEVMIEILSRLPPESLLRFKTVRKSWYALIDNPKFATKHFSNSLKHKH 56

[Close]

BLAST of Sed0017892 vs. ExPASy TrEMBL
Match: A0A5D3DPH7 (F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003060 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.0e-09
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 8  LAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH 58
          +  DV+I+ILS LP +SLLRFKSVCKSWY LINDPKF+ KH   +  H+H
Sbjct: 2  VVSDVVIQILSKLPPESLLRFKSVCKSWYVLINDPKFVAKHLLDSFSHKH 51

[Close]

BLAST of Sed0017892 vs. ExPASy TrEMBL
Match: A0A5D3DPY4 (F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007940 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.0e-09
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 3  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH 58
          A + NL + V+IEILS LP +SLLRFK V KSWY+L NDPKF  KHFS + QH+H
Sbjct: 2  ASLGNLPDGVIIEILSRLPPESLLRFKCVRKSWYALFNDPKFKEKHFSTSLQHKH 56

[Close]

BLAST of Sed0017892 vs. ExPASy TrEMBL
Match: A0A2Z7AC90 (F-box domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_12076 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.0e-09
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 7  NLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHEDALKAK 65
          NL+EDV++EILS LP KSL+RF+ VCKSWY L+ DP FI KH+ + S  + +  L  K
Sbjct: 2  NLSEDVIVEILSKLPVKSLVRFRCVCKSWYVLVRDPTFITKHYKNLSSKEGDHLLVIK 59

[Close]

BLAST of Sed0017892 vs. ExPASy TrEMBL
Match: A0A6J1F6B1 (F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111442474 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.0e-09
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 3  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH 58
          A + +L E+VMIEILS LP +SLLRFK+V KSWY+LIN+PKF  KHFS++ + +H
Sbjct: 2  AALGHLPEEVMIEILSRLPPESLLRFKTVRKSWYALINNPKFATKHFSNSLKQKH 56

[Close]

BLAST of Sed0017892 vs. TAIR 10
Match: AT2G41473.1 (F-box family protein )

HSP 1 Score: 58.2 bits (139), Expect = 3.5e-09
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 5  VANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHA 53
          +A LA D++IEIL+ +P K LLRF+ VCKSW SL  D +FIR H +HA
Sbjct: 1  MAELAFDLVIEILAKVPVKYLLRFRCVCKSWRSLFQDERFIRMHTTHA 48

[Close]

BLAST of Sed0017892 vs. TAIR 10
Match: AT1G11620.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-08
Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 7  NLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHE 59
          +L+ D++ EILS +PA+SL+R +S CK W +LI +P+F+ KH SH    + +
Sbjct: 5  DLSSDLVEEILSRVPARSLVRLRSTCKQWEALIAEPRFVNKHLSHMRYREQQ 56

[Close]

BLAST of Sed0017892 vs. TAIR 10
Match: AT3G17530.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 54.3 bits (129), Expect = 5.1e-08
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 4  VVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHA 53
          ++++L  D+  EILS +PAKSL ++K+ CK WY+L  DP F++K+F  A
Sbjct: 2  MISDLPHDLESEILSRVPAKSLAKWKTTCKRWYALFRDPSFVKKNFDKA 50

[Close]

BLAST of Sed0017892 vs. TAIR 10
Match: AT3G17270.1 (F-box family protein )

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-08
Identity = 21/50 (42.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 5  VANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQ 55
          + NL +++  EILS +PAKSL ++K++CK WY+L  DP+F++K+   +++
Sbjct: 4  IPNLPDELESEILSRVPAKSLAKWKTICKRWYALFRDPRFVKKNLCKSAR 53

[Close]

BLAST of Sed0017892 vs. TAIR 10
Match: AT3G17480.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-08
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 8  LAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHEDALKAKIR 67
          L ED++ +ILS +PA SL+R +S CK W +++ND +FI+KHF  A + ++ D L   +R
Sbjct: 11 LTEDLVEDILSRVPATSLVRLRSTCKQWNAILNDRRFIKKHFDTA-EKEYLDMLLRSLR 68

The following BLAST results are available for this feature:

BLAST of Sed0017892 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906036.1	1.5e-09	68.52	F-box protein CPR1-like [Benincasa hispida]	[more]
XP_022983805.1	7.4e-09	61.82	F-box protein CPR1-like [Cucurbita maxima]	[more]
XP_011652842.1	7.4e-09	64.00	F-box protein CPR1-like [Cucumis sativus] >KAE8651027.1 hypothetical protein Csa...	[more]
KAF9602715.1	1.3e-08	56.14	hypothetical protein IFM89_030603 [Coptis chinensis]	[more]
XP_022935692.1	1.6e-08	61.82	F-box protein CPR30-like [Cucurbita moschata]	[more]

BLAST of Sed0017892 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAB5	5.5e-07	44.23	Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana...	[more]
Q9LUP5	7.2e-07	46.94	F-box/kelch-repeat protein At3g17530 OS=Arabidopsis thaliana OX=3702 GN=At3g1753...	[more]
Q9LUU4	9.4e-07	40.74	Putative F-box protein At3g17270 OS=Arabidopsis thaliana OX=3702 GN=At3g17270 PE...	[more]
Q9LUP9	1.2e-06	44.07	Putative F-box protein At3g17480 OS=Arabidopsis thaliana OX=3702 GN=At3g17480 PE...	[more]
Q9CAE7	3.6e-06	50.00	Putative F-box protein At3g10430 OS=Arabidopsis thaliana OX=3702 GN=At3g10430 PE...	[more]

BLAST of Sed0017892 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J6Y5	3.6e-09	61.82	F-box protein CPR1-like OS=Cucurbita maxima OX=3661 GN=LOC111482312 PE=4 SV=1	[more]
A0A5D3DPH7	8.0e-09	64.00	F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3DPY4	8.0e-09	63.64	F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A2Z7AC90	8.0e-09	55.17	F-box domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_12...	[more]
A0A6J1F6B1	8.0e-09	61.82	F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111442474 PE=4 SV=1	[more]

BLAST of Sed0017892 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41473.1	3.5e-09	58.33	F-box family protein	[more]
AT1G11620.1	3.9e-08	44.23	F-box and associated interaction domains-containing protein	[more]
AT3G17530.1	5.1e-08	46.94	F-box and associated interaction domains-containing protein	[more]
AT3G17270.1	8.7e-08	42.00	F-box family protein	[more]
AT3G17480.1	8.7e-08	44.07	F-box and associated interaction domains-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 8..48 e-value: 1.9E-8 score: 44.1
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 7..49 e-value: 3.7E-11 score: 42.6
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 2..48 score: 11.00765
None	No IPR available	GENE3D	1.20.1280.50		coord: 2..72 e-value: 1.4E-12 score: 49.4
None	No IPR available	PANTHER	PTHR31111	BNAA05G37150D PROTEIN-RELATED	coord: 3..58
None	No IPR available	PANTHER	PTHR31111:SF22	BNAA05G37150D PROTEIN	coord: 3..58
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 7..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017892.1	Sed0017892.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding