Sed0017760 (gene) Chayote v1

Overview


Name	Sed0017760
Type	gene
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S20
Location	LG07: 8105716 .. 8107557 (+)
RNA-Seq Expression	Sed0017760
Synteny	Sed0017760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAATAGTCGCATCGTCCACATCAGTTGGATTCTTTCAGAGAGCGGCGAAGCAGAGATCTCCTTCTCAGCCTCCATCGCAGGTTCATTTTTTGAATTGTACAGCTTATTGATTCTTGTATTAAATATTAATGATGAGATTTCTGGATGTTTATAAGTTACTGGACTCATTTATCTATTTTCATCTCATGTGATCGAGTATTTTTGGCCAATTTCAAAATATTGTTGGGTTTGCTCGGCAGATTCGTTTTTGGAGATTTAAGATAACCGGAAGCATGGCGTACGCAGCGATGAAACCATCTAAGCCAGGCTTAGAAGATACGCAAGAACAAATCCACAAGATCAGGATTACTCTATCCTCCAAAAATGTTAAGAACCTTGAAAAAGGTATCGTTTTTTTTTTTGCAGCATTCTTATTATTGTTTCATTTTCTTGTTAAAATTGAGTGATATAACATTCAAATGATATTGGGTCTTCGTATATTTAGATTTTTGATAACTTTCTCAGGAATTAAGTAGGCTGCTTGCTTAATTTATTGCAATGCTCTGAAAATGAATCAGTTATCATATTATTAAAGGTGAATAAATAGTAGAGATATTATTGTTGGATAAAAGGGTTTTAGAATCCCTATTATGTATATATGCTGATCAATTGTAGGGTGCTAGTTTTTTAGGCTGCACGTCCTCATTCTCACATAACAATTACCATGTTCTTCAACATTTGGTTGTCTAGGAAACTTGTACTAGTTAGTTGGCGGTCACGGTTTGAAGCCGTAGCTTCTTTGTTCTTCAAATCTTCTTGGCCACTAGGCTAATCTATGCTAGTTTGTAGTTAAAAAGTTCCCAAATAACTTCTTAAAATTGTAGTATGTTTCTCTGTAGTGTGTTGTTAAATCTTCACTTTGTAGGCTTCAAGTGCCCAATTTGCATTTCGTGCAGTTGAGTCTTTACATCTCTGAGTTTGGCAATTATTTTGATATCTATTTTAATCAATAGTTTGTGCCGACTTGGTCCGTGGGGCCAAGGACAAGAGGCTGAGGGTCAAGGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTAAGTTGTCAGTTAACTGTGATTTTTCAAACTATGGGCTTGGTTCTTTCATTTTACTCTTTCTGTAAGTTCATCCTAGTTCTAATTGAGCTCTTTCATTTGGGTTTTCTGTTTTTGAATTCTCAACATTGGGGGATGGGAGATTTGAACCATTAACCTCTTGGTTATCAGGTCAACATTGTGCCAATAGCTAAGTTCTTATTGGCCATTCATTTGGCTTTTGATTGTAGGTACCAACACATTTGACAGATTTGAGCTTCGCGTCCACAAGCGAGTTATCGATCTTTTCAGCTCAGCAGATGTTGTGAAGCAGATTACCTCTATTACCATTGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGAGTGCAATCTTTTCATGTTTTGCCTATTCTTAGTCTCATTAGAAAAGGTTTACTTTTTTGGGTTTGGAAGCATACTTGTGGGCTTTAAATGCAATAGTCGTTTCCATTACATGTTGAAATTGACGACACTGAGAGTTTTCTTTTCCTTCCAATTTTCTTTTAGAACTTTGTTAATTTCATAATGTTATGCAGATTTTGTATCTATGATATTGTGTCAATTCTCTGCCCTAATTGAGGTTTAAATTCATGGTGTCTAGTTATCTAGGAAATAATAATTTCATATAAGTTTTCTTGAAATCTTAACTTAGTGGGTTTTGGTGGTATACTCCGTAAAAATAGTTGAAGTGTCAATTGGTCCGAAC

mRNA sequence

ATAAATAGTCGCATCGTCCACATCAGTTGGATTCTTTCAGAGAGCGGCGAAGCAGAGATCTCCTTCTCAGCCTCCATCGCAGATTCGTTTTTGGAGATTTAAGATAACCGGAAGCATGGCGTACGCAGCGATGAAACCATCTAAGCCAGGCTTAGAAGATACGCAAGAACAAATCCACAAGATCAGGATTACTCTATCCTCCAAAAATGTTAAGAACCTTGAAAAAGTTTGTGCCGACTTGGTCCGTGGGGCCAAGGACAAGAGGCTGAGGGTCAAGGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATTTGACAGATTTGAGCTTCGCGTCCACAAGCGAGTTATCGATCTTTTCAGCTCAGCAGATGTTGTGAAGCAGATTACCTCTATTACCATTGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGAGTGCAATCTTTTCATGTTTTGCCTATTCTTAGTCTCATTAGAAAAGGTTTACTTTTTTGGGTTTGGAAGCATACTTGTGGGCTTTAAATGCAATAGTCGTTTCCATTACATGTTGAAATTGACGACACTGAGAGTTTTCTTTTCCTTCCAATTTTCTTTTAGAACTTTGTTAATTTCATAATGTTATGCAGATTTTGTATCTATGATATTGTGTCAATTCTCTGCCCTAATTGAGGTTTAAATTCATGGTGTCTAGTTATCTAGGAAATAATAATTTCATATAAGTTTTCTTGAAATCTTAACTTAGTGGGTTTTGGTGGTATACTCCGTAAAAATAGTTGAAGTGTCAATTGGTCCGAAC

Coding sequence (CDS)

ATGGCGTACGCAGCGATGAAACCATCTAAGCCAGGCTTAGAAGATACGCAAGAACAAATCCACAAGATCAGGATTACTCTATCCTCCAAAAATGTTAAGAACCTTGAAAAAGTTTGTGCCGACTTGGTCCGTGGGGCCAAGGACAAGAGGCTGAGGGTCAAGGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATTTGACAGATTTGAGCTTCGCGTCCACAAGCGAGTTATCGATCTTTTCAGCTCAGCAGATGTTGTGAAGCAGATTACCTCTATTACCATTGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGA

Protein sequence

MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ

Homology

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BLAST of Sed0017760 vs. NCBI nr
Match: XP_008439109.1 (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S ribosomal protein S20-2-like [Cucurbita moschata] >XP_022973095.1 40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023516475.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >XP_038878364.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878373.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878380.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878389.1 40S ribosomal protein S20-2-like [Benincasa hispida] >KAA0067687.1 40S ribosomal protein S20-2-like [Cucumis melo var. makuwa] >KAG7030825.1 40S ribosomal protein S20-2 [Cucurbita argyrosperma subsp. argyrosperma] >TYK23691.1 40S ribosomal protein S20-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 9.3e-59
Identity = 120/122 (98.36%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKP+KPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Sed0017760 vs. NCBI nr
Match: KAG6600158.1 (Glutathione S-transferase U17, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.9 bits (603), Expect = 9.3e-59
Identity = 120/122 (98.36%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKP+KPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 229 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 288

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 289 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 348

Query: 121 DQ 123
           DQ
Sbjct: 349 DQ 350

[Close]

BLAST of Sed0017760 vs. NCBI nr
Match: XP_022985516.1 (40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >KAG7014816.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.8 bits (595), Expect = 7.9e-58
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKP+K GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Sed0017760 vs. NCBI nr
Match: XP_022922646.1 (40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 233.8 bits (595), Expect = 7.9e-58
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKP+K GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 34  MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 93

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 94  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 153

Query: 121 DQ 123
           DQ
Sbjct: 154 DQ 155

[Close]

BLAST of Sed0017760 vs. NCBI nr
Match: KAG6576788.1 (40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233.8 bits (595), Expect = 7.9e-58
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKP+K GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 265 MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 324

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 325 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 384

Query: 121 DQ 123
           DQ
Sbjct: 385 DQ 386

[Close]

BLAST of Sed0017760 vs. ExPASy Swiss-Prot
Match: Q9STY6 (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.2e-54
Identity = 109/121 (90.08%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKP+K GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Sed0017760 vs. ExPASy Swiss-Prot
Match: P49200 (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 211.1 bits (536), Expect = 7.2e-54
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 2   AYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Sed0017760 vs. ExPASy Swiss-Prot
Match: P35686 (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-49
Identity = 102/123 (82.93%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 1   MAYA-AMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 60
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 120
           PTKVLHITTRKSPCGEGTNT+DRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 121 ADQ 123
           +DQ
Sbjct: 126 SDQ 128

[Close]

BLAST of Sed0017760 vs. ExPASy Swiss-Prot
Match: P23403 (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-40
Identity = 79/107 (73.83%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 15  DTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCG 74
           D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCG
Sbjct: 12  DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 75  EGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           EG+ T+DRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of Sed0017760 vs. ExPASy Swiss-Prot
Match: Q3ZBH8 (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.5e-40
Identity = 78/102 (76.47%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 20  IHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT 79
           IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ T
Sbjct: 17  IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKT 76

Query: 80  FDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           +DRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 77  WDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of Sed0017760 vs. ExPASy TrEMBL
Match: A0A5A7VKH9 (40S ribosomal protein S20-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00570 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.5e-59
Identity = 120/122 (98.36%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKP+KPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Sed0017760 vs. ExPASy TrEMBL
Match: A0A6J1IAH1 (40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111471601 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.5e-59
Identity = 120/122 (98.36%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKP+KPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Sed0017760 vs. ExPASy TrEMBL
Match: A0A6J1FSX5 (40S ribosomal protein S20-2-like OS=Cucurbita moschata OX=3662 GN=LOC111447005 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.5e-59
Identity = 120/122 (98.36%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKP+KPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Sed0017760 vs. ExPASy TrEMBL
Match: A0A1S3AXJ9 (40S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.5e-59
Identity = 120/122 (98.36%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKP+KPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Sed0017760 vs. ExPASy TrEMBL
Match: A0A6J1J8F7 (40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111483503 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.8e-58
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKP+K GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Sed0017760 vs. TAIR 10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 211.8 bits (538), Expect = 3.0e-55
Identity = 109/121 (90.08%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKP+K GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Sed0017760 vs. TAIR 10
Match: AT3G47370.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 211.8 bits (538), Expect = 3.0e-55
Identity = 109/121 (90.08%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKP+K GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Sed0017760 vs. TAIR 10
Match: AT3G47370.3 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 211.8 bits (538), Expect = 3.0e-55
Identity = 109/121 (90.08%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKP+K GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Sed0017760 vs. TAIR 10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 211.1 bits (536), Expect = 5.1e-55
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 2   AYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Sed0017760 vs. TAIR 10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 211.1 bits (536), Expect = 5.1e-55
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 2   AYAAMKPSKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

The following BLAST results are available for this feature:

BLAST of Sed0017760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439109.1	9.3e-59	98.36	PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S r...	[more]
KAG6600158.1	9.3e-59	98.36	Glutathione S-transferase U17, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022985516.1	7.9e-58	97.54	40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosoma...	[more]
XP_022922646.1	7.9e-58	97.54	40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata]	[more]
KAG6576788.1	7.9e-58	97.54	40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0017760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STY6	4.2e-54	90.08	40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1	[more]
P49200	7.2e-54	90.00	40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2	[more]
P35686	1.4e-49	82.93	40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2...	[more]
P23403	1.2e-40	73.83	40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1	[more]
Q3ZBH8	3.5e-40	76.47	40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1	[more]

BLAST of Sed0017760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VKH9	4.5e-59	98.36	40S ribosomal protein S20-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1IAH1	4.5e-59	98.36	40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111471601 PE=...	[more]
A0A6J1FSX5	4.5e-59	98.36	40S ribosomal protein S20-2-like OS=Cucurbita moschata OX=3662 GN=LOC111447005 P...	[more]
A0A1S3AXJ9	4.5e-59	98.36	40S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV...	[more]
A0A6J1J8F7	3.8e-58	97.54	40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111483503 PE=...	[more]

BLAST of Sed0017760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47370.2	3.0e-55	90.08	Ribosomal protein S10p/S20e family protein	[more]
AT3G47370.1	3.0e-55	90.08	Ribosomal protein S10p/S20e family protein	[more]
AT3G47370.3	3.0e-55	90.08	Ribosomal protein S10p/S20e family protein	[more]
AT3G45030.1	5.1e-55	90.00	Ribosomal protein S10p/S20e family protein	[more]
AT5G62300.1	5.1e-55	90.00	Ribosomal protein S10p/S20e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 79..93 score: 51.41 coord: 22..35 score: 44.51 coord: 57..72 score: 42.43
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 1..121
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 20..119 score: 18.290716
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 24..118 e-value: 1.2E-37 score: 141.1
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 24..118 e-value: 5.4E-27 score: 93.9
IPR036838	Ribosomal protein S10 domain superfamily	GENE3D	3.30.70.600	Ribosomal protein S10 domain	coord: 7..121 e-value: 7.2E-48 score: 163.4
IPR036838	Ribosomal protein S10 domain superfamily	SUPERFAMILY	54999	Ribosomal protein S10	coord: 22..119
IPR005729	Ribosomal protein S10, eukaryotic/archaeal	TIGRFAM	TIGR01046	TIGR01046	coord: 21..119 e-value: 5.9E-40 score: 133.7
None	No IPR available	PANTHER	PTHR11700:SF27	RIBOSOMAL PROTEIN S10-RELATED	coord: 1..121
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 46..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017760.1	Sed0017760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome