Sed0017861 (gene) Chayote v1

Overview


Name	Sed0017861
Type	gene
Organism	Sechium edule (Chayote v1)
Description	serine/arginine-rich splicing factor SR45a
Location	LG10: 9207291 .. 9211084 (+)
RNA-Seq Expression	Sed0017861
Synteny	Sed0017861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAATCTCACAGCATAAAGTTCGTCTCCCCCCACATGACACATCGGTGAGTTGCGATTGGAGAGGCTGCCTTCAGAAACCCTAGAATTCCTGTTTTGTATCTTCGCTTTCTCTTTACCACTTGGTGGCCGACGTTCTCGTTCTGATCTCATTCTGCAAAATGGTTTGTTCTTTTTCTCATTTCTATGGATCTTTCTTCGTTCATCCTTGTTTTTTTGCTCGATTAAAGGAATAATAATCTATACGCTTCTGATTCTGCGCAGGATGATTCCCATCGCAAAAGGTCAGAAAAATGTTCTGTTGAAGTGATTCGTTTAATTTTGAGCAGTTCTTTCTCATGAGATGTCGATTCATTTAATTTTAACCCTCCATGAATGAGATAATTAGTCCACGCGTCTTGGATTTTTTTTAGGAGAATTTGTTCATCCGGAGATGTATTTAAGTTGGTTGATACAGGAGTTGAGCATTTTCTTGAGATCGTAGTAGTATTAGTAGGTTTGATTGTATAACATTGGAACCTAATTTTGGAAAAAAGTTTCAAGATCGTTCTGTGTTTTGTTTTGTTTTGCTTTGTTTGAGGTCGTGATAAAAGATTATGATGGCCAACTATTGTTTTATTAATGGAGTTTTAGAGTTTTGGGTGCTAAATTTCATAGTTCCTATACGTTTTTGAGTTGGGTCGACAGCTATTTTTATGATTTCGTGCAAATAATTTCTAGTGATTACACTTTGCCTTCTCTGTTCGTTTCCTTTTTCCCATTTGGGCATATCTATTTGTTGGGATTCAAATATTGTTCTGGTCAGTAATTTACACATTAAGGATTAATGGAAGCGTGGGTGTAAGAGATAATGTGTGTTTGCAATGTTATGAAATTTTTAAGTTTAACCACTAGTGCCATAGGTAACTAAGATGTGGTGGTCTCAATCTATATGGTAGCCACCTACTTAGGCTTAGGGTGTGTTTGGAACACCAGTTTGGCTATGATAGACAGAAGGTTATAATAAACGGTAGGTTATGATAAACGGTGGGTTATTATAAATCATGTTTGAGGAGCAAGTTATTATAACATGGATTATGATAAACGGTGTTCGAGGGGTTGGTTATGTAACAAAAAGTAATATATGTAAGGTTTAGATAAACGGGCACGTAGGTCTGGATAAATGGGCACGTAGGTTTAGGTAACCACTGTTTATAATAAACATCGGTTGAGTTATTATAACCAACCTGGCCGTTTACATAAACGGGGGCCCAAACACACCCATATAGTTTTCCTCCTTGATATTCAAATTTTCACATAGTATGTCTTGTGAGAATAGTCGAAGTGCACATAAATTGACCCAAACACTCACAGATATAAAAAAAAGTTATGGAACTTTGCTGTTTTAAATCTTAGAATGTTCCATTTCTTTAGGATATCCTAGTTGTAGTATTTCTAATGCCCGTAGGGCCGTAAATCCTTGGTGTTAGTACCATTTATATTTATACTTGATGCAGGCTCTCTCGATCCCCATCCCCCCTAAGAGCTCCTTCAAGGTCAAGATCTAGATCTAGGTCGCCATCTAGGCCGCGATCTAGACCCAGGTCAAGATCCAGATCATGGTCAAGGCCAAGGTCCCGAAGTCGTGGAAGGTTGGTTTTAATATTTCTTTATTCTGGGCATAAATGGAAAGTAAAAATTGCTTTTATGTTTGTGAACTTTAGTAGCTTAGAATCCTGTTCTGATGGTTAAACTCATTTCTGATTCAGATCAAGGTCCAGAAGTCGTGGGAGGTGTGTTTCTTCAGCTGGAACTCTGGACAAAAAATAACCTACAATAATTTCAGTACATAAATTGGGTCTATTGGATAATGCTTTTGTTGCATTATTTTGTATTTTGATTCTCGTTGGATAACATTTTTATCTTCTAGGGAGGAGAATGCCCATAACACTGGGAATACGCTGTATGTCACTGGTCTGTCTACAAGGGTCACCGAAAGAGACCTTGAAGAGCACTTTTCCAAGGAAGGCAAGGTTAACTTCTGAACCTTATTACTTGCAGTTGATTGCACAAATGTGTGAAAACAAATGATACACAACATAAAGCAAGATAGTATTTATTTATTGCATTTCTTTAATTTAAAAATGTGTATATTGTAAGTGAACGAATGTGTTTGTATTTCTTTAAAAAAACATTAAAAGGTCTAATCCAAAAAGAAAAACATTTAATGAAAATTAGGCAGATGTCAATGGCCTCAAGTTCAATATATTCATAATGTCTCATCGTATTGGAAAAAAGAGGGAAATTGGATTAGAGTTGATACCAAATGGTCAAAATTTATGCAATGGCTTGTTTTCTTGGTCATGGTGTAGTCAGTTTATTCTTTCTTTTGTAATGCTTCTAATAATTGCAGGTAGCTTCTTGTTTCCTTGTGGTTGAACCCCGAACACGGATTTCTCGTGGCTTTGCATTTGTTACGATGGACAATGCTGATGGTGCCAATCGGTGTGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACTGTGGAGAAGGTACTATTGATTATTCTGCTCTGTAAGCATTGAAGGATTTTGGTTGTTTTCTCTTTTTTTTCCCTTAACTTGGAGGTTTTCTGGTTATATTCAGAACAAGTTGTGTCAGCTATGTTGGCAGCAATCAAAGATGACGAGTTCATCCATGTCAACTTTTAGTGAAACAGCTTGGTCAATGATAAGCTTAAACAACAGATTTCAAATGGGCCCGATCAACTAACTTATCAACTATATTGCCCAACAACTTTTCTACATCAGCATTCACTTTCAACACAACTAACCAACGGACATTATCAAGAACTTTCTAAATCAGGCTTTATGGTATTTCATGCCTAGCATTCATGGGACACTAGTCAATTTCTCCCTAATCCTGATATCAAATGAATTAATTTTTGGTGGCCAGTTTCTCCCGTGAATCTTATGTATTGATGATGATACTCTTCCAACAATTTAAAAAACTAGTGTTTGCACAACGTGCCAATCTAAAAAGCTATAAACAAACAGACCATTTTTTGTGTAGATCTGACTGGGACTTGGTTACTAAAGTAATGAAATAACATATTTTTTTATCCTTTCAGTCCCGGAGGAAACGGCCAAGAACACCAACACCCGGACACTATTTAGGGCTGAAAAATGCACGAGACTCTGGTAAGCTAGTTATTTGCAATGATGGTTCCACTTATTTTGTGCTTTAAATTGCAATTTGCTTGAGCATTGGTTTTGTTTCTTGTTTTATTAGATTATCGTGGTGATCGAGGTGGTGATCGAGGTAGGTATCGTGGTGGCTCTTACCGTGATGACTATGGGTATCGTCGGTCTCCAAGACGCTCTCCTTATCGAGGGCCTCGAGAGTACTCTCCTCCCCCTTATGTTGGAAGATCAAGGCGGGATCACTCTAGGTCGCCTCCTTACTCTCCATATGGCAGCTCGGATAGGAGGTATCCTCGTGGCTCTAGGTGAGGTGAGGCTCCTTTTAATGGTCTTCTTGCGGTGCTTTTAAACATGACGATTGATGGTTGTGTGCTCGAACGTTTGATTTTGTACTCTTGTTAGCTGTAAGAAGTTCAATTGGCTGGATGTTATCTTGAGGTGTATGGATGTTCTGTGTTCCTGACTTGGTTAAGTGACAATATTATTTTAGACTTTTGTTTTTTGTTTTGTAATCTTTATAATCTTTTTCCTTTCTGTAACCACTATGGCTTATTTGACGAACGGTATTAACAGTAGTTTCCTGCCGCAACTAAGCATGGCA

mRNA sequence

AATTAATCTCACAGCATAAAGTTCGTCTCCCCCCACATGACACATCGGTGAGTTGCGATTGGAGAGGCTGCCTTCAGAAACCCTAGAATTCCTGTTTTGTATCTTCGCTTTCTCTTTACCACTTGGTGGCCGACGTTCTCGTTCTGATCTCATTCTGCAAAATGGATGATTCCCATCGCAAAAGGCTCTCTCGATCCCCATCCCCCCTAAGAGCTCCTTCAAGGTCAAGATCTAGATCTAGGTCGCCATCTAGGCCGCGATCTAGACCCAGGTCAAGATCCAGATCATGGTCAAGGCCAAGGTCCCGAAGTCGTGGAAGATCAAGGTCCAGAAGTCGTGGGAGGGAGGAGAATGCCCATAACACTGGGAATACGCTGTATGTCACTGGTCTGTCTACAAGGGTCACCGAAAGAGACCTTGAAGAGCACTTTTCCAAGGAAGGCAAGGTAGCTTCTTGTTTCCTTGTGGTTGAACCCCGAACACGGATTTCTCGTGGCTTTGCATTTGTTACGATGGACAATGCTGATGGTGCCAATCGGTGTGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACTGTGGAGAAGTCCCGGAGGAAACGGCCAAGAACACCAACACCCGGACACTATTTAGGGCTGAAAAATGCACGAGACTCTGATTATCGTGGTGATCGAGGTGGTGATCGAGGTAGGTATCGTGGTGGCTCTTACCGTGATGACTATGGGTATCGTCGGTCTCCAAGACGCTCTCCTTATCGAGGGCCTCGAGAGTACTCTCCTCCCCCTTATGTTGGAAGATCAAGGCGGGATCACTCTAGGTCGCCTCCTTACTCTCCATATGGCAGCTCGGATAGGAGGTATCCTCGTGGCTCTAGGTGAGGTGAGGCTCCTTTTAATGGTCTTCTTGCGGTGCTTTTAAACATGACGATTGATGGTTGTGTGCTCGAACGTTTGATTTTGTACTCTTGTTAGCTGTAAGAAGTTCAATTGGCTGGATGTTATCTTGAGGTGTATGGATGTTCTGTGTTCCTGACTTGGTTAAGTGACAATATTATTTTAGACTTTTGTTTTTTGTTTTGTAATCTTTATAATCTTTTTCCTTTCTGTAACCACTATGGCTTATTTGACGAACGGTATTAACAGTAGTTTCCTGCCGCAACTAAGCATGGCA

Coding sequence (CDS)

ATGGATGATTCCCATCGCAAAAGGCTCTCTCGATCCCCATCCCCCCTAAGAGCTCCTTCAAGGTCAAGATCTAGATCTAGGTCGCCATCTAGGCCGCGATCTAGACCCAGGTCAAGATCCAGATCATGGTCAAGGCCAAGGTCCCGAAGTCGTGGAAGATCAAGGTCCAGAAGTCGTGGGAGGGAGGAGAATGCCCATAACACTGGGAATACGCTGTATGTCACTGGTCTGTCTACAAGGGTCACCGAAAGAGACCTTGAAGAGCACTTTTCCAAGGAAGGCAAGGTAGCTTCTTGTTTCCTTGTGGTTGAACCCCGAACACGGATTTCTCGTGGCTTTGCATTTGTTACGATGGACAATGCTGATGGTGCCAATCGGTGTGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACTGTGGAGAAGTCCCGGAGGAAACGGCCAAGAACACCAACACCCGGACACTATTTAGGGCTGAAAAATGCACGAGACTCTGATTATCGTGGTGATCGAGGTGGTGATCGAGGTAGGTATCGTGGTGGCTCTTACCGTGATGACTATGGGTATCGTCGGTCTCCAAGACGCTCTCCTTATCGAGGGCCTCGAGAGTACTCTCCTCCCCCTTATGTTGGAAGATCAAGGCGGGATCACTCTAGGTCGCCTCCTTACTCTCCATATGGCAGCTCGGATAGGAGGTATCCTCGTGGCTCTAGGTGA

Protein sequence

MDDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRGREENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNARDSDYRGDRGGDRGRYRGGSYRDDYGYRRSPRRSPYRGPREYSPPPYVGRSRRDHSRSPPYSPYGSSDRRYPRGSR

Homology

[Close]

BLAST of Sed0017861 vs. NCBI nr
Match: XP_022950652.1 (serine/arginine-rich splicing factor SR45a [Cucurbita moschata] >XP_022978005.1 serine/arginine-rich splicing factor SR45a [Cucurbita maxima] >XP_023543883.1 serine/arginine-rich splicing factor SR45a [Cucurbita pepo subsp. pepo] >KAG6603882.1 Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 371.7 bits (953), Expect = 4.8e-99
Identity = 211/248 (85.08%), Postives = 218/248 (87.90%), Query Frame = 0


Query: 1   MDDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRG 60
           M DSHRKR SRSPSP RAPSRSRSRS      RSRPRSRSRSWSRPRSRSRGRSRSRSRG
Sbjct: 1   MADSHRKRYSRSPSPWRAPSRSRSRS------RSRPRSRSRSWSRPRSRSRGRSRSRSRG 60

Query: 61  REENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 120
           R EN +N GNTLYVTGLSTRVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFVTMDN
Sbjct: 61  RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN 120

Query: 121 ADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNARDSDYRGDRGGDRGR 180
            D ANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLK+ RDS YRG+RG    R
Sbjct: 121 VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERG---SR 180

Query: 181 YRGGSYRDDYGYRRSPRRSPYRGPREY----SPPPY-VGRSRRDHSRSPPYSPY--GSSD 240
           YRGGS+R+DYG+RRSPRRSPYRG REY    SPPPY  GRSRRDHSRSPPYSPY  GS D
Sbjct: 181 YRGGSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPD 239

Query: 241 RRYPRGSR 242
           RRYPRGSR
Sbjct: 241 RRYPRGSR 239

[Close]

BLAST of Sed0017861 vs. NCBI nr
Match: XP_023003930.1 (serine/arginine-rich splicing factor SR45a-like [Cucurbita maxima])

HSP 1 Score: 369.4 bits (947), Expect = 2.4e-98
Identity = 212/244 (86.89%), Postives = 213/244 (87.30%), Query Frame = 0


Query: 1   MDDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRG 60
           M  SHRKR SRSPSP RAPSRSRSRSRS    RSRPRSRSRSWSRPRS+SRGRSRSRSRG
Sbjct: 1   MAGSHRKRHSRSPSPWRAPSRSRSRSRS----RSRPRSRSRSWSRPRSQSRGRSRSRSRG 60

Query: 61  REENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 120
           R ENA N GNTLYVTGLS RVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFV MDN
Sbjct: 61  R-ENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDN 120

Query: 121 ADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNARDSDYRGDRGGDRGR 180
            D ANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKN RDS YR     DRGR
Sbjct: 121 VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNTRDSGYR----DDRGR 180

Query: 181 YRGGSYRDDYGYRRSPRRSPYRGPREYSP---PPYVGRSRRDHSRSPPYSPYGSSDRRYP 240
           YRGGS RDDYGYRRSPRRSPYRG REYSP   P Y GRSRRDHSRSPPYSPYGS D RYP
Sbjct: 181 YRGGSLRDDYGYRRSPRRSPYRGTREYSPRHSPLYGGRSRRDHSRSPPYSPYGSPDSRYP 235

Query: 241 RGSR 242
           RGSR
Sbjct: 241 RGSR 235

[Close]

BLAST of Sed0017861 vs. NCBI nr
Match: XP_038881911.1 (serine/arginine-rich splicing factor SR45a [Benincasa hispida])

HSP 1 Score: 369.4 bits (947), Expect = 2.4e-98
Identity = 213/249 (85.54%), Postives = 219/249 (87.95%), Query Frame = 0


Query: 1   MDDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRG 60
           M DSHRKR SRSPSP RAPSRSRSRSRS    RSRPRSRSRSWSRPRS SRGRSRSRSRG
Sbjct: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRS----RSRPRSRSRSWSRPRSPSRGRSRSRSRG 60

Query: 61  REENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 120
           R ++AHN GNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN
Sbjct: 61  R-DHAHNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 120

Query: 121 ADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNARDSDYRGDRGGDRGR 180
            D ANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLK+ RD+ YRGDRG    R
Sbjct: 121 VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDAGYRGDRG---SR 180

Query: 181 YR-GGSYRDDYGYRRSPRRSPYRGPREYSP----PPYVGRSRRDHSRSPPYSP---YGSS 240
           YR GGS+RDDYGYRRSPRRSPYRG REYSP    PPY GRSRRDHSRSPPY+P    GS 
Sbjct: 181 YRGGGSFRDDYGYRRSPRRSPYRGAREYSPPRHSPPYGGRSRRDHSRSPPYTPPPYGGSP 240

Query: 241 DRRYPRGSR 242
           DRRYPRGSR
Sbjct: 241 DRRYPRGSR 241

[Close]

BLAST of Sed0017861 vs. NCBI nr
Match: XP_022133034.1 (serine/arginine-rich splicing factor SR45a isoform X1 [Momordica charantia])

HSP 1 Score: 366.3 bits (939), Expect = 2.0e-97
Identity = 212/243 (87.24%), Postives = 219/243 (90.12%), Query Frame = 0


Query: 1   MDDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRG 60
           M DSHRKR SRSPSP RAPSRSRSRSRS    RSRPRSRSRSWSRPRSRSRGRSRSRSRG
Sbjct: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRS----RSRPRSRSRSWSRPRSRSRGRSRSRSRG 60

Query: 61  REENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 120
           R ++A NTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN
Sbjct: 61  R-DHALNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 120

Query: 121 ADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNARDSDYRGDRGGDRGR 180
            D ANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLK+ RDS YRGDRGG R  
Sbjct: 121 VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGDRGG-RYH 180

Query: 181 YRGGSYRDDYGYRRSPRRSPYRGPREYSPPPYVGRSRRDHSRSPPYS-PYGSSDRRY-PR 240
             GGS+R+DYGYRRSPRRSPYRG REYS PPY GRSRR+HSRSPPYS PYGS DRRY PR
Sbjct: 181 GGGGSFREDYGYRRSPRRSPYRGAREYS-PPYGGRSRREHSRSPPYSPPYGSPDRRYPPR 236

Query: 241 GSR 242
           G+R
Sbjct: 241 GAR 236

[Close]

BLAST of Sed0017861 vs. NCBI nr
Match: XP_022926991.1 (serine/arginine-rich splicing factor SR45a-like [Cucurbita moschata])

HSP 1 Score: 364.8 bits (935), Expect = 5.8e-97
Identity = 208/244 (85.25%), Postives = 209/244 (85.66%), Query Frame = 0


Query: 1   MDDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRG 60
           M DSHRKR SRSPSP RAPSRS          RSRPRSRSRSWSRPRS+SRGRSRSRSRG
Sbjct: 1   MADSHRKRYSRSPSPWRAPSRS----------RSRPRSRSRSWSRPRSQSRGRSRSRSRG 60

Query: 61  REENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 120
           R ENA N GNTLYVTGLS RVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFV MDN
Sbjct: 61  R-ENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDN 120

Query: 121 ADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNARDSDYRGDRGGDRGR 180
            D ANR VKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKN RDS YR     DRGR
Sbjct: 121 VDDANRYVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNTRDSGYR----DDRGR 180

Query: 181 YRGGSYRDDYGYRRSPRRSPYRGPREYSP---PPYVGRSRRDHSRSPPYSPYGSSDRRYP 240
           YRGGS RDDYGYRRSPRRSPYRGPREYSP   P Y GRSRRDHSRSPPYSPYGS DRRYP
Sbjct: 181 YRGGSLRDDYGYRRSPRRSPYRGPREYSPRHSPLYGGRSRRDHSRSPPYSPYGSPDRRYP 229

Query: 241 RGSR 242
           RGSR
Sbjct: 241 RGSR 229

[Close]

BLAST of Sed0017861 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-30
Identity = 119/247 (48.18%), Postives = 138/247 (55.87%), Query Frame = 0


Query: 15  PLRAPSRS-RSRSRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRGREENAHNTGNTLY 74
           PLR  +RS  S SR   R R  P        R RS SR  SRS +R    +A N GN+LY
Sbjct: 22  PLRLENRSPMSYSR---RSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLY 81

Query: 75  VTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNADGANRCVKHLNQ 134
           VTGLS RVTERDLE+HF+KEGKV    LV++P TR SRGF F++M +   ANRC++ L+ 
Sbjct: 82  VTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDH 141

Query: 135 SILEGRYITVEKSRRKRPRTPTPGHYLGLKNAR----DSDYRGDRGGDRGRYRGGSYRDD 194
           S+L+GR ITVEK+RR+R RTPTPG YLGL+ AR       Y   R     R R  SY  D
Sbjct: 142 SVLQGRVITVEKARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSCSRSRSRSYSSD 201

Query: 195 --------YGYR-RSPRRSP-YRGPREYSP-----PPYVGRSRRDHSRSPPYSPYGSSDR 242
                   YG R RS   SP YR  R YSP     P      RRD S SP Y     S R
Sbjct: 202 RGRSYSPSYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDRSYSPYYRRRDRS-R 261

[Close]

BLAST of Sed0017861 vs. ExPASy Swiss-Prot
Match: Q3ZBT6 (Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-19
Identity = 109/250 (43.60%), Postives = 126/250 (50.40%), Query Frame = 0


Query: 8   RLSRSPSPLRAPSRSRSR-------SRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRG 67
           R SRS S  R+ SRSRSR       +RS SR RS  RSRSRS+SR   R    S S    
Sbjct: 44  RRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMST 103

Query: 68  REENAHNTGN-----TLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAF 127
           R  +  N  N      L V GLS   TERDL E FSK G +A   +V + ++R SRGFAF
Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAF 163

Query: 128 VTMDNADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLG---LKNARDSDY-- 187
           V  +N D A    +  N   L+GR I V+ S  KRP TPTPG Y+G     ++R  DY  
Sbjct: 164 VYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYD 223

Query: 188 RG-DRGGDRGRYRGGSYRDDYGYRRSPRRSPYRGP--REYSPPPYVGR-SRRDHSRSPPY 237
           RG DRG D   Y   SYR   G     R +  R    R  SP PY  R   R  SRS  Y
Sbjct: 224 RGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSY 283

[Close]

BLAST of Sed0017861 vs. ExPASy Swiss-Prot
Match: P62995 (Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-19
Identity = 109/250 (43.60%), Postives = 126/250 (50.40%), Query Frame = 0


Query: 8   RLSRSPSPLRAPSRSRSR-------SRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRG 67
           R SRS S  R+ SRSRSR       +RS SR RS  RSRSRS+SR   R    S S    
Sbjct: 44  RRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMST 103

Query: 68  REENAHNTGN-----TLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAF 127
           R  +  N  N      L V GLS   TERDL E FSK G +A   +V + ++R SRGFAF
Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAF 163

Query: 128 VTMDNADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLG---LKNARDSDY-- 187
           V  +N D A    +  N   L+GR I V+ S  KRP TPTPG Y+G     ++R  DY  
Sbjct: 164 VYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYD 223

Query: 188 RG-DRGGDRGRYRGGSYRDDYGYRRSPRRSPYRGP--REYSPPPYVGR-SRRDHSRSPPY 237
           RG DRG D   Y   SYR   G     R +  R    R  SP PY  R   R  SRS  Y
Sbjct: 224 RGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSY 283

[Close]

BLAST of Sed0017861 vs. ExPASy Swiss-Prot
Match: P62996 (Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-19
Identity = 109/250 (43.60%), Postives = 126/250 (50.40%), Query Frame = 0


Query: 8   RLSRSPSPLRAPSRSRSR-------SRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRG 67
           R SRS S  R+ SRSRSR       +RS SR RS  RSRSRS+SR   R    S S    
Sbjct: 44  RRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMST 103

Query: 68  REENAHNTGN-----TLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAF 127
           R  +  N  N      L V GLS   TERDL E FSK G +A   +V + ++R SRGFAF
Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAF 163

Query: 128 VTMDNADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLG---LKNARDSDY-- 187
           V  +N D A    +  N   L+GR I V+ S  KRP TPTPG Y+G     ++R  DY  
Sbjct: 164 VYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYD 223

Query: 188 RG-DRGGDRGRYRGGSYRDDYGYRRSPRRSPYRGP--REYSPPPYVGR-SRRDHSRSPPY 237
           RG DRG D   Y   SYR   G     R +  R    R  SP PY  R   R  SRS  Y
Sbjct: 224 RGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSY 283

[Close]

BLAST of Sed0017861 vs. ExPASy Swiss-Prot
Match: P62997 (Transformer-2 protein homolog beta OS=Rattus norvegicus OX=10116 GN=Tra2b PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-19
Identity = 109/250 (43.60%), Postives = 126/250 (50.40%), Query Frame = 0


Query: 8   RLSRSPSPLRAPSRSRSR-------SRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRG 67
           R SRS S  R+ SRSRSR       +RS SR RS  RSRSRS+SR   R    S S    
Sbjct: 44  RRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMST 103

Query: 68  REENAHNTGN-----TLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAF 127
           R  +  N  N      L V GLS   TERDL E FSK G +A   +V + ++R SRGFAF
Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAF 163

Query: 128 VTMDNADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLG---LKNARDSDY-- 187
           V  +N D A    +  N   L+GR I V+ S  KRP TPTPG Y+G     ++R  DY  
Sbjct: 164 VYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYD 223

Query: 188 RG-DRGGDRGRYRGGSYRDDYGYRRSPRRSPYRGP--REYSPPPYVGR-SRRDHSRSPPY 237
           RG DRG D   Y   SYR   G     R +  R    R  SP PY  R   R  SRS  Y
Sbjct: 224 RGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSY 283

[Close]

BLAST of Sed0017861 vs. ExPASy TrEMBL
Match: A0A6J1INV2 (serine/arginine-rich splicing factor SR45a OS=Cucurbita maxima OX=3661 GN=LOC111478126 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.3e-99
Identity = 211/248 (85.08%), Postives = 218/248 (87.90%), Query Frame = 0


Query: 1   MDDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRG 60
           M DSHRKR SRSPSP RAPSRSRSRS      RSRPRSRSRSWSRPRSRSRGRSRSRSRG
Sbjct: 1   MADSHRKRYSRSPSPWRAPSRSRSRS------RSRPRSRSRSWSRPRSRSRGRSRSRSRG 60

Query: 61  REENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 120
           R EN +N GNTLYVTGLSTRVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFVTMDN
Sbjct: 61  RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN 120

Query: 121 ADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNARDSDYRGDRGGDRGR 180
            D ANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLK+ RDS YRG+RG    R
Sbjct: 121 VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERG---SR 180

Query: 181 YRGGSYRDDYGYRRSPRRSPYRGPREY----SPPPY-VGRSRRDHSRSPPYSPY--GSSD 240
           YRGGS+R+DYG+RRSPRRSPYRG REY    SPPPY  GRSRRDHSRSPPYSPY  GS D
Sbjct: 181 YRGGSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPD 239

Query: 241 RRYPRGSR 242
           RRYPRGSR
Sbjct: 241 RRYPRGSR 239

[Close]

BLAST of Sed0017861 vs. ExPASy TrEMBL
Match: A0A6J1GFF0 (serine/arginine-rich splicing factor SR45a OS=Cucurbita moschata OX=3662 GN=LOC111453689 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.3e-99
Identity = 211/248 (85.08%), Postives = 218/248 (87.90%), Query Frame = 0


Query: 1   MDDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRG 60
           M DSHRKR SRSPSP RAPSRSRSRS      RSRPRSRSRSWSRPRSRSRGRSRSRSRG
Sbjct: 1   MADSHRKRYSRSPSPWRAPSRSRSRS------RSRPRSRSRSWSRPRSRSRGRSRSRSRG 60

Query: 61  REENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 120
           R EN +N GNTLYVTGLSTRVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFVTMDN
Sbjct: 61  RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN 120

Query: 121 ADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNARDSDYRGDRGGDRGR 180
            D ANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLK+ RDS YRG+RG    R
Sbjct: 121 VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERG---SR 180

Query: 181 YRGGSYRDDYGYRRSPRRSPYRGPREY----SPPPY-VGRSRRDHSRSPPYSPY--GSSD 240
           YRGGS+R+DYG+RRSPRRSPYRG REY    SPPPY  GRSRRDHSRSPPYSPY  GS D
Sbjct: 181 YRGGSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPD 239

Query: 241 RRYPRGSR 242
           RRYPRGSR
Sbjct: 241 RRYPRGSR 239

[Close]

BLAST of Sed0017861 vs. ExPASy TrEMBL
Match: A0A6J1KT61 (serine/arginine-rich splicing factor SR45a-like OS=Cucurbita maxima OX=3661 GN=LOC111497374 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.1e-98
Identity = 212/244 (86.89%), Postives = 213/244 (87.30%), Query Frame = 0


Query: 1   MDDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRG 60
           M  SHRKR SRSPSP RAPSRSRSRSRS    RSRPRSRSRSWSRPRS+SRGRSRSRSRG
Sbjct: 1   MAGSHRKRHSRSPSPWRAPSRSRSRSRS----RSRPRSRSRSWSRPRSQSRGRSRSRSRG 60

Query: 61  REENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 120
           R ENA N GNTLYVTGLS RVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFV MDN
Sbjct: 61  R-ENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDN 120

Query: 121 ADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNARDSDYRGDRGGDRGR 180
            D ANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKN RDS YR     DRGR
Sbjct: 121 VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNTRDSGYR----DDRGR 180

Query: 181 YRGGSYRDDYGYRRSPRRSPYRGPREYSP---PPYVGRSRRDHSRSPPYSPYGSSDRRYP 240
           YRGGS RDDYGYRRSPRRSPYRG REYSP   P Y GRSRRDHSRSPPYSPYGS D RYP
Sbjct: 181 YRGGSLRDDYGYRRSPRRSPYRGTREYSPRHSPLYGGRSRRDHSRSPPYSPYGSPDSRYP 235

Query: 241 RGSR 242
           RGSR
Sbjct: 241 RGSR 235

[Close]

BLAST of Sed0017861 vs. ExPASy TrEMBL
Match: A0A6J1BUT3 (serine/arginine-rich splicing factor SR45a isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005727 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 9.7e-98
Identity = 212/243 (87.24%), Postives = 219/243 (90.12%), Query Frame = 0


Query: 1   MDDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRG 60
           M DSHRKR SRSPSP RAPSRSRSRSRS    RSRPRSRSRSWSRPRSRSRGRSRSRSRG
Sbjct: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRS----RSRPRSRSRSWSRPRSRSRGRSRSRSRG 60

Query: 61  REENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 120
           R ++A NTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN
Sbjct: 61  R-DHALNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 120

Query: 121 ADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNARDSDYRGDRGGDRGR 180
            D ANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLK+ RDS YRGDRGG R  
Sbjct: 121 VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGDRGG-RYH 180

Query: 181 YRGGSYRDDYGYRRSPRRSPYRGPREYSPPPYVGRSRRDHSRSPPYS-PYGSSDRRY-PR 240
             GGS+R+DYGYRRSPRRSPYRG REYS PPY GRSRR+HSRSPPYS PYGS DRRY PR
Sbjct: 181 GGGGSFREDYGYRRSPRRSPYRGAREYS-PPYGGRSRREHSRSPPYSPPYGSPDRRYPPR 236

Query: 241 GSR 242
           G+R
Sbjct: 241 GAR 236

[Close]

BLAST of Sed0017861 vs. ExPASy TrEMBL
Match: A0A6J1EGF8 (serine/arginine-rich splicing factor SR45a-like OS=Cucurbita moschata OX=3662 GN=LOC111433944 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.8e-97
Identity = 208/244 (85.25%), Postives = 209/244 (85.66%), Query Frame = 0


Query: 1   MDDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRG 60
           M DSHRKR SRSPSP RAPSRS          RSRPRSRSRSWSRPRS+SRGRSRSRSRG
Sbjct: 1   MADSHRKRYSRSPSPWRAPSRS----------RSRPRSRSRSWSRPRSQSRGRSRSRSRG 60

Query: 61  REENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 120
           R ENA N GNTLYVTGLS RVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFV MDN
Sbjct: 61  R-ENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDN 120

Query: 121 ADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNARDSDYRGDRGGDRGR 180
            D ANR VKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKN RDS YR     DRGR
Sbjct: 121 VDDANRYVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNTRDSGYR----DDRGR 180

Query: 181 YRGGSYRDDYGYRRSPRRSPYRGPREYSP---PPYVGRSRRDHSRSPPYSPYGSSDRRYP 240
           YRGGS RDDYGYRRSPRRSPYRGPREYSP   P Y GRSRRDHSRSPPYSPYGS DRRYP
Sbjct: 181 YRGGSLRDDYGYRRSPRRSPYRGPREYSPRHSPLYGGRSRRDHSRSPPYSPYGSPDRRYP 229

Query: 241 RGSR 242
           RGSR
Sbjct: 241 RGSR 229

[Close]

BLAST of Sed0017861 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 237.7 bits (605), Expect = 1.0e-62
Identity = 163/255 (63.92%), Postives = 182/255 (71.37%), Query Frame = 0


Query: 2   DDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRP--RSRSRGRSRSRSR 61
           D   R+R SRSPSP +  +RSRSRSRS SR R R RSRSRS  RP   SRSRGRSRSRSR
Sbjct: 3   DSPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSR 62

Query: 62  GREENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMD 121
           GR E   N G TLYVTGLSTRVT++DLE HF+KEGKVASCFLV+EPRTR+SRGFAFVTM 
Sbjct: 63  GRSE-VENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 122

Query: 122 NADGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNARDSDYRGDRGGDRG 181
           +   A RC+K+LNQS+LEGRYITVE+SRRKRPRTPTPGHYLGLK++RDSD  G     RG
Sbjct: 123 SLKDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSSRDSDREG--RSSRG 182

Query: 182 RYRGGSYRDDYGYRRSPRRSPYRGPREYSPPPYVGRSRRDHSRSPPYSPYG--------- 241
           R+     RDDY  RRSPR       R+YSP     RSRRD S    YSP+G         
Sbjct: 183 RHYD---RDDYRDRRSPR-------RDYSPRD-ERRSRRDRS----YSPHGRSPERRSER 239

[Close]

BLAST of Sed0017861 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 235.0 bits (598), Expect = 6.5e-62
Identity = 158/253 (62.45%), Postives = 177/253 (69.96%), Query Frame = 0


Query: 2   DDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRPRSRSRGRSRSRSRGR 61
           D   R+R SRSPSP +  +RSRSRSRS SR R R RSRSRS  RP S SR R RSRSR R
Sbjct: 3   DSPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSR 62

Query: 62  EENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNA 121
                N G TLYVTGLSTRVT++DLE HF+KEGKVASCFLV+EPRTR+SRGFAFVTM + 
Sbjct: 63  GSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSL 122

Query: 122 DGANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNARDSDYRGDRGGDRGRY 181
             A RC+K+LNQS+LEGRYITVE+SRRKRPRTPTPGHYLGLK++RDSD  G     RGR+
Sbjct: 123 KDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSSRDSDREG--RSSRGRH 182

Query: 182 RGGSYRDDYGYRRSPRRSPYRGPREYSPPPYVGRSRRDHSRSPPYSPYG----------- 241
                RDDY  RRSPR       R+YSP     RSRRD S    YSP+G           
Sbjct: 183 YD---RDDYRDRRSPR-------RDYSPRD-ERRSRRDRS----YSPHGRSPERRSERRS 238

[Close]

BLAST of Sed0017861 vs. TAIR 10
Match: AT4G35785.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 173.7 bits (439), Expect = 1.8e-43
Identity = 105/146 (71.92%), Postives = 118/146 (80.82%), Query Frame = 0


Query: 2   DDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRP--RSRSRGRSRSRSR 61
           D   R+R SRSPSP +  +RSRSRSRS SR R R RSRSRS  RP   SRSRGRSRSRSR
Sbjct: 3   DSPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSR 62

Query: 62  GREENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMD 121
           GR E   N G TLYVTGLSTRVT++DLE HF+KEGKVASCFLV+EPRTR+SRGFAFVTM 
Sbjct: 63  GRSE-VENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 122

Query: 122 NADGANRCVKHLNQSILEGRYITVEK 146
           +   A RC+K+LNQS+LEGRYITVE+
Sbjct: 123 SLKDAERCIKYLNQSVLEGRYITVER 147

[Close]

BLAST of Sed0017861 vs. TAIR 10
Match: AT4G35785.4 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 161.8 bits (408), Expect = 7.0e-40
Identity = 102/159 (64.15%), Postives = 115/159 (72.33%), Query Frame = 0


Query: 2   DDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRP--RSRSRGR------ 61
           D   R+R SRSPSP +  +RSRSRSRS SR R R RSRSRS  RP   SRSRGR      
Sbjct: 3   DSPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRILRGNL 62

Query: 62  -------SRSRSRGREENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPR 121
                   RSRSR R     N G TLYVTGLSTRVT++DLE HF+KEGKVASCFLV+EPR
Sbjct: 63  FFITCTLCRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPR 122

Query: 122 TRISRGFAFVTMDNADGANRCVKHLNQSILEGRYITVEK 146
           TR+SRGFAFVTM +   A RC+K+LNQS+LEGRYITVE+
Sbjct: 123 TRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 161

[Close]

BLAST of Sed0017861 vs. TAIR 10
Match: AT4G35785.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 161.8 bits (408), Expect = 7.0e-40
Identity = 102/159 (64.15%), Postives = 115/159 (72.33%), Query Frame = 0


Query: 2   DDSHRKRLSRSPSPLRAPSRSRSRSRSPSRPRSRPRSRSRSWSRP--RSRSRGR------ 61
           D   R+R SRSPSP +  +RSRSRSRS SR R R RSRSRS  RP   SRSRGR      
Sbjct: 3   DSPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRILRGNL 62

Query: 62  -------SRSRSRGREENAHNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPR 121
                   RSRSR R     N G TLYVTGLSTRVT++DLE HF+KEGKVASCFLV+EPR
Sbjct: 63  FFITCTLCRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPR 122

Query: 122 TRISRGFAFVTMDNADGANRCVKHLNQSILEGRYITVEK 146
           TR+SRGFAFVTM +   A RC+K+LNQS+LEGRYITVE+
Sbjct: 123 TRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 161

The following BLAST results are available for this feature:

BLAST of Sed0017861 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950652.1	4.8e-99	85.08	serine/arginine-rich splicing factor SR45a [Cucurbita moschata] >XP_022978005.1 ...	[more]
XP_023003930.1	2.4e-98	86.89	serine/arginine-rich splicing factor SR45a-like [Cucurbita maxima]	[more]
XP_038881911.1	2.4e-98	85.54	serine/arginine-rich splicing factor SR45a [Benincasa hispida]	[more]
XP_022133034.1	2.0e-97	87.24	serine/arginine-rich splicing factor SR45a isoform X1 [Momordica charantia]	[more]
XP_022926991.1	5.8e-97	85.25	serine/arginine-rich splicing factor SR45a-like [Cucurbita moschata]	[more]

BLAST of Sed0017861 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	1.7e-30	48.18	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q3ZBT6	1.7e-19	43.60	Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1	[more]
P62995	1.7e-19	43.60	Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1	[more]
P62996	1.7e-19	43.60	Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1	[more]
P62997	1.7e-19	43.60	Transformer-2 protein homolog beta OS=Rattus norvegicus OX=10116 GN=Tra2b PE=1 S...	[more]

BLAST of Sed0017861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1INV2	2.3e-99	85.08	serine/arginine-rich splicing factor SR45a OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GFF0	2.3e-99	85.08	serine/arginine-rich splicing factor SR45a OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1KT61	1.1e-98	86.89	serine/arginine-rich splicing factor SR45a-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1BUT3	9.7e-98	87.24	serine/arginine-rich splicing factor SR45a isoform X1 OS=Momordica charantia OX=...	[more]
A0A6J1EGF8	2.8e-97	85.25	serine/arginine-rich splicing factor SR45a-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Sed0017861 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35785.2	1.0e-62	63.92	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.1	6.5e-62	62.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.3	1.8e-43	71.92	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.4	7.0e-40	64.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.5	7.0e-40	64.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 71..144 e-value: 3.6E-24 score: 96.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 72..141 e-value: 5.8E-17 score: 61.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 70..148 score: 16.892406
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..155 e-value: 1.8E-29 score: 104.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..201
None	No IPR available	PANTHER	PTHR48034:SF11	RNA RECOGNITION MOTIF	coord: 3..237
None	No IPR available	PANTHER	PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	coord: 3..237
None	No IPR available	CDD	cd12382	RRM_RBMX_like	coord: 69..148 e-value: 3.67639E-38 score: 126.184
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 25..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017861.1	Sed0017861.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding