Sed0017757 (gene) Chayote v1

Overview


Name	Sed0017757
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG10: 6631280 .. 6631762 (-)
RNA-Seq Expression	Sed0017757
Synteny	Sed0017757

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGAAAAGAAACAATTGTGATATTAAATCATTTCGATTTGGTGGGTAAAAATCGTGATGTCGTCCATGGGAGCAAGCTGCGCTAGGGTTTACGTAATGAAAAAGAAGGCCGAGGAGAAACTCAAGAGGATGGAACAGGACAGATCTGGCAGAAGGGAAGACTCGGTCAAACCTTCTAAACCCGCCGCCCATCACGGCGGCTCCGTCGCCGGCAAATCAAGTAATAAAGTCCATCCCGGTACCGGATTTGGAGCTCCGGGGACCTCTAATTCCTGAAAAACAGAGCTCAGCTCTCTGGCTTTTAGTATCTGAACTGTGTAATTCTATTGCCAGAGTCGCAGTTTTTATTAGTGTCTTCTTTTTTTTGTTTCTTTCTTTATCTGCCTTGGCTTATAGATTTGTGTAAAGTTTTTTTTAAAGAAAATTTCAGAAATGAAACAAAGAAAGTGAAAATTATGGATTTTTTTTCTTTCCTTATCTCCA

mRNA sequence

ACAGAAAAGAAACAATTGTGATATTAAATCATTTCGATTTGGTGGGTAAAAATCGTGATGTCGTCCATGGGAGCAAGCTGCGCTAGGGTTTACGTAATGAAAAAGAAGGCCGAGGAGAAACTCAAGAGGATGGAACAGGACAGATCTGGCAGAAGGGAAGACTCGGTCAAACCTTCTAAACCCGCCGCCCATCACGGCGGCTCCGTCGCCGGCAAATCAAGTAATAAAGTCCATCCCGGTACCGGATTTGGAGCTCCGGGGACCTCTAATTCCTGAAAAACAGAGCTCAGCTCTCTGGCTTTTAGTATCTGAACTGTGTAATTCTATTGCCAGAGTCGCAGTTTTTATTAGTGTCTTCTTTTTTTTGTTTCTTTCTTTATCTGCCTTGGCTTATAGATTTGTGTAAAGTTTTTTTTAAAGAAAATTTCAGAAATGAAACAAAGAAAGTGAAAATTATGGATTTTTTTTCTTTCCTTATCTCCA

Coding sequence (CDS)

ATGTCGTCCATGGGAGCAAGCTGCGCTAGGGTTTACGTAATGAAAAAGAAGGCCGAGGAGAAACTCAAGAGGATGGAACAGGACAGATCTGGCAGAAGGGAAGACTCGGTCAAACCTTCTAAACCCGCCGCCCATCACGGCGGCTCCGTCGCCGGCAAATCAAGTAATAAAGTCCATCCCGGTACCGGATTTGGAGCTCCGGGGACCTCTAATTCCTGA

Protein sequence

MSSMGASCARVYVMKKKAEEKLKRMEQDRSGRREDSVKPSKPAAHHGGSVAGKSSNKVHPGTGFGAPGTSNS

Homology

[Close]

BLAST of Sed0017757 vs. NCBI nr
Match: KAA0036273.1 (hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667.1 hypothetical protein E5676_scaffold255G002550 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-19
Identity = 60/74 (81.08%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MSSMGASCARVYVMKKKAEEKLKRMEQDRSGRRED--SVKPSKPAAHHGGSVAGKSSNKV 60
          MSSMGASCARVYVMKKKAEEKL+RMEQ+RSGRRED  SVKP K A H GG +AGKSS KV
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHHGGGGIAGKSSKKV 60

Query: 61 HPGTGFGAPGTSNS 73
          HPGT FG P TSNS
Sbjct: 61 HPGTVFGVPPTSNS 74

[Close]

BLAST of Sed0017757 vs. NCBI nr
Match: KGN48780.1 (hypothetical protein Csa_002943 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 5.6e-19
Identity = 57/72 (79.17%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MSSMGASCARVYVMKKKAEEKLKRMEQDRSGRREDSVKPSKPAAHHGGSVAGKSSNKVHP 60
          MSSMGASCARVYVMKKKAEEKL+RMEQ+RSGRREDSVKP K + H  G +AGKSS KVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTGFGAPGTSNS 73
          GT FG   TSNS
Sbjct: 61 GTLFGLQATSNS 72

[Close]

BLAST of Sed0017757 vs. NCBI nr
Match: KAG6604014.1 (hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 4.9e-15
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 1  MSSMGASCARVYVMKKKAEEKLKRMEQDRSGRREDSVKPSKPAAHH-GGSVAGKSSNKVH 60
          MSSMGA+CARVYVM+KK EEKLKRMEQ+R+GR ED+VKP K A HH GG +AGK+  KVH
Sbjct: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60

Query: 61 PGTGFGAPGTSNS 73
          PG  F     SNS
Sbjct: 61 PGNVFAVSANSNS 73

[Close]

BLAST of Sed0017757 vs. NCBI nr
Match: KAG6594855.1 (hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 3.2e-14
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1  MSSMGASCARVYVMKKKAEEKLKRMEQDRSGRREDSVKPSKPAAHHGGSVAGKSSNKVHP 60
          MSS+GASCARVYVMKKK EEKL+RMEQ+++GRRED VKPSK  AHHGG+ AG +  KVHP
Sbjct: 1  MSSIGASCARVYVMKKKVEEKLQRMEQEKAGRREDLVKPSK-TAHHGGAFAGITCKKVHP 60

Query: 61 GTGFGAPGTSNS 73
          GT    P ++ S
Sbjct: 61 GTVISVPASNIS 71

[Close]

BLAST of Sed0017757 vs. ExPASy TrEMBL
Match: A0A5A7T065 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002550 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.2e-20
Identity = 60/74 (81.08%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MSSMGASCARVYVMKKKAEEKLKRMEQDRSGRRED--SVKPSKPAAHHGGSVAGKSSNKV 60
          MSSMGASCARVYVMKKKAEEKL+RMEQ+RSGRRED  SVKP K A H GG +AGKSS KV
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHHGGGGIAGKSSKKV 60

Query: 61 HPGTGFGAPGTSNS 73
          HPGT FG P TSNS
Sbjct: 61 HPGTVFGVPPTSNS 74

[Close]

BLAST of Sed0017757 vs. ExPASy TrEMBL
Match: A0A0A0KGB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-19
Identity = 57/72 (79.17%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MSSMGASCARVYVMKKKAEEKLKRMEQDRSGRREDSVKPSKPAAHHGGSVAGKSSNKVHP 60
          MSSMGASCARVYVMKKKAEEKL+RMEQ+RSGRREDSVKP K + H  G +AGKSS KVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTGFGAPGTSNS 73
          GT FG   TSNS
Sbjct: 61 GTLFGLQATSNS 72

[Close]

BLAST of Sed0017757 vs. ExPASy TrEMBL
Match: A0A2N9EUS9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.4e-05
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 1  MSSMGASCARVYVMKKKAEEKLKRMEQDRSGRREDSVKPSKPAAHHGGSVAGKSSNKVHP 60
          MSS+GASCA +YVM+K+ +EKLKRME++R  + E SV+ SK +    GS  G+ S KVHP
Sbjct: 1  MSSIGASCAEIYVMRKRQKEKLKRMEEERVRKGESSVEESKVS----GSTIGR-SKKVHP 56

Query: 61 G 62
          G
Sbjct: 61 G 56

The following BLAST results are available for this feature:

BLAST of Sed0017757 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036273.1	1.9e-19	81.08	hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667...	[more]
KGN48780.1	5.6e-19	79.17	hypothetical protein Csa_002943 [Cucumis sativus]	[more]
KAG6604014.1	4.9e-15	68.49	hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6594855.1	3.2e-14	68.06	hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0017757 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0017757 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T065	9.2e-20	81.08	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KGB8	2.7e-19	79.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1	[more]
A0A2N9EUS9	6.4e-05	55.74	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1	[more]

BLAST of Sed0017757 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..72
None	No IPR available	PANTHER	PTHR34950:SF2	BNAC01G00560D PROTEIN	coord: 1..64
None	No IPR available	PANTHER	PTHR34950	OS04G0457400 PROTEIN	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017757.1	Sed0017757.1	mRNA