Sed0017796 (gene) Chayote v1

Overview


Name	Sed0017796
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L24
Location	LG05: 45118136 .. 45122099 (-)
RNA-Seq Expression	Sed0017796
Synteny	Sed0017796

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGGTCGTAACCTGAAAATACACTCAAAGCAGCAAACGAACTACGCCGGTGGCACCATTTATTGAGCAAAGGTTTTCAAGTTAGGAACTTGGCCACAAATTCCTCATTCTTAGGTTAAAATTTCTATGTTTTTCTATGTGATTGATTCTTCATATTTGCTTGAATGTCTCTGAAGGATTTGTTTTCTTGGAGAATTAGCGTTTCTCGTGCATTTCTTAATTTGCTTTCTGGGTTGATTCCTAATCCAAAGATATGTTTTGGTGTCACAACTTGGAATATCTTGTGTTTGAATACTTGCAGAGTGTTCAATTTAATGGATGTATTGAAATTTAAATTCATGTTCGTATTCTTTCCACAACCCTTGATTGGAATGGAAATGCTTCGTCGCCATTTTTGTTTAGAGTTTATGCACACATGGGGTTTCTTTATCTTTTGGTGATCTGACCAATGAACCTAGCCGTGTAGGAATTGCTTGGGCTTTTCGCTTAGTATCTTTTATCCGTGTTCCATGTTGCAGTGGAAGTGTAGAAGCTTTTGATCTGAATGATTAATGGCAGATTGTTGGGGTAACTTGTGCAGATATTAGTAGCAGTAGCTTTTGTGTATTTGTGTTACTTTCAAATGGGTTGGAAGGCTGCTCAGAAGCTTATTAGGCATTGGAAAATTCTTAGAGGAGATAATGTAAGAGAAATTTTTAAAGAAAGTGGGCTATTTCCTTCTATTACTGGGTTTTTTTTTTCCTTATGATGATCTTGCTTGTATTGATCGTAGGTCATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTTTGGTTAAGCGTGTGATTCGCACCCAAAACCGTGTTATTGTCGAGGGTAAAAACCTGGTAAGAAACTGGTTGCCATTTTTTTTATTGCTAGGTTGTAAGTTGGAGCTTTTTTGCTTCCCTATACTTGGACAATTACAGGCCAGAGTTGAAGTTTCTCGTTTTCGATTGCTGTGCTTGGCCCTTTTAGGCTCACATTTGATAACCTAGCCTTGGCAACTGAGTTGTGGAAATGACTCGCTCGCTCGCTTTGATTTAACGTCAAGTTTTTCCCGTCCTGATATCCTTCTCATTCTGTGTATGAGTGCCTGCTACCTCATGAACATTGGTAAAGTCAATTTTTGAGAGTTTCAAAAAAAGGGTGAATACTGAGCTCAAATGACCTATGGAACTGAATTTATACTTGACCTTCGCCACTCCCTCAGATTCTTTAGTCTGCCTATATTCAAGGGTAGTAGGATGCAATTAAGTGGAAAAAGCCTTTTTATTCTTTCCTTTATCGTTTATTTTACCAACTTGTGTAGTCTACCGTTGCAGCTGTCCTAATGAATGCTATTTTATTGTTTCAATAGTTGTTTATGAGTCCTGTTGTTTGTATGGTTCCTCACCTCAACTGCCTTTGAATCTCGTCATTTTTTTTTATGATTTCAGCATTTGCACATAACATGAGTGTGTAAGTTTTATTATCTGTCATTCACCTTTCTATGCCTCATACAGGTGAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCTCTTCATGTATCCAATGTTCAAGTTGTTGATCCTGCAACAGGGTTTGGACACTACCCACGACTGCTATTGGGTTGTGATGTTTTTGCCTTGAACTAGAGCATTGACAGACATTGTTCTTTTGCAGGAAACCTGTTAAGGTTGGTACTAGATATCTTGAAGATGGTTCTAAAGTGCGAGTTTCAAGAGGAATTGGAGCCTCAGGTTCAATAATCCCTCGTCCAGAGATCTTAAAGATAAGGACTACACCCAGACCTACAGTTGGTACTGATCTAAAGCCTATGACGGGTTTTATTTTATATTTATTTACATTGTTGTTTTAGTTGCTAAATTTATTTGCTTTGCGTGCTTCTGTGGATTCCTAATCCTATGTAGTTGGGCTTGGGCGTTTCATTTAGGATTCTATGTTATTCTCTTTTCTTGTTGATTTTTCTCACACTATTAAAAAAAACTATTTTTTTCTTACACTATCACACATAAATTTGGATGTACTATTCTTATTTTGAAGAGCTATGGTTTGATCTGAATCTTATCTTAGCTATAGACATGGATGAATTCTCTTCTTTGCTCGATCTACAATGTGGGTGCGGATGGGGTGGAGGGAGCCAGCCTGCCATTTCTTTGGGTGCAAGGCTTTGAACTTGTTTTGGCATATCATCAAGGACAGTGTTTATAAGGGGATAGCCACTGAGATACCCTTGAATTCTACTATCAATACCTCTCGAGACTATCCTACTCAGATCATCCGTAACAAGTAAGAAGAGAAAATGAGACAAAAGATCACCCAGCCTAAGATCTCTTGTTGCAAAAATCCTCCCTCCTTGTTTACCTTATAAAATTTATCTCTTTCTTTGAGAAATTTTCAGGTCCGGAAATTAGCATAAGGCACAATGCCTCAAAGTGAGAGACGACTGAAAGACGAGGACCAAGTGAAGCAAGGCCCAACGAATAAATATATAACAAAATAATATATATTCTTGTTCTCATAAAATGTCAAATTCTTTTTTTTTGAAACAAGGGTAACCACGCCCGTCCCTAGGCCAGACACCGGGAGACATCGAAGGATTAATGTCACAGTTGAGTCTTCGAACCTCATAAAATGTCAAATTGTTAATATCAATATATGGTACAACCATCGTGAAGTGGCATTGTGGTCACGAAAGGGTTTTAAGTAATCAAGAGGTGATGGTTTAATTCATGGTGGCCACCTACCTAACAATTAATTTCCTACGGGTTTTTTTGACATCCAAATGTTTTAGGGTTAGGTAGTATGGCCCATGACAATAGTTGAGATGTACGCAAATTGGCCCGAATTAGCCATAAATAGCAAAGAAAAAAATCAATGTACGGTACAAGTTTTGTAGAAGAACTTAAAAAACTTCTCTTTAATTTCTTTCTATCAACATTCTCTCCAAAAAAAACCTTAGCCCACAAAATCTCCCCTTCCTCCGGCGTCGCCTCACCAGCGTTGGGGGGAACCTTCGATGCACCCCACCAAGACGATGATCACTCCTCCCCTTCTTCTTTCCTCTTCCCGTGATCTCTTTCAAAGAGCATCTCCCCATTGCAAACCAAGCATCGACAAACAACAAACTTGACCTGAAGGACACCGAGAACGTCAAATCTGCAATGACCAACCACACCTTGAGTGTTCTCAGACAACTATGACATATTGGTGCTCGAAAATGTCCGATCAGTCGTTTGTTTGTGGCAATACAATATTGAGATATGGGGCAACAGTTTCTTCCTTTGTCTATGGACATAGCTAACACTCCATTAGTGAAACACGTAAACTGCGTATTGTTTTTCTTGTTCTTTTATTATTTGCTTGATGTATATTTTACTTTCCATGTATCTCAATCGCTCCAAGCTAGTACTCTAGGTCTGGTTTACATGGGCTTAATAGGCGACCCCATTGTATGGAATTCAATATAGTTCTATAAGTTTACCTATGAAGTTCTTCCTGAAGAAATCTTTCTATGTTATCTCATTTTGATTTGATTGTATTTGTTGATTTGTAGCTGGTCCCAAGGATACTTCAATGGATGTGGTGCTAGAGAAAACTTATGATGCTAAAATAGGGAAGGGCATGCCTGACCTTTAGAAGTTTCTTCAATTCAATTCAGAAGACATGCTACTATTAGGTTGGAATATATCCAGAACCTGATGATGCATCCTTTATTGTAGTTGGTGGAAACTTGTATTTCATTTCTTCTTTTTGTTGGAGAAAGCATTTCCTTGTTTGTTTTTGTACTTCAATTCATGCATGCTTATGAAGAAACAACTCTGATCCTTTGATGGTTATGAGAAAAAGGATATAATTTTGTACTAAATTTTTTGGTGTTAGATTTACGAGTCAATATGTTTGCTCTTTCTCA

mRNA sequence

TTTCGGTCGTAACCTGAAAATACACTCAAAGCAGCAAACGAACTACGCCGGTGGCACCATTTATTGAGCAAAGGTTTTCAAGTTAGGAACTTGGCCACAAATTCCTCATTCTTAGATATTAGTAGCAGTAGCTTTTGTGTATTTGTGTTACTTTCAAATGGGTTGGAAGGCTGCTCAGAAGCTTATTAGGCATTGGAAAATTCTTAGAGGAGATAATGTCATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTTTGGTTAAGCGTGTGATTCGCACCCAAAACCGTGTTATTGTCGAGGGTAAAAACCTGGTGAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCTCTTCATGTATCCAATGTTCAAGTTGTTGATCCTGCAACAGGGAAACCTGTTAAGGTTGGTACTAGATATCTTGAAGATGGTTCTAAAGTGCGAGTTTCAAGAGGAATTGGAGCCTCAGGTTCAATAATCCCTCGTCCAGAGATCTTAAAGATAAGGACTACACCCAGACCTACAGTTGCTGGTCCCAAGGATACTTCAATGGATGTGGTGCTAGAGAAAACTTATGATGCTAAAATAGGGAAGGGCATGCCTGACCTTTAGAAGTTTCTTCAATTCAATTCAGAAGACATGCTACTATTAGGTTGGAATATATCCAGAACCTGATGATGCATCCTTTATTGTAGTTGGTGGAAACTTGTATTTCATTTCTTCTTTTTGTTGGAGAAAGCATTTCCTTGTTTGTTTTTGTACTTCAATTCATGCATGCTTATGAAGAAACAACTCTGATCCTTTGATGGTTATGAGAAAAAGGATATAATTTTGTACTAAATTTTTTGGTGTTAGATTTACGAGTCAATATGTTTGCTCTTTCTCA

Coding sequence (CDS)

ATGGGTTGGAAGGCTGCTCAGAAGCTTATTAGGCATTGGAAAATTCTTAGAGGAGATAATGTCATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTTTGGTTAAGCGTGTGATTCGCACCCAAAACCGTGTTATTGTCGAGGGTAAAAACCTGGTGAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCTCTTCATGTATCCAATGTTCAAGTTGTTGATCCTGCAACAGGGAAACCTGTTAAGGTTGGTACTAGATATCTTGAAGATGGTTCTAAAGTGCGAGTTTCAAGAGGAATTGGAGCCTCAGGTTCAATAATCCCTCGTCCAGAGATCTTAAAGATAAGGACTACACCCAGACCTACAGTTGCTGGTCCCAAGGATACTTCAATGGATGTGGTGCTAGAGAAAACTTATGATGCTAAAATAGGGAAGGGCATGCCTGACCTTTAG

Protein sequence

MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL

Homology

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BLAST of Sed0017796 vs. NCBI nr
Match: XP_022146016.1 (uncharacterized protein LOC111015327 [Momordica charantia] >XP_022146017.1 uncharacterized protein LOC111015327 [Momordica charantia])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 152/159 (95.60%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETGL+KRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPATGKP KVG RYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL 160
           ILKIRTTPRPTVAGPKDT MDVVLEKTYDAK GKGMPDL
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL 159

[Close]

BLAST of Sed0017796 vs. NCBI nr
Match: XP_022931187.1 (uncharacterized protein LOC111437445 [Cucurbita moschata] >XP_022931188.1 uncharacterized protein LOC111437445 [Cucurbita moschata] >XP_022996037.1 uncharacterized protein LOC111491363 [Cucurbita maxima] >XP_022996038.1 uncharacterized protein LOC111491363 [Cucurbita maxima] >XP_023534268.1 uncharacterized protein LOC111795875 [Cucurbita pepo subsp. pepo] >XP_023534269.1 uncharacterized protein LOC111795875 [Cucurbita pepo subsp. pepo] >KAG6606417.1 hypothetical protein SDJN03_03734, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 308.9 bits (790), Expect = 2.5e-80
Identity = 151/159 (94.97%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETG++KRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPATGKP KVG RYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL 160
           ILKIRTTPRPTVAGPKDT MDVVLEK+YDAK GKGMPDL
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL 159

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BLAST of Sed0017796 vs. NCBI nr
Match: XP_038889029.1 (50S ribosomal protein L24 [Benincasa hispida] >XP_038889030.1 50S ribosomal protein L24 [Benincasa hispida])

HSP 1 Score: 303.9 bits (777), Expect = 8.1e-79
Identity = 149/159 (93.71%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETG++KRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDP TGKP KVG RYLEDGSKVRVSRGIGASGSIIPR E
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGSKVRVSRGIGASGSIIPRSE 120

Query: 121 ILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL 160
           ILKIRTTPRPTVAGPKDT MDVVLEKTYDAK GKGMP+L
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPEL 159

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BLAST of Sed0017796 vs. NCBI nr
Match: BBG96176.1 (KOW domain-containing protein [Prunus dulcis])

HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 145/159 (91.19%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWK+LRGDNVMIIRGKDKGETG++KRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 32  MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 91

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLH SNVQVVDP TGKPVKVG +YLEDG+KVRVSRG+GASGSIIPRPE
Sbjct: 92  QGHEGGIFTVEAPLHASNVQVVDPVTGKPVKVGVKYLEDGTKVRVSRGLGASGSIIPRPE 151

Query: 121 ILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL 160
           ILKIRTTPRPTVAGPKDT MDVVLEKTYDAK GKGMP+L
Sbjct: 152 ILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPEL 190

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BLAST of Sed0017796 vs. NCBI nr
Match: XP_016647287.1 (PREDICTED: 50S ribosomal protein L24-like [Prunus mume] >XP_016647288.1 PREDICTED: 50S ribosomal protein L24-like [Prunus mume] >XP_016647289.1 PREDICTED: 50S ribosomal protein L24-like [Prunus mume])

HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 145/159 (91.19%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWK+LRGDNVMIIRGKDKGETG++KRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLH SNVQVVDP TGKPVKVG +YLEDG+KVRVSRG+GASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHASNVQVVDPVTGKPVKVGVKYLEDGTKVRVSRGLGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL 160
           ILKIRTTPRPTVAGPKDT MDVVLEKTYDAK GKGMP+L
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPEL 159

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BLAST of Sed0017796 vs. ExPASy Swiss-Prot
Match: Q9ZCR6 (50S ribosomal protein L24 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=rplX PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22
Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V+II GK KG+ G V +V   +N V+V G NLVKKH K  +  EGGI T E+P
Sbjct: 5   KVKKGDEVVIITGKYKGKKGKVLKVFPEENTVVVSGVNLVKKHTKPNKMSEGGIITQESP 64

Query: 74  LHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSII 117
           +H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG II
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

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BLAST of Sed0017796 vs. ExPASy Swiss-Prot
Match: Q4UMR8 (50S ribosomal protein L24 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=rplX PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G + +V    ++VIV G NLVKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNLVKKHTKPNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSII 117
           +H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG II
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]

BLAST of Sed0017796 vs. ExPASy Swiss-Prot
Match: Q68W89 (50S ribosomal protein L24 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=rplX PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-22
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V+++ GK KG+ G V +V   +N VIV G NLVKKH K  +  EGGI T E+P
Sbjct: 5   KVKKGDEVIVVTGKYKGKKGKVLKVFIDENTVIVSGVNLVKKHTKPNKMSEGGIITKESP 64

Query: 74  LHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSII 117
           +H+SNV  +DP TG P KV  ++LEDGSKVR+++    SG II
Sbjct: 65  IHISNVAHIDPKTGNPTKVAFKFLEDGSKVRIAK---KSGEII 104

[Close]

BLAST of Sed0017796 vs. ExPASy Swiss-Prot
Match: C3PP96 (50S ribosomal protein L24 OS=Rickettsia africae (strain ESF-5) OX=347255 GN=rplX PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-22
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G + +V    ++VIV G N+VKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNVVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSII 117
           +H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG II
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]

BLAST of Sed0017796 vs. ExPASy Swiss-Prot
Match: Q92GX7 (50S ribosomal protein L24 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=rplX PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-22
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G + +V    ++VIV G N+VKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNVVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSII 117
           +H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG II
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]

BLAST of Sed0017796 vs. ExPASy TrEMBL
Match: A0A6J1CYB5 (uncharacterized protein LOC111015327 OS=Momordica charantia OX=3673 GN=LOC111015327 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.1e-81
Identity = 152/159 (95.60%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETGL+KRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPATGKP KVG RYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL 160
           ILKIRTTPRPTVAGPKDT MDVVLEKTYDAK GKGMPDL
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPDL 159

[Close]

BLAST of Sed0017796 vs. ExPASy TrEMBL
Match: A0A6J1K0T3 (uncharacterized protein LOC111491363 OS=Cucurbita maxima OX=3661 GN=LOC111491363 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80
Identity = 151/159 (94.97%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETG++KRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPATGKP KVG RYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL 160
           ILKIRTTPRPTVAGPKDT MDVVLEK+YDAK GKGMPDL
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL 159

[Close]

BLAST of Sed0017796 vs. ExPASy TrEMBL
Match: A0A6J1EXQ8 (uncharacterized protein LOC111437445 OS=Cucurbita moschata OX=3662 GN=LOC111437445 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80
Identity = 151/159 (94.97%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETG++KRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPATGKP KVG RYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL 160
           ILKIRTTPRPTVAGPKDT MDVVLEK+YDAK GKGMPDL
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL 159

[Close]

BLAST of Sed0017796 vs. ExPASy TrEMBL
Match: A0A4Y1QWF6 (KOW domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_004902 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.7e-79
Identity = 145/159 (91.19%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWK+LRGDNVMIIRGKDKGETG++KRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 32  MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 91

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLH SNVQVVDP TGKPVKVG +YLEDG+KVRVSRG+GASGSIIPRPE
Sbjct: 92  QGHEGGIFTVEAPLHASNVQVVDPVTGKPVKVGVKYLEDGTKVRVSRGLGASGSIIPRPE 151

Query: 121 ILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL 160
           ILKIRTTPRPTVAGPKDT MDVVLEKTYDAK GKGMP+L
Sbjct: 152 ILKIRTTPRPTVAGPKDTPMDVVLEKTYDAKTGKGMPEL 190

[Close]

BLAST of Sed0017796 vs. ExPASy TrEMBL
Match: A0A7J7BYW7 (KOW domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW22G00739 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 144/159 (90.57%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KL+RHWKILRGDNVMIIRGKDKGETGL+KRVIR+QNRVIV+GKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLVRHWKILRGDNVMIIRGKDKGETGLIKRVIRSQNRVIVDGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIPRPE 120
           +GHEGGIFTVEAP+HVSN+QVVDP TGKP KVGTRYLEDG+KVRVSRGIGASGSIIPRPE
Sbjct: 61  EGHEGGIFTVEAPIHVSNIQVVDPVTGKPCKVGTRYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL 160
           ILKIRTTPRPT AGPKDT MD+VLEKTYDAK GKGMPDL
Sbjct: 121 ILKIRTTPRPTAAGPKDTPMDLVLEKTYDAKSGKGMPDL 159

[Close]

BLAST of Sed0017796 vs. TAIR 10
Match: AT5G23535.1 (KOW domain-containing protein )

HSP 1 Score: 278.1 bits (710), Expect = 4.4e-75
Identity = 133/159 (83.65%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETG +KRVIR+QNRVIVEGKNL+KKHIK G
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIPRPE 120
             HEGGIFTVEAPLH SNVQVVDP TG+P KVG +YLEDG+KVRV+RG G SGSIIPRPE
Sbjct: 61  PDHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTGTSGSIIPRPE 120

Query: 121 ILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL 160
           ILKIR TPRPT AGPKDT M+ V E+TYDAK GKGMPDL
Sbjct: 121 ILKIRATPRPTTAGPKDTPMEFVWEQTYDAKTGKGMPDL 159

[Close]

BLAST of Sed0017796 vs. TAIR 10
Match: AT5G54600.1 (Translation protein SH3-like family protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.1e-12
Identity = 38/107 (35.51%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 18  GDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHV 77
           GD V +I G+DKG+ G V ++    + ++++  NL  KH+K + +G  G I  +EAP+H 
Sbjct: 76  GDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREEGEPGQIVKIEAPIHS 135

Query: 78  SNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIPRPEILK 124
           SNV +         +VG + LEDG KVR     G     I + ++LK
Sbjct: 136 SNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKLLK 182

[Close]

BLAST of Sed0017796 vs. TAIR 10
Match: AT5G54600.2 (Translation protein SH3-like family protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.0e-06
Identity = 35/106 (33.02%), Postives = 48/106 (45.28%), Query Frame = 0


Query: 18  GDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVS 77
           GD V +I G+DKG+ G V ++  T N  I                  G I  +EAP+H S
Sbjct: 76  GDTVKVISGRDKGKIGEVTKIF-THNSTI-----------------PGQIVKIEAPIHSS 135

Query: 78  NVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIPRPEILK 124
           NV +         +VG + LEDG KVR     G     I + ++LK
Sbjct: 136 NVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKLLK 163

The following BLAST results are available for this feature:

BLAST of Sed0017796 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146016.1	1.5e-80	95.60	uncharacterized protein LOC111015327 [Momordica charantia] >XP_022146017.1 uncha...	[more]
XP_022931187.1	2.5e-80	94.97	uncharacterized protein LOC111437445 [Cucurbita moschata] >XP_022931188.1 unchar...	[more]
XP_038889029.1	8.1e-79	93.71	50S ribosomal protein L24 [Benincasa hispida] >XP_038889030.1 50S ribosomal prot...	[more]
BBG96176.1	1.4e-78	91.19	KOW domain-containing protein [Prunus dulcis]	[more]
XP_016647287.1	1.4e-78	91.19	PREDICTED: 50S ribosomal protein L24-like [Prunus mume] >XP_016647288.1 PREDICTE...	[more]

BLAST of Sed0017796 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZCR6	1.1e-22	52.43	50S ribosomal protein L24 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 G...	[more]
Q4UMR8	1.5e-22	51.46	50S ribosomal protein L24 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) ...	[more]
Q68W89	1.9e-22	51.46	50S ribosomal protein L24 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) ...	[more]
C3PP96	2.5e-22	50.49	50S ribosomal protein L24 OS=Rickettsia africae (strain ESF-5) OX=347255 GN=rplX...	[more]
Q92GX7	2.5e-22	50.49	50S ribosomal protein L24 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) ...	[more]

BLAST of Sed0017796 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYB5	7.1e-81	95.60	uncharacterized protein LOC111015327 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1K0T3	1.2e-80	94.97	uncharacterized protein LOC111491363 OS=Cucurbita maxima OX=3661 GN=LOC111491363...	[more]
A0A6J1EXQ8	1.2e-80	94.97	uncharacterized protein LOC111437445 OS=Cucurbita moschata OX=3662 GN=LOC1114374...	[more]
A0A4Y1QWF6	6.7e-79	91.19	KOW domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_004902 PE=3 SV=1	[more]
A0A7J7BYW7	1.1e-78	90.57	KOW domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW22G...	[more]

BLAST of Sed0017796 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23535.1	4.4e-75	83.65	KOW domain-containing protein	[more]
AT5G54600.1	4.1e-12	35.51	Translation protein SH3-like family protein	[more]
AT5G54600.2	2.0e-06	33.02	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 14..41 e-value: 6.9E-6 score: 35.6
IPR005824	KOW	PFAM	PF00467	KOW	coord: 17..48 e-value: 1.1E-8 score: 34.7
IPR003256	Ribosomal protein L24	TIGRFAM	TIGR01079	TIGR01079	coord: 14..107 e-value: 3.9E-30 score: 102.4
IPR003256	Ribosomal protein L24	PFAM	PF17136	ribosomal_L24	coord: 51..108 e-value: 5.7E-22 score: 77.9
IPR003256	Ribosomal protein L24	PANTHER	PTHR12903	MITOCHONDRIAL RIBOSOMAL PROTEIN L24	coord: 1..150
IPR003256	Ribosomal protein L24	HAMAP	MF_01326_B	Ribosomal_L24_B	coord: 13..107 score: 18.530226
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 4..111 e-value: 2.5E-34 score: 119.6
None	No IPR available	PANTHER	PTHR12903:SF0	39S RIBOSOMAL PROTEIN L24, MITOCHONDRIAL	coord: 1..150
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 18..35
IPR041988	Ribosomal protein L26/L24, KOW domain	CDD	cd06089	KOW_RPL26	coord: 18..81 e-value: 5.05219E-22 score: 81.7922
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 10..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017796.1	Sed0017796.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome