Sed0017800 (gene) Chayote v1

Overview


Name	Sed0017800
Type	gene
Organism	Sechium edule (Chayote v1)
Description	F-box domain-containing protein
Location	LG10: 9291608 .. 9292242 (-)
RNA-Seq Expression	Sed0017800
Synteny	Sed0017800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACTCTCAGTCCTGGGCAAGAAGGTACTCTGATCTCCCTCGTGAACTATTATCCCTCATCGGAAAACGTATAGATACTTCGGGCGATGCCCTCCGATTTCGCAGCGTCTGTCGATCTTGGCGCGCTTCTCTTCCTAAATCCAAGGCTGTTCTTCTTCATTCACGTCTCCGTTTCCCTTCCCTCTATCCCAAAGGCAGTGACATTTTTCTGACCAGAAGGATAATCTATCGCTTCCAAACCATGCCGTCTTCTCCATCAACCTGGTTAGCCAAGGTGGAGAGTACAAAGTTTGGTCAAATCCGATTTCTCAACTCTATGTAACACATTGTTCAACAAATCCTCAGGAAGCGAACTGGCTCAACCTTCGATTCGAGGAAGTTGCTACATCGTATTGGCTTGAAAGCCGTACTATTGGTTATAACCTTTATGATCAAATTACCAAGGTTGTACTGTCTCCTGATTATATTTGGACAGATCGCAGCACCTGCACCATTGTAGCAATTTATAGCAAAGGCACACTAGGGTTTGCTAAATACAAAGGTGAAAGTTGGAGGCGAATCGATGATCACAACTTCGATTACGATGATGTGATTGTGTACAAGGGGAAGATTTGCCTTCCGGGAACATAA

mRNA sequence

ATGGAGAACTCTCAGTCCTGGGCAAGAAGGTACTCTGATCTCCCTCGTGAACTATTATCCCTCATCGGAAAACGTATAGATACTTCGGGCGATGCCCTCCGATTTCGCAGCGTCTGTCGATCTTGGCGCGCTTCTCTTCCTAAATCCAAGGCTGTTCTTCTTCATTCACGTCTCCGTTTCCCTTCCCTCTATCCCAAAGGCAGTGACATTTTTCTGACCAGAAGGATAATCTATCGCTTCCAAACCATGCCGTCTTCTCCATCAACCTGGTTAGCCAAGGAAGCGAACTGGCTCAACCTTCGATTCGAGGAAGTTGCTACATCGTATTGGCTTGAAAGCCGTACTATTGGTTATAACCTTTATGATCAAATTACCAAGGTTGTACTGTCTCCTGATTATATTTGGACAGATCGCAGCACCTGCACCATTGTAGCAATTTATAGCAAAGGCACACTAGGGTTTGCTAAATACAAAGGTGAAAGTTGGAGGCGAATCGATGATCACAACTTCGATTACGATGATGTGATTGTGTACAAGGGGAAGATTTGCCTTCCGGGAACATAA

Coding sequence (CDS)

ATGGAGAACTCTCAGTCCTGGGCAAGAAGGTACTCTGATCTCCCTCGTGAACTATTATCCCTCATCGGAAAACGTATAGATACTTCGGGCGATGCCCTCCGATTTCGCAGCGTCTGTCGATCTTGGCGCGCTTCTCTTCCTAAATCCAAGGCTGTTCTTCTTCATTCACGTCTCCGTTTCCCTTCCCTCTATCCCAAAGGCAGTGACATTTTTCTGACCAGAAGGATAATCTATCGCTTCCAAACCATGCCGTCTTCTCCATCAACCTGGTTAGCCAAGGAAGCGAACTGGCTCAACCTTCGATTCGAGGAAGTTGCTACATCGTATTGGCTTGAAAGCCGTACTATTGGTTATAACCTTTATGATCAAATTACCAAGGTTGTACTGTCTCCTGATTATATTTGGACAGATCGCAGCACCTGCACCATTGTAGCAATTTATAGCAAAGGCACACTAGGGTTTGCTAAATACAAAGGTGAAAGTTGGAGGCGAATCGATGATCACAACTTCGATTACGATGATGTGATTGTGTACAAGGGGAAGATTTGCCTTCCGGGAACATAA

Protein sequence

MENSQSWARRYSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLHSRLRFPSLYPKGSDIFLTRRIIYRFQTMPSSPSTWLAKEANWLNLRFEEVATSYWLESRTIGYNLYDQITKVVLSPDYIWTDRSTCTIVAIYSKGTLGFAKYKGESWRRIDDHNFDYDDVIVYKGKICLPGT

Homology

[Close]

BLAST of Sed0017800 vs. NCBI nr
Match: XP_038881861.1 (putative F-box protein At1g65770 [Benincasa hispida])

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-29
Identity = 97/232 (41.81%), Postives = 114/232 (49.14%), Query Frame = 0


Query: 10  RYSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLHSRLRFPS---LYPK 69
           R+SDLP EL  +IGKR+DT  D LRFRSVCRSWRASLP   A+     L  PS       
Sbjct: 7   RWSDLPPELWPIIGKRLDTHIDILRFRSVCRSWRASLPPFNAISPLLPLDLPSPVFAADH 66

Query: 70  GSDIFLTRRIIYRF------QTMPSSPST-------------------WLA--------- 129
            +D FL RRIIYR       QT  S+ S+                   WLA         
Sbjct: 67  LTDAFLIRRIIYRLSPLHHRQTSDSASSSSSSSSSSSSSSSSSCAAEGWLAKVESTKLGK 126

Query: 130 --------------------KEANWLNLRFEEVATSYWLESRTIGYN---LYDQITKVVL 182
                               KE N L+    EVA SY     T+GY    L  +ITKVV+
Sbjct: 127 MRFLHPLSTRYAKYNNELFRKEVNLLDFGIYEVAKSY-----TLGYTNGALVPRITKVVM 186

[Close]

BLAST of Sed0017800 vs. NCBI nr
Match: XP_023544298.1 (putative F-box protein At1g65770 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544299.1 putative F-box protein At1g65770 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.0 bits (349), Expect = 4.0e-29
Identity = 90/214 (42.06%), Postives = 113/214 (52.80%), Query Frame = 0


Query: 10  RYSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLHSRLRFPSL------ 69
           R+SDLP EL  LIGKR++T  D LRFRSVC+SWRAS+P+   +   S L+FPS       
Sbjct: 7   RWSDLPPELCLLIGKRLETYIDVLRFRSVCKSWRASVPRFDGISPLSPLQFPSPTNARRG 66

Query: 70  YPKGSDIFLTRRIIYRF------QTMPSSPSTWLA------------------------- 129
           Y       L RRIIY F      +T  SS S                             
Sbjct: 67  YLAAGHTLLHRRIIYCFSPLHHHRTSNSSSSRLFTKDKSTKLGTIRFVDLFSNLLVVFDD 126

Query: 130 ----KEANWLNLRFEEVATSYWLESRTIGYNLYDQITKVVLSPDYIWTDRSTCTIVAIYS 183
               K+ N+L+ R  EVA SY L+    G  L   ITKV++ PD  WTD  T  IVA+Y 
Sbjct: 127 ETFRKDVNFLDFRIYEVAKSYALQYTRGG--LVSGITKVIMYPDSGWTDFRTRIIVAVYG 186

[Close]

BLAST of Sed0017800 vs. NCBI nr
Match: XP_023518907.1 (putative F-box protein At1g65770 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.3 bits (347), Expect = 6.9e-29
Identity = 91/219 (41.55%), Postives = 109/219 (49.77%), Query Frame = 0


Query: 10  RYSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLHSRLRFPS---LYPK 69
           ++SDLP E+L +IGK ++T  D LRFRSVCRSWRASLP    V     L  PS       
Sbjct: 7   QWSDLPPEILPIIGKSLETYIDVLRFRSVCRSWRASLPPFNVVSSLLPLDLPSPIFTADH 66

Query: 70  GSDIFLTRRIIYRFQTMPSSPST------------WLA---------------------- 129
            +D  L RR+IYR   +    S+            WLA                      
Sbjct: 67  LTDALLIRRVIYRLSPLDHQHSSDSASSSSFAAEGWLAKVESTKLGTMRFLHPLSTRYVK 126

Query: 130 -------KEANWLNLRFEEVATSYWLESRTIGYN---LYDQITKVVLSPDYIWTDRSTCT 182
                  KE N L+ R  EVA SY     T+GY    L  +ITKVV+ PD  W D   CT
Sbjct: 127 YDNEVFRKEVNLLDFRIYEVAKSY-----TLGYTNGALVPRITKVVMFPDCPWIDVKYCT 186

[Close]

BLAST of Sed0017800 vs. NCBI nr
Match: XP_022977302.1 (putative F-box protein At1g65770 [Cucurbita maxima])

HSP 1 Score: 138.3 bits (347), Expect = 6.9e-29
Identity = 91/214 (42.52%), Postives = 113/214 (52.80%), Query Frame = 0


Query: 10  RYSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLHSRLRFPSL------ 69
           R+SDLP EL  LIGKR++T  D LRFRSVC+SWRASLP+   +   S L+FPS       
Sbjct: 7   RWSDLPPELCLLIGKRLETYIDVLRFRSVCKSWRASLPRFDGISPLSPLQFPSPTKARRG 66

Query: 70  YPKGSDIFLTRRIIYRF------QTMPSSPSTWLA------------------------- 129
           Y       L RRIIY F      QT  SS S                             
Sbjct: 67  YLASGHTLLHRRIIYCFSPLHHHQTSNSSSSRLFTKDKSTKLGTIRFVDLFSNLLVVLDD 126

Query: 130 ----KEANWLNLRFEEVATSYWLESRTIGYNLYDQITKVVLSPDYIWTDRSTCTIVAIYS 183
               K+ N+L+ R  EVA SY L+    G  L  +ITKV++ PD   TD  T  IVA+Y 
Sbjct: 127 ETFRKDVNFLDFRIYEVAKSYALQYTRGG--LVSRITKVIMYPDSGLTDLRTRIIVAVYG 186

[Close]

BLAST of Sed0017800 vs. NCBI nr
Match: KAG6594746.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.9 bits (346), Expect = 9.0e-29
Identity = 91/219 (41.55%), Postives = 109/219 (49.77%), Query Frame = 0


Query: 10  RYSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLHSRLRFPS---LYPK 69
           ++SDLP E+L +IGK ++T  D LRFRSVCRSWRASLP    V     L  PS       
Sbjct: 7   QWSDLPPEILPIIGKSLETYIDVLRFRSVCRSWRASLPPFNIVSSLLPLDLPSPIFTADH 66

Query: 70  GSDIFLTRRIIYRFQTMPSSPST------------WLA---------------------- 129
            +D  L RR+IYR   +    S+            WLA                      
Sbjct: 67  LTDALLIRRVIYRLSPLDHQHSSDSASSSSFAAEGWLAKVESTKLGTMRFLHPLSTRYVK 126

Query: 130 -------KEANWLNLRFEEVATSYWLESRTIGYN---LYDQITKVVLSPDYIWTDRSTCT 182
                  KE N L+ R  EVA SY     T+GY    L  +ITKVV+ PD  W D   CT
Sbjct: 127 YDNEVFRKEVNLLDFRIYEVAKSY-----TLGYTNGALVPRITKVVMFPDCPWIDVKYCT 186

[Close]

BLAST of Sed0017800 vs. ExPASy Swiss-Prot
Match: Q9LVG8 (Putative F-box protein At5g60060 OS=Arabidopsis thaliana OX=3702 GN=At5g60060 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.0e-08
Identity = 60/227 (26.43%), Postives = 93/227 (40.97%), Query Frame = 0


Query: 1   MENSQSWARRYSDLPRELLSLIGKRID-TSGDALR---FRSVCRSWRASLPKSKAVLLHS 60
           M++S     ++SDLP ++L LI  R+D  S D +     RSVC +WR SLP S     ++
Sbjct: 1   MDSSSLLPSQWSDLPLDILELISDRLDHDSSDTIHLLCLRSVCATWRLSLPLSNK---NN 60

Query: 61  RL-RFPSLYP------KGSDIF-LTRRIIYRFQTMPSSPSTWLAK--------------- 120
           RL +FP   P        S  F L +  +Y+ +  P +P T L K               
Sbjct: 61  RLSKFPKYLPFWSSSSSSSGFFTLKQSNVYKLEA-PLNPRTCLVKLQETTPGIMRVLDLF 120

Query: 121 --------------EANWLNLRFEEVATSYWLESRTIGYNLYDQITKVVLSPDYIWTDRS 180
                         + +        V  +Y +E    G         +      I +   
Sbjct: 121 SNDRICFLPENFPSKIDLQEFHVRLVRRTYRMEYANNGGGAVPCFWSLHSDKVVILSSGE 180

Query: 181 TCTIVAIYSKGTLGFAKY-KGESWRRIDDH-NFDYDDVIVYKGKICL 185
              I+AI+S G LGF K    E W+ +D+  N  Y+D+++YK   C+
Sbjct: 181 DSAIIAIHSGGKLGFLKSGNDEKWKILDNSWNVIYEDIMLYKDNRCI 223

[Close]

BLAST of Sed0017800 vs. ExPASy Swiss-Prot
Match: B3H6C3 (F-box protein At4g35733 OS=Arabidopsis thaliana OX=3702 GN=At4g35733 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.0e-06
Identity = 53/206 (25.73%), Postives = 82/206 (39.81%), Query Frame = 0


Query: 6   SWARRYSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLH---SRLRFPS 65
           S A  +SDLP ELL  I   + +  + LRFRS+C+++R+++   K  L H   +R R  S
Sbjct: 2   SEATVWSDLPGELLDHIANGLFSKVELLRFRSICKTFRSAVDSDKNFLDHLKRNRRRLLS 61

Query: 66  LYPKGSDIFLTRRIIYRFQTMPSSPSTWLAK---------------------EANWLNLR 125
            Y  G    L+    YR          WL K                     +++   L 
Sbjct: 62  PYSTGKTCSLSPAAFYRVVLSSYPDKGWLIKLQDAYVSSQKQLLSPLSRFSIKSSGKTLD 121

Query: 126 FEEVATSYWLESRTIGYNLYD------QITKVVLSPDYIWTDRSTCTIVAIYSKGTLGFA 181
             E   S   +S  + Y  Y+         +VVL+ D+++       IV  Y K  L  +
Sbjct: 122 LLEFTVSEIHQSYDVEYLYYNSTRASFNFARVVLAEDFVF-------IVDNYKKIWLCNS 181

[Close]

BLAST of Sed0017800 vs. ExPASy Swiss-Prot
Match: Q9LS04 (Putative F-box protein At3g25750 OS=Arabidopsis thaliana OX=3702 GN=At3g25750 PE=4 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 4.2e-05
Identity = 30/76 (39.47%), Postives = 41/76 (53.95%), Query Frame = 0


Query: 11 YSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLHSRLRFPSLYPKGSDI 70
          +SDLP ELL LI  R  ++ D LR RS C+SWR+++  SK  L     R+     K    
Sbjct: 6  WSDLPEELLDLIANRYSSNIDVLRIRSTCKSWRSAVAMSKERLQFRFERYLPTSNKKIKA 65

Query: 71 FLTRRIIYRFQTMPSS 87
           L+    +R  T+PSS
Sbjct: 66 HLSPTTFFRI-TLPSS 80

[Close]

BLAST of Sed0017800 vs. ExPASy Swiss-Prot
Match: Q9SHX9 (Putative F-box protein At1g65770 OS=Arabidopsis thaliana OX=3702 GN=At1g65770 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.2e-05
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 11 YSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKS---------KAVLLHSRLRFP 70
          +S LP +LL++I  R+ ++ +  RFRS+CRSWR+S+P +           +LL+     P
Sbjct: 4  WSTLPVDLLNMIAGRLFSNIELKRFRSICRSWRSSVPGAGKKNPFRTRPLILLNPNPNKP 63

Query: 71 SLYPKGSDIFLTRRIIYRFQTMPSSPST-WLAK 94
              +    FL+R   +R  T+ SSPS  WL K
Sbjct: 64 LTDHRRRGEFLSRSAFFRV-TLSSSPSQGWLIK 95

[Close]

BLAST of Sed0017800 vs. ExPASy Swiss-Prot
Match: Q3EBZ2 (F-box protein SKIP23 OS=Arabidopsis thaliana OX=3702 GN=SKIP23 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 11 YSDLPRELLSLIGKRIDTSGDALRFRSVCRSWR-ASLPKSKAVLLHSRLRFPSLYPKGSD 70
          +S LP++LL LI K +++S D ++FRSVC SWR A+ PKS     H     P L   G  
Sbjct: 4  WSTLPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAEPKSPLPTHH----LPILPDNGGS 63

Query: 71 IFLTRRIIYR 80
          +F    + +R
Sbjct: 64 LFPDSAVGFR 69

[Close]

BLAST of Sed0017800 vs. ExPASy TrEMBL
Match: A0A6J1II28 (putative F-box protein At1g65770 OS=Cucurbita maxima OX=3661 GN=LOC111477664 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.3e-29
Identity = 91/214 (42.52%), Postives = 113/214 (52.80%), Query Frame = 0


Query: 10  RYSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLHSRLRFPSL------ 69
           R+SDLP EL  LIGKR++T  D LRFRSVC+SWRASLP+   +   S L+FPS       
Sbjct: 7   RWSDLPPELCLLIGKRLETYIDVLRFRSVCKSWRASLPRFDGISPLSPLQFPSPTKARRG 66

Query: 70  YPKGSDIFLTRRIIYRF------QTMPSSPSTWLA------------------------- 129
           Y       L RRIIY F      QT  SS S                             
Sbjct: 67  YLASGHTLLHRRIIYCFSPLHHHQTSNSSSSRLFTKDKSTKLGTIRFVDLFSNLLVVLDD 126

Query: 130 ----KEANWLNLRFEEVATSYWLESRTIGYNLYDQITKVVLSPDYIWTDRSTCTIVAIYS 183
               K+ N+L+ R  EVA SY L+    G  L  +ITKV++ PD   TD  T  IVA+Y 
Sbjct: 127 ETFRKDVNFLDFRIYEVAKSYALQYTRGG--LVSRITKVIMYPDSGLTDLRTRIIVAVYG 186

[Close]

BLAST of Sed0017800 vs. ExPASy TrEMBL
Match: A0A6J1KNW7 (putative F-box protein At1g65770 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497348 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 7.5e-29
Identity = 91/219 (41.55%), Postives = 109/219 (49.77%), Query Frame = 0


Query: 10  RYSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLHSRLRFPS---LYPK 69
           ++SDLP E+L +IGK ++T  D LRFRSVCRSWRASLP    V     L  PS       
Sbjct: 7   QWSDLPPEILPIIGKSLETYIDVLRFRSVCRSWRASLPPFNIVSSLLPLDLPSPIFTADH 66

Query: 70  GSDIFLTRRIIYRFQTMPSSPST------------WLA---------------------- 129
            +D  L RR+IYR   +    S+            WLA                      
Sbjct: 67  LTDALLIRRVIYRLSPLDHQHSSDSASSSSFAAEGWLAKVESTKLGTMRFLHPLSTRYVK 126

Query: 130 -------KEANWLNLRFEEVATSYWLESRTIGY---NLYDQITKVVLSPDYIWTDRSTCT 182
                  KE N L+ R  EVA SY     T+GY    L  +ITKVV+ PD  W D   CT
Sbjct: 127 YDNEVFRKEVNLLDFRIYEVAKSY-----TLGYINGALVPRITKVVMFPDCPWIDVKYCT 186

[Close]

BLAST of Sed0017800 vs. ExPASy TrEMBL
Match: A0A5A7SHJ7 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00810 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 9.7e-29
Identity = 96/227 (42.29%), Postives = 112/227 (49.34%), Query Frame = 0


Query: 10  RYSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLHSRLRFPS---LYPK 69
           R+SDLP EL  +IGKR+DT  D LRFRSVCRSWRASLP   AV     L  PS       
Sbjct: 7   RWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSWRASLPPFNAVSPLLPLDLPSPVFAADH 66

Query: 70  GSDIFLTRRIIYRF--------------QTMPSSPST------WLA-------------- 129
            +D FL RRIIYR                T  SS S+      WLA              
Sbjct: 67  LTDAFLIRRIIYRLSPLDHHKTFSFASSSTSSSSSSSYCAAEGWLAKVESTKLGKMRFLH 126

Query: 130 ---------------KEANWLNLRFEEVATSYWLESRTIGY---NLYDQITKVVLSPDYI 182
                          KE N L+    EVA SY     T+GY   +   +ITKVV+ PD  
Sbjct: 127 PLSTRYAKCNSDLFRKEVNLLDFGIYEVAKSY-----TLGYTNGSPVPRITKVVMFPDSP 186

[Close]

BLAST of Sed0017800 vs. ExPASy TrEMBL
Match: A0A1S4DT77 (putative F-box protein At1g65770 OS=Cucumis melo OX=3656 GN=LOC103485361 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 9.7e-29
Identity = 96/227 (42.29%), Postives = 112/227 (49.34%), Query Frame = 0


Query: 10  RYSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLHSRLRFPS---LYPK 69
           R+SDLP EL  +IGKR+DT  D LRFRSVCRSWRASLP   AV     L  PS       
Sbjct: 7   RWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSWRASLPPFNAVSPLLPLDLPSPVFAADH 66

Query: 70  GSDIFLTRRIIYRF--------------QTMPSSPST------WLA-------------- 129
            +D FL RRIIYR                T  SS S+      WLA              
Sbjct: 67  LTDAFLIRRIIYRLSPLDHHKTFSFASSSTSSSSSSSYCAAEGWLAKVESTKLGKMRFLH 126

Query: 130 ---------------KEANWLNLRFEEVATSYWLESRTIGY---NLYDQITKVVLSPDYI 182
                          KE N L+    EVA SY     T+GY   +   +ITKVV+ PD  
Sbjct: 127 PLSTRYAKCNSDLFRKEVNLLDFGIYEVAKSY-----TLGYTNGSPVPRITKVVMFPDSP 186

[Close]

BLAST of Sed0017800 vs. ExPASy TrEMBL
Match: A0A6J1EGF3 (putative F-box protein At1g65770 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433939 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 90/219 (41.10%), Postives = 109/219 (49.77%), Query Frame = 0


Query: 10  RYSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLHSRLRFPS---LYPK 69
           ++SDLP E+L +IGK ++T  + LRFRSVCRSWRASLP    V     L  PS       
Sbjct: 7   QWSDLPPEILPIIGKSLETYIEVLRFRSVCRSWRASLPPFNIVSSLLPLDLPSPIFTADH 66

Query: 70  GSDIFLTRRIIYRFQTMPSSPST------------WLA---------------------- 129
            +D  L RR+IYR   +    S+            WLA                      
Sbjct: 67  LTDALLIRRVIYRLSPLDHQHSSDSASSSSFAAEGWLAKVESTKLGTMRFLHPLSTRYVK 126

Query: 130 -------KEANWLNLRFEEVATSYWLESRTIGYN---LYDQITKVVLSPDYIWTDRSTCT 182
                  KE N L+ R  EVA SY     T+GY    L  +ITKVV+ PD  W D   CT
Sbjct: 127 YDNEVFRKEVNLLDFRIYEVAKSY-----TLGYTNGALVPRITKVVMFPDCPWIDVKYCT 186

[Close]

BLAST of Sed0017800 vs. TAIR 10
Match: AT5G60060.1 (Protein of unknown function (DUF295) )

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-09
Identity = 60/227 (26.43%), Postives = 93/227 (40.97%), Query Frame = 0


Query: 1   MENSQSWARRYSDLPRELLSLIGKRID-TSGDALR---FRSVCRSWRASLPKSKAVLLHS 60
           M++S     ++SDLP ++L LI  R+D  S D +     RSVC +WR SLP S     ++
Sbjct: 1   MDSSSLLPSQWSDLPLDILELISDRLDHDSSDTIHLLCLRSVCATWRLSLPLSNK---NN 60

Query: 61  RL-RFPSLYP------KGSDIF-LTRRIIYRFQTMPSSPSTWLAK--------------- 120
           RL +FP   P        S  F L +  +Y+ +  P +P T L K               
Sbjct: 61  RLSKFPKYLPFWSSSSSSSGFFTLKQSNVYKLEA-PLNPRTCLVKLQETTPGIMRVLDLF 120

Query: 121 --------------EANWLNLRFEEVATSYWLESRTIGYNLYDQITKVVLSPDYIWTDRS 180
                         + +        V  +Y +E    G         +      I +   
Sbjct: 121 SNDRICFLPENFPSKIDLQEFHVRLVRRTYRMEYANNGGGAVPCFWSLHSDKVVILSSGE 180

Query: 181 TCTIVAIYSKGTLGFAKY-KGESWRRIDDH-NFDYDDVIVYKGKICL 185
              I+AI+S G LGF K    E W+ +D+  N  Y+D+++YK   C+
Sbjct: 181 DSAIIAIHSGGKLGFLKSGNDEKWKILDNSWNVIYEDIMLYKDNRCI 223

[Close]

BLAST of Sed0017800 vs. TAIR 10
Match: AT3G25750.1 (F-box family protein with a domain of unknown function (DUF295) )

HSP 1 Score: 55.5 bits (132), Expect = 5.5e-08
Identity = 52/189 (27.51%), Postives = 81/189 (42.86%), Query Frame = 0


Query: 11  YSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLHSRLRFPSLYPKGSDI 70
           +SDLP ELL LI  R  ++ D LR RS C+SWR+++  SK  L     R+     K    
Sbjct: 6   WSDLPEELLDLIANRYSSNIDVLRIRSTCKSWRSAVAMSKERLQFRFERYLPTSNKKIKA 65

Query: 71  FLTRRIIYRFQTMPSS--PSTWLAKEAN----------WLNLRFEEVATSY-WLESRTIG 130
            L+    +R  T+PSS     WL +                L  E +  S+  L+   +G
Sbjct: 66  HLSPTTFFRI-TLPSSCPNKGWLVRTRQASKMYRKITLLCPLSGERITRSHQTLDLLKVG 125

Query: 131 YNLYDQITKVV----LSPDYIWTDRSTCTIVAIYSKGTLGFAKYKGESWRRIDDHNFDYD 183
            +   Q  ++     L  + I  D     I + Y K +         SW +I +   D+ 
Sbjct: 126 VSEIRQSYEIQIFDGLKDEKIPLDSE---IFSNYIKNSDKIPSEGSRSWTKIKNQVEDFS 185

[Close]

BLAST of Sed0017800 vs. TAIR 10
Match: AT4G35733.1 (F-box family protein with a domain of unknown function (DUF295) )

HSP 1 Score: 52.8 bits (125), Expect = 3.6e-07
Identity = 53/206 (25.73%), Postives = 82/206 (39.81%), Query Frame = 0


Query: 6   SWARRYSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKSKAVLLH---SRLRFPS 65
           S A  +SDLP ELL  I   + +  + LRFRS+C+++R+++   K  L H   +R R  S
Sbjct: 2   SEATVWSDLPGELLDHIANGLFSKVELLRFRSICKTFRSAVDSDKNFLDHLKRNRRRLLS 61

Query: 66  LYPKGSDIFLTRRIIYRFQTMPSSPSTWLAK---------------------EANWLNLR 125
            Y  G    L+    YR          WL K                     +++   L 
Sbjct: 62  PYSTGKTCSLSPAAFYRVVLSSYPDKGWLIKLQDAYVSSQKQLLSPLSRFSIKSSGKTLD 121

Query: 126 FEEVATSYWLESRTIGYNLYD------QITKVVLSPDYIWTDRSTCTIVAIYSKGTLGFA 181
             E   S   +S  + Y  Y+         +VVL+ D+++       IV  Y K  L  +
Sbjct: 122 LLEFTVSEIHQSYDVEYLYYNSTRASFNFARVVLAEDFVF-------IVDNYKKIWLCNS 181

[Close]

BLAST of Sed0017800 vs. TAIR 10
Match: AT1G65770.1 (ascorbic acid mannose pathway regulator 1 )

HSP 1 Score: 48.9 bits (115), Expect = 5.1e-06
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 11 YSDLPRELLSLIGKRIDTSGDALRFRSVCRSWRASLPKS---------KAVLLHSRLRFP 70
          +S LP +LL++I  R+ ++ +  RFRS+CRSWR+S+P +           +LL+     P
Sbjct: 4  WSTLPVDLLNMIAGRLFSNIELKRFRSICRSWRSSVPGAGKKNPFRTRPLILLNPNPNKP 63

Query: 71 SLYPKGSDIFLTRRIIYRFQTMPSSPST-WLAK 94
              +    FL+R   +R  T+ SSPS  WL K
Sbjct: 64 LTDHRRRGEFLSRSAFFRV-TLSSSPSQGWLIK 95

[Close]

BLAST of Sed0017800 vs. TAIR 10
Match: AT2G17030.1 (F-box family protein with a domain of unknown function (DUF295) )

HSP 1 Score: 48.1 bits (113), Expect = 8.8e-06
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 11 YSDLPRELLSLIGKRIDTSGDALRFRSVCRSWR-ASLPKSKAVLLHSRLRFPSLYPKGSD 70
          +S LP++LL LI K +++S D ++FRSVC SWR A+ PKS     H     P L   G  
Sbjct: 4  WSTLPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAEPKSPLPTHH----LPILPDNGGS 63

Query: 71 IFLTRRIIYR 80
          +F    + +R
Sbjct: 64 LFPDSAVGFR 69

The following BLAST results are available for this feature:

BLAST of Sed0017800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881861.1	1.4e-29	41.81	putative F-box protein At1g65770 [Benincasa hispida]	[more]
XP_023544298.1	4.0e-29	42.06	putative F-box protein At1g65770 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023...	[more]
XP_023518907.1	6.9e-29	41.55	putative F-box protein At1g65770 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022977302.1	6.9e-29	42.52	putative F-box protein At1g65770 [Cucurbita maxima]	[more]
KAG6594746.1	9.0e-29	41.55	putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0017800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVG8	7.0e-08	26.43	Putative F-box protein At5g60060 OS=Arabidopsis thaliana OX=3702 GN=At5g60060 PE...	[more]
B3H6C3	5.0e-06	25.73	F-box protein At4g35733 OS=Arabidopsis thaliana OX=3702 GN=At4g35733 PE=2 SV=1	[more]
Q9LS04	4.2e-05	39.47	Putative F-box protein At3g25750 OS=Arabidopsis thaliana OX=3702 GN=At3g25750 PE...	[more]
Q9SHX9	7.2e-05	35.48	Putative F-box protein At1g65770 OS=Arabidopsis thaliana OX=3702 GN=At1g65770 PE...	[more]
Q3EBZ2	1.2e-04	40.00	F-box protein SKIP23 OS=Arabidopsis thaliana OX=3702 GN=SKIP23 PE=1 SV=1	[more]

BLAST of Sed0017800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1II28	3.3e-29	42.52	putative F-box protein At1g65770 OS=Cucurbita maxima OX=3661 GN=LOC111477664 PE=...	[more]
A0A6J1KNW7	7.5e-29	41.55	putative F-box protein At1g65770 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A5A7SHJ7	9.7e-29	42.29	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A1S4DT77	9.7e-29	42.29	putative F-box protein At1g65770 OS=Cucumis melo OX=3656 GN=LOC103485361 PE=4 SV...	[more]
A0A6J1EGF3	1.3e-28	41.10	putative F-box protein At1g65770 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Sed0017800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60060.1	5.0e-09	26.43	Protein of unknown function (DUF295)	[more]
AT3G25750.1	5.5e-08	27.51	F-box family protein with a domain of unknown function (DUF295)	[more]
AT4G35733.1	3.6e-07	25.73	F-box family protein with a domain of unknown function (DUF295)	[more]
AT1G65770.1	5.1e-06	35.48	ascorbic acid mannose pathway regulator 1	[more]
AT2G17030.1	8.8e-06	40.00	F-box family protein with a domain of unknown function (DUF295)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 14..55 e-value: 0.0052 score: 26.0
None	No IPR available	GENE3D	1.20.1280.50		coord: 11..51 e-value: 2.6E-5 score: 25.9
None	No IPR available	PANTHER	PTHR47123:SF6	ASCORBIC ACID MANNOSE PATHWAY REGULATOR-RELATED	coord: 91..183 coord: 4..93
None	No IPR available	PANTHER	PTHR47123	F-BOX PROTEIN SKIP23	coord: 91..183 coord: 4..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017800.1	Sed0017800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding