Sed0017755 (gene) Chayote v1

Overview


Name	Sed0017755
Type	gene
Organism	Sechium edule (Chayote v1)
Description	U1 small nuclear ribonucleoprotein 70 kDa
Location	LG14: 20582833 .. 20588919 (+)
RNA-Seq Expression	Sed0017755
Synteny	Sed0017755

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAATGAGGTATAAATAGCCTTCGTTGAAGCGATGAACATTTTTGGGTGCCGCCACATTCTCATCTTTCCGGACAATTAGATCGGAGCAAGAATCACTCACAGATGTTCCCCGTCTTCTTCGCTTGATCCATCGTACTAATTCCTTGTTGTCTTCTTCGCCGGAGCGGCGACCGTTCGCCACCATGGGGGATTACAACGACGCCTTCATGCGGAACCAAAACGCCGCCGTTCAGGCCCGTACCAAGGCCCAGAATCGTGCCAGTGTCCTTCAACTCAAACTGGTATTTGGAATGATTTTGATTTTGATTTGATTTCCATTTCTGTAGAAGCCTTTGATTTTGTTTTCGTTGAAGTTAGCTAGGGTTTCATGTATCATTTCGTTGTTTTTAATTTGAAGAAACACAGATTTTACTTATTGTGTTCCGAAAATAGGCCTTGCGTCTTCATAACCATCCATTTTCGTTTTCTTGTTTAGAGATGATAGATTAAAGTTCCACTATAACCATTTTATTTTTTTGTTTTTTGTTTCTAGTTTTTTATTTTTGATTTTTGATTTTTTGTTTTAGAAAATAAAAACAGTATATATTAGATAATTCATTTTGAAAATCCAAAAAACTTGTTGGATAACTATTTTTAATTTTAAATATCACATTTTGTTTAAATTTTTTTAGTTTTTTAATATTTATTCTTATTTTTTTTGACATTTTCTAAAACAAAAACTTAGTTTTTAGAATTTCTTTAATATTTTTAAAATTTTAAAAACAAAAATCAAAATTAATTATCAAACAAACCTATTTTTATAAAAGTAAAAACAAAAAATAAAAAACGAAATGGTTATAAGATGGGCCTAAGTTATCTGTCAAATGGAAATTTTTATGAGAGCCAGAGGCAAATGGCGTCTTCAATGTTCTTTAGCAAATGGTGTGAAATTGTGGATTAAGTTCTTTAGCAAAGTTAAGAAGACCATTTGGGAGCATTTTGTGTGAGCCTTTTTGTGGAACATTTAGATTGAAAGAAACCACAGAATCTTCCAGGATGTGTCCTTTTCCTTCTCTCGCTCTTTGGATGTTGTTACATTGATGGGGTTTCTTGGTGCAAGCTTTTTCCCGCCCTACTTCGCAATTATAGTTTTAGTACTTTACTTAATAGTTGGAGATCTCTTCTGTAACAAGTTCTGTTTGAGATTTTGTCTCTTTTGTAATTTCATCATATTAATTCAATTGTATCTTTTATTAAAAAAAAAAAAGATGGGCTTGTATTGCATTTGACTATGGAATCTCTCAATTTCTTAATTTTCCTTCTCGTGCAGATTGGGCAGAGTCATCCCACTGGTCTTACTAATAATCTCCTGAAGCTGTTTGAGCCTCGACCGCCTTTGGAGTTCAAACCTCCACCGGAGAAAAGAAAATGTCCACCATTACTAGGTTTTATTTCTTGATTGATATTTTATGCACTTATTTGTTGTTGTTGTTGTTGTTTTTTACGTTTCGTTGCGTATGTTATGTGGAGGGTTGTAATTCTTCTATCTCATTTTGTTTTGAAGGGATGGCTCAGTTTGTGAGTCATTTTGCAGAACCTGGTGATCCGGAATATGCTCCCCCAATTCAAAAGGGTGAAACTCCTGTAAGACAATTCACTTCTTAACGATTGTTTGAACCATTATCCCCAATCCTTATAACTTTGAATTTTGAATCAATCTGTATCTTCCCTCCAATACATATATTTTGAGTATATGTATATGTATCATGTATGTATAATGTTAACAAGGAATGTGAGCATTAAGCTTTGTAATAAGAAGCTGTTTGGTAGCTTGCGGTTCTAAATGGTTGTATATATTGTAAATTTGTAAGGCTATTGTGCAAGTGTTACAAACGGCTCATTTTCTCATAGTTTTTTAAGGTTGCAATGCTTCAATTGGTTTTGAACAACTGAAAAATAATAATAATATGTTTTAACCGAACTTCCATTGCTAAAATGAGGAAACAATTTTTACTAAAAAAAAAGTATCTTATTTATAGTGGAAACTATGATACAAACAAATGCTGTTTCCTATAAAATAAATGTATCTATCTTACAGAATGTCAGGAACAGTATTCAATTTCCAAGTAATATGATCTTAATATATTTTTGAAGAATAAATGATGGTCGTTTGTGCATAAAGCTGTATGTGAATCAAGGTGAGTGCCCCGGGTATGTAGTGGAGCAAATTTTGATTCCCGGTTATCAAAAAAATAAATAAACTGTGTATAAAGCTGCTTGGTAATTTAGACAAGTAACTATTTTTACTCTTTATAATCCAGAATCTGAAACATTTCAGGCACAAAGAAAGGCTAGAATTCACTTGCTAAAAATTGAAAAGGGCGCAGAGAAAGTTGCTGAGGAGCTGCCTAAATGTGATATAAATCTCTTCAGTGCTCACTCTGAATTTGTAGTTAAATATTTCCAATGTCTTTTATCTTACATATGTAGTGTACGGTTGTGCAGATCTTGAACGTGATGATCCTAATGTTACTGGAGATCCATACAAAACGCTCTTTGTGGCTAGACTGGTGTGTAAAATTCAGTGTACATAGTTCCTTGACTTAAGCTACATGTTTCACCTAAAATTTTTGTTATCTATTGGCAGAATTATGAGACAACTGAGAGCAGAATCAAAAGAGAGCTCGAGTCTTATGGGCCAATCAAGCGGGTAGGTATTTGAGCATCCTCATGGGGCTCGGTGAGAGGTTAATATTTGTGTAGTCAATTAAATAATTTTTACTACCTGAAATATTTTGGGCAGTTAACATGTTTTTGGTTCATTTCCTTCAAAAAAACAATTTTGGTTCATGGGTTGACCTACGTGTTTTACTTACATCCAAATGTTATAGGGTAAGGCGGTATGTGGCATAAGTTCCCAGACACTCGGTAGTTTTTTGTTTATATCATTCTAAACCACCTTGGTGTGGCATATTCATTAGCATGAATTTTCTTGGATAGGTTGTCTCAGGTAATAGTTTTTCGATGTTGTAATGATAATAAAACAGTTCATGCTTTATCTTCAAATAACCCATCAGAAATATTCCATGGGCATATCGAAAGTCGAACTATGCTAAAAAGAAAGGTCTCTTATTTGCCTTTTTCTTTCAACATTCTCCCCATTTTAAGTAGTCAGCAAGTTTTATGGAAGTAAAATATGTTTCTTCCTGATTGGACCTTTACAATGGTGTCGCATTTGAAGAAAGATTAATGCCAAACACCTCCATGGATTCTTCATTGATAATTCAAGCTCCCTACTAGTCTCTCAGGTAAGGCTGCTGGTTTGCAGTAATGACTTTCATATGTATTTCATTTCCCTCTTAGTGAACGTGTCTTTGCTCAGCCATAGTTGGCTAGAGAACTCTCAAGGCATGACGTTTATAGGAAAATCCTTATATAAAGTTCTATACATCAAGAACTGATGGTAAGGAAGCAGTTAGTTCTATATTCAGCCAAAAATTATTCATATTATCAGAATTTCTACGGCTTTGATCCCAAAGATGGTGCGCGTCATCATGCGTGATGAAACTGAAAATTTTAGGTTGGGCAGTGGAGTGATGTTCTTTGGCTTTTGGCCTTTATATTCAAGCAAGTAGCAAACACAGGGATTGTCAACTTCCTTATTTTTCTGCCTTGGGTAAAACGCATAGGGGAGTATTAGCCTCTCTCTCTCCTTTGAATTTCGTGAATTTTCTGCTGCTAAAAGTTTTACTTTGGCTTCAAAAGGCATTAAAAAAATCTGCCGTTGAGAAGATTTCCTGGTATATTTTCTGTATTACACATCTTTTTTCGTTATTTGAAAAATAATTTCCCTGGTAAGGGGAGTTTAGAATGTTCAACAACTGGTAAAATGGTCACAAATACTTCAGTTTTTCCGACTCTAGCTGGTGGTGATGCATCTCGCGATGGAAGCTCTATGATTTAAAGGTGAGCACGGCTAATTAGGCATAGTGCCTGTTTGCCGTGCCAATACAATTAAATTATGATAAACTTACAGTATTTATCTAGCTATAAATTTATAAAACCTTTAGCAGAATGTATAATGGAAAGAGATTTGATTTTTCTTCTGCAATATGACTTCTGGTTTGTGTAATTTTCTCTTTTTGCAGGTCCGATTGATCACGGACGAAGTGACGGGTAAACCTAAAGGCTATGCTTTCATTGAGTACATGCACAAAAGAGATATGAAAAGTTTGTCTCAATTCAATTGAATTTTTTTACCCCTTTTTCTATTTGATTAATTTCCCCATTTGAAACTAATTAATTTACTCACCTCCATTTGACATTACTCAGGTGCATATAAGCAAGCTGATGGTAAGAAGATTGATGGTAGAAGGGTACTAGTGGATGTTGAGCGAGGGAGAACAGTACCGAATTGGCGTCCTCGCCGGCTGGGTGGTGGTCTTGGAACTTCCAGAGTGGGAGGTGAAGATAATAACCAGAGGCACTCCGGAAGGTAATTAATATGATGTCAACAACCCCTGCTCTTTCAATTCTAGTGCAAACCATTGATAAATATTGATTATCTTTGTACTATTAAACAATACTGAGTGCATAATCACGATTTTCAACCTGAAATTTTTGTACCTTGGGCAGCTCATTTGTTTTTTATTTTATGGCTGGAAATTTATAAAGATGAAACTGAATTTAATATATTACTTTCCATTCTGAAAGCATTTATATTTTGTTCAGGGAGCAACAGCAATCTGGAGCACCATCTCGATCAGAGGAGCCAAGGGCTCGTGAAGATCGCCATGGAGAGCGGTATGATGCTCCATATATTGTTCTTTCCTTTTAGATCAAATTCGCGTGTATGCTTATTTCAACAACGATTTTTGCATTTGAACGTAACTGCAATTTTTGTTAAATGTAAGATGCTATGTAAATAGGCTTCAATTTAATGTTTTCAGAGATAGGGAAAAGTCGTATGAGAAGGGAAGAGACAGAGAAAGAGAGAAGTCCCATGAGAGATCTAAGGATCGTGATGCTAGAGAAGACAAGCCTCACAGAGATCGTGATAGGACTAGAGATAGAGACAGAGATAGGGACAGAGAAAGGGAAAGAGACCGTGATAGAACACGTGATCGTGATCGAGGAAGGGACCGAGGCCGTGATCGGGAACGTCACCGGGATAGAGATAGGGAGAGAGATCGTGATCACGACGGGGGATATGCAGACCCTGATCGTGGTCGCTCCCATGATAGGGAATCAAATTACGATCGGGTTGAATCGAAATATGAAAAGGATAGACATGGTGATCGAGACAGAGATATTGATCATGCTGAAACTGAGGATGGTCATGGGTGGTATGATCAGCCTGAGCATGGGCAAAGACACCCAGATACTGATCATGATCCCCAATACAATGATCACTTTGAACACAGCCGAAGTCGAGGGCAACATGATCACCCAGAAGACCATCGGGATGAAGATCGCTATGATCAGAATGACAGAATGGAGGAGGATGATTACCATTATGAGCGCGGCACTTCTGAATCACGTGATAGAGAGAGGTCTCGCGATTTGAATCACGAATATAGGCGCAGTGAGAGATCTCATTCCAGAGAGCATTAGTTTCTCATGCTGCAGTCCGTTCTGCTGGTAAGTATCTGCTGCTCACTTTCCTCCCTTCTCTTTCTTTCTAGTTTATACGCCACCGCACCACGTCTCGGCTTCTCCTATATGTGTTCTTGAATGTTCTTTCTCAGGTTAAGATGATATCAACATCCATGAAAGCTCATGTAGCGGCTGCGATCGGTGTTGAAATCGTCTTCTTTTGTTATTGGCCTCTCTCAAGTTGCTCGAACGTTGTTTTGCGTATGCCTGATGATGTTGTATGTTCTTTGGAGTTTCAGTTCCAACCACTTTATTCAGATTTTTGCTCAATTTATTTATGTGCTAAAACTCCCTCTAGACTTGCTGTGTATTAGTTTAGTTTGTGACCATGATTCTTAAGCTCCTACAGTGTTATATAGAAACCATTTTGAATGCTTGTTTAATTGAACAGAACATGGGTTTTTTATAGCAACAAAATCAAATATTATGGTGGTGGTAGTGGTTTTATTTT

mRNA sequence

CAGAATGAGGTATAAATAGCCTTCGTTGAAGCGATGAACATTTTTGGGTGCCGCCACATTCTCATCTTTCCGGACAATTAGATCGGAGCAAGAATCACTCACAGATGTTCCCCGTCTTCTTCGCTTGATCCATCGTACTAATTCCTTGTTGTCTTCTTCGCCGGAGCGGCGACCGTTCGCCACCATGGGGGATTACAACGACGCCTTCATGCGGAACCAAAACGCCGCCGTTCAGGCCCGTACCAAGGCCCAGAATCGTGCCAGTGTCCTTCAACTCAAACTGATTGGGCAGAGTCATCCCACTGGTCTTACTAATAATCTCCTGAAGCTGTTTGAGCCTCGACCGCCTTTGGAGTTCAAACCTCCACCGGAGAAAAGAAAATGTCCACCATTACTAGGGATGGCTCAGTTTGTGAGTCATTTTGCAGAACCTGGTGATCCGGAATATGCTCCCCCAATTCAAAAGGGTGAAACTCCTGCACAAAGAAAGGCTAGAATTCACTTGCTAAAAATTGAAAAGGGCGCAGAGAAAGTTGCTGAGGAGCTGCCTAAATATCTTGAACGTGATGATCCTAATGTTACTGGAGATCCATACAAAACGCTCTTTGTGGCTAGACTGAATTATGAGACAACTGAGAGCAGAATCAAAAGAGAGCTCGAGTCTTATGGGCCAATCAAGCGGGTCCGATTGATCACGGACGAAGTGACGGGTAAACCTAAAGGCTATGCTTTCATTGAGTACATGCACAAAAGAGATATGAAAAGTGCATATAAGCAAGCTGATGGTAAGAAGATTGATGGTAGAAGGGTACTAGTGGATGTTGAGCGAGGGAGAACAGTACCGAATTGGCGTCCTCGCCGGCTGGGTGGTGGTCTTGGAACTTCCAGAGTGGGAGGTGAAGATAATAACCAGAGGCACTCCGGAAGGGAGCAACAGCAATCTGGAGCACCATCTCGATCAGAGGAGCCAAGGGCTCGTGAAGATCGCCATGGAGAGCGAGATAGGGAAAAGTCGTATGAGAAGGGAAGAGACAGAGAAAGAGAGAAGTCCCATGAGAGATCTAAGGATCGTGATGCTAGAGAAGACAAGCCTCACAGAGATCGTGATAGGACTAGAGATAGAGACAGAGATAGGGACAGAGAAAGGGAAAGAGACCGTGATAGAACACGTGATCGTGATCGAGGAAGGGACCGAGGCCGTGATCGGGAACGTCACCGGGATAGAGATAGGGAGAGAGATCGTGATCACGACGGGGGATATGCAGACCCTGATCGTGGTCGCTCCCATGATAGGGAATCAAATTACGATCGGGTTGAATCGAAATATGAAAAGGATAGACATGGTGATCGAGACAGAGATATTGATCATGCTGAAACTGAGGATGGTCATGGGTGGTATGATCAGCCTGAGCATGGGCAAAGACACCCAGATACTGATCATGATCCCCAATACAATGATCACTTTGAACACAGCCGAAGTCGAGGGCAACATGATCACCCAGAAGACCATCGGGATGAAGATCGCTATGATCAGAATGACAGAATGGAGGAGGATGATTACCATTATGAGCGCGGCACTTCTGAATCACGTGATAGAGAGAGGTCTCGCGATTTGAATCACGAATATAGGCGCAGTGAGAGATCTCATTCCAGAGAGCATTAGTTTCTCATGCTGCAGTCCGTTCTGCTGGTTAAGATGATATCAACATCCATGAAAGCTCATGTAGCGGCTGCGATCGGTGTTGAAATCGTCTTCTTTTGTTATTGGCCTCTCTCAAGTTGCTCGAACGTTGTTTTGCGTATGCCTGATGATGTTGTATGTTCTTTGGAGTTTCAGTTCCAACCACTTTATTCAGATTTTTGCTCAATTTATTTATGTGCTAAAACTCCCTCTAGACTTGCTGTGTATTAGTTTAGTTTGTGACCATGATTCTTAAGCTCCTACAGTGTTATATAGAAACCATTTTGAATGCTTGTTTAATTGAACAGAACATGGGTTTTTTATAGCAACAAAATCAAATATTATGGTGGTGGTAGTGGTTTTATTTT

Coding sequence (CDS)

ATGGGGGATTACAACGACGCCTTCATGCGGAACCAAAACGCCGCCGTTCAGGCCCGTACCAAGGCCCAGAATCGTGCCAGTGTCCTTCAACTCAAACTGATTGGGCAGAGTCATCCCACTGGTCTTACTAATAATCTCCTGAAGCTGTTTGAGCCTCGACCGCCTTTGGAGTTCAAACCTCCACCGGAGAAAAGAAAATGTCCACCATTACTAGGGATGGCTCAGTTTGTGAGTCATTTTGCAGAACCTGGTGATCCGGAATATGCTCCCCCAATTCAAAAGGGTGAAACTCCTGCACAAAGAAAGGCTAGAATTCACTTGCTAAAAATTGAAAAGGGCGCAGAGAAAGTTGCTGAGGAGCTGCCTAAATATCTTGAACGTGATGATCCTAATGTTACTGGAGATCCATACAAAACGCTCTTTGTGGCTAGACTGAATTATGAGACAACTGAGAGCAGAATCAAAAGAGAGCTCGAGTCTTATGGGCCAATCAAGCGGGTCCGATTGATCACGGACGAAGTGACGGGTAAACCTAAAGGCTATGCTTTCATTGAGTACATGCACAAAAGAGATATGAAAAGTGCATATAAGCAAGCTGATGGTAAGAAGATTGATGGTAGAAGGGTACTAGTGGATGTTGAGCGAGGGAGAACAGTACCGAATTGGCGTCCTCGCCGGCTGGGTGGTGGTCTTGGAACTTCCAGAGTGGGAGGTGAAGATAATAACCAGAGGCACTCCGGAAGGGAGCAACAGCAATCTGGAGCACCATCTCGATCAGAGGAGCCAAGGGCTCGTGAAGATCGCCATGGAGAGCGAGATAGGGAAAAGTCGTATGAGAAGGGAAGAGACAGAGAAAGAGAGAAGTCCCATGAGAGATCTAAGGATCGTGATGCTAGAGAAGACAAGCCTCACAGAGATCGTGATAGGACTAGAGATAGAGACAGAGATAGGGACAGAGAAAGGGAAAGAGACCGTGATAGAACACGTGATCGTGATCGAGGAAGGGACCGAGGCCGTGATCGGGAACGTCACCGGGATAGAGATAGGGAGAGAGATCGTGATCACGACGGGGGATATGCAGACCCTGATCGTGGTCGCTCCCATGATAGGGAATCAAATTACGATCGGGTTGAATCGAAATATGAAAAGGATAGACATGGTGATCGAGACAGAGATATTGATCATGCTGAAACTGAGGATGGTCATGGGTGGTATGATCAGCCTGAGCATGGGCAAAGACACCCAGATACTGATCATGATCCCCAATACAATGATCACTTTGAACACAGCCGAAGTCGAGGGCAACATGATCACCCAGAAGACCATCGGGATGAAGATCGCTATGATCAGAATGACAGAATGGAGGAGGATGATTACCATTATGAGCGCGGCACTTCTGAATCACGTGATAGAGAGAGGTCTCGCGATTTGAATCACGAATATAGGCGCAGTGAGAGATCTCATTCCAGAGAGCATTAG

Protein sequence

MGDYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKPPPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGETPAQRKARIHLLKIEKGAEKVAEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRVRLITDEVTGKPKGYAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGEDNNQRHSGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDREREKSHERSKDRDAREDKPHRDRDRTRDRDRDRDRERERDRDRTRDRDRGRDRGRDRERHRDRDRERDRDHDGGYADPDRGRSHDRESNYDRVESKYEKDRHGDRDRDIDHAETEDGHGWYDQPEHGQRHPDTDHDPQYNDHFEHSRSRGQHDHPEDHRDEDRYDQNDRMEEDDYHYERGTSESRDRERSRDLNHEYRRSERSHSREH

Homology

[Close]

BLAST of Sed0017755 vs. NCBI nr
Match: XP_038881482.1 (U1 small nuclear ribonucleoprotein 70 kDa [Benincasa hispida])

HSP 1 Score: 802.4 bits (2071), Expect = 2.2e-228
Identity = 440/508 (86.61%), Postives = 466/508 (91.73%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT NLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGETPAQRKARIHLLKIEKGAEKVAEE 120
           PPEKRKCPPL GMAQFVS FAEP DPEYAPP+QKGETPA+R+ARIHLL+IEKGAEK AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSSFAEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRVRLITDEVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRE ESYGPIKRVRLITD+VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGED 240
           YAFIEYMHKRDMK+AYKQADG+KIDGRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGGE+
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQRHSGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDRE------REKSHERSK 300
           N+QRHSGREQQQ+GAPSRSEEPRAREDRH ERDREKSY+KGRDRE      RE+SHERSK
Sbjct: 241 NSQRHSGREQQQAGAPSRSEEPRAREDRHAERDREKSYDKGRDRERDREKSRERSHERSK 300

Query: 301 DRDAREDKPHRDRDRTRDRDRDRDRERERDRDRTRDRDRGRDRG--------RDRERHRD 360
           DRD RED+ HRDRDRTRDRDRDRDRER+R  DR R RDRGRDRG        RDR+RHRD
Sbjct: 301 DRDVREDRHHRDRDRTRDRDRDRDRERDRGYDRDRTRDRGRDRGRDHDRDRDRDRDRHRD 360

Query: 361 RDRE--RDRDHDGGYADPDRGRSHDRESNYDRVESKYEKDRHGDRDRDIDHAETEDGHGW 420
           RDRE  RDRDH+GGY DPDRGRSHDR+ +YDR+ESKYEKDRHGDRDRDIDHAETEDG GW
Sbjct: 361 RDRERDRDRDHEGGYPDPDRGRSHDRD-DYDRIESKYEKDRHGDRDRDIDHAETEDGRGW 420

Query: 421 YDQPEHGQRHPDTDHDPQYNDHFEHSRSRGQHDHPEDHRDEDRYDQNDRMEEDDYHYERG 480
           YDQPEHG RHPDTDHDPQY DHFEH+RSRGQ+DH E HRD+DRYDQ D   EDDY YERG
Sbjct: 421 YDQPEHGHRHPDTDHDPQYYDHFEHNRSRGQYDHSEGHRDQDRYDQYDDRMEDDYPYERG 480

Query: 481 TSESRDRERSRDLNHEYRRSERSHSREH 493
           TSES DRERSRDLNHEY+RSERSHSRE+
Sbjct: 481 TSESHDRERSRDLNHEYKRSERSHSREY 507

[Close]

BLAST of Sed0017755 vs. NCBI nr
Match: XP_022132461.1 (U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia])

HSP 1 Score: 801.2 bits (2068), Expect = 5.0e-228
Identity = 440/511 (86.11%), Postives = 469/511 (91.78%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGETPAQRKARIHLLKIEKGAEKVAEE 120
           PPEKRKCPPL GMAQFVS+FAEP DPEYAPP+QKGETPAQR+ARIHLL+IEKGAEK AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPAQRRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRVRLITDEVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRE ESYGPIKRVRLITD+VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGED 240
           YAFIEYMHKRDMK+AYKQADG+KIDGRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGGE+
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQRHSGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDRE------REKSHERSK 300
           NNQRHSGREQQQSGAPSRSEEPR REDRHGERDREKS+EKGRDRE      RE+SHERSK
Sbjct: 241 NNQRHSGREQQQSGAPSRSEEPRGREDRHGERDREKSHEKGRDREREREKSRERSHERSK 300

Query: 301 DRDAREDKPHRDRDRTRDRDRDRDRERER----DRDRTRDRDRGRDRG--------RDRE 360
           DRD RED+ HRDRDRTRDRDRDR+RERER    DRD+TRDRDRGRDRG        RDR+
Sbjct: 301 DRDLREDRHHRDRDRTRDRDRDRERERERDRGYDRDKTRDRDRGRDRGRDYERDRDRDRD 360

Query: 361 RHRDRDRERDRDHDGGYADPDRGRSHDRESNYDRVESKYEKDRHGDRDRDIDHAETEDGH 420
           RHRDRDRERDR+H+ GY +PDRGRSHDRES+YDRVESKYEKDRHGDRDR+ID  ETEDG 
Sbjct: 361 RHRDRDRERDRNHEDGYPEPDRGRSHDRESDYDRVESKYEKDRHGDRDREIDRTETEDGR 420

Query: 421 GWYDQPEHGQRHPDTDHDPQYNDHFEHSRSRGQH-DHPEDHRDEDRYDQNDRMEEDDYHY 480
           GWYDQ EHG RHPD DHDPQY DHFEH+R RGQ+ D+PE H D+DRYDQ DRM EDDYHY
Sbjct: 421 GWYDQSEHGHRHPDPDHDPQYYDHFEHNRGRGQYDDNPEGHHDQDRYDQYDRM-EDDYHY 480

Query: 481 ERGTSESRDRERSRDLNHEYRRSERSHSREH 493
           ERGTSES D+ERSRD+NHEYRRSERSHSRE+
Sbjct: 481 ERGTSESHDKERSRDMNHEYRRSERSHSREY 510

[Close]

BLAST of Sed0017755 vs. NCBI nr
Match: XP_023517571.1 (U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita pepo subsp. pepo] >XP_023517572.1 U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 800.0 bits (2065), Expect = 1.1e-227
Identity = 439/513 (85.58%), Postives = 473/513 (92.20%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGETPAQRKARIHLLKIEKGAEKVAEE 120
           PPEKRKCPPL GMAQFVSHFAEP DPEYAPP+Q+GETP+QR+ARIHLL+IEKGA+K AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRVRLITDEVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLNYET+ESRIKRE ESYGPIKRVRLITD+VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGED 240
           YAFIEYMHKRDMK+AYKQADG+KIDGRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGGE+
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQRHSGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDRE------REKSHERSK 300
           N+QRH+GREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDRE      RE+SH+RSK
Sbjct: 241 NSQRHAGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDREREREKSRERSHDRSK 300

Query: 301 DRDAREDKPHRDRDRTRDRDRDRDRERER------DRDRTRDRDRGRDRG--------RD 360
           DRD RED+ HRDRDRTRDRDRDR++ERER      DRDRTRDRDRGRDRG        RD
Sbjct: 301 DRDLREDRHHRDRDRTRDRDRDREKERERERDRGHDRDRTRDRDRGRDRGRDYERDRDRD 360

Query: 361 RERHRDRDRERDRDHDGGYADPDRGRSHDRESNYDRVESKYEKDRHGDRDRDIDHAETED 420
           R+RHRDRDRER+RDH+GGYADPDRGRSHDRES+YDRV+SKYEKDRHGDR++DID  ETED
Sbjct: 361 RDRHRDRDRERERDHEGGYADPDRGRSHDRESDYDRVDSKYEKDRHGDREKDIDPGETED 420

Query: 421 GHGWYDQPEHGQRH-PDTDHDPQYNDHFEHSRSRGQHDHPEDHRDEDRYDQNDRMEEDDY 480
           GHGWYDQP HG RH PDTDHDPQY DHFEH+RSR Q+DHPE H  +DRYDQ DRM EDDY
Sbjct: 421 GHGWYDQPAHGHRHPPDTDHDPQYYDHFEHNRSREQYDHPE-HHGQDRYDQYDRM-EDDY 480

Query: 481 HYERGTSESRDRERSRDLNHEYRRSERSHSREH 493
            YERGTSE+RDRERSRDLNHEYRR+ERSHSRE+
Sbjct: 481 RYERGTSETRDRERSRDLNHEYRRTERSHSREY 511

[Close]

BLAST of Sed0017755 vs. NCBI nr
Match: XP_023003041.1 (U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita maxima] >XP_023003042.1 U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita maxima] >XP_023003043.1 U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita maxima] >XP_023003044.1 U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita maxima])

HSP 1 Score: 798.5 bits (2061), Expect = 3.2e-227
Identity = 439/512 (85.74%), Postives = 470/512 (91.80%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGETPAQRKARIHLLKIEKGAEKVAEE 120
           PPEKRKCPPL GMAQFVSHFAEP DPEYAPP+Q+GETP+QR+ARIHLL+IEKGA+K AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRVRLITDEVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLNYET+ESRIKRE ESYGPIKRVRLITD+VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGED 240
           YAFIEYMHKRDMK+AYKQADG+KIDGRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGGE+
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQRHSGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDRE------REKSHERSK 300
           N+QRH+GREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDRE      RE+SH+RSK
Sbjct: 241 NSQRHAGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDREREREKSRERSHDRSK 300

Query: 301 DRDAREDKPHRDRDRTRDRDRDRDRERER------DRDRTRDRDRGRDRG--------RD 360
           D D RED+ HRDRDRTRDRDRDR++ERER      DRDRTRDRDRGRDRG        RD
Sbjct: 301 DHDLREDRHHRDRDRTRDRDRDREKERERERERGHDRDRTRDRDRGRDRGRDYERDRDRD 360

Query: 361 RERHRDRDRERDRDHDGGYADPDRGRSHDRESNYDRVESKYEKDRHGDRDRDIDHAETED 420
           R+RHRDRDRERDRDH GGYADPDRGRSHDRES+YDRV+SKYEKDRHGDRD+DID  ETED
Sbjct: 361 RDRHRDRDRERDRDHGGGYADPDRGRSHDRESDYDRVDSKYEKDRHGDRDKDIDPGETED 420

Query: 421 GHGWYDQPEHGQRH-PDTDHDPQYNDHFEHSRSRGQHDHPEDHRDEDRYDQNDRMEEDDY 480
           GHGWYDQP HG RH PDTDHDPQY DHFEH+RSR Q+DHPE H  +DRYDQ DRM EDDY
Sbjct: 421 GHGWYDQPVHGHRHPPDTDHDPQYYDHFEHNRSREQYDHPE-HHGQDRYDQYDRM-EDDY 480

Query: 481 HYERGTSESRDRERSRDLNHEYRRSERSHSRE 492
            YERGTSE+RDRERSRDLNHEYRR++RSHSRE
Sbjct: 481 RYERGTSETRDRERSRDLNHEYRRADRSHSRE 510

[Close]

BLAST of Sed0017755 vs. NCBI nr
Match: XP_022962873.1 (U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita moschata] >XP_022962874.1 U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita moschata])

HSP 1 Score: 796.6 bits (2056), Expect = 1.2e-226
Identity = 437/512 (85.35%), Postives = 470/512 (91.80%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGETPAQRKARIHLLKIEKGAEKVAEE 120
           PPEKRKCPPL GMAQFVSHFAEP DPEYAPP+Q+GETP+QR+ARIHLL+IEKGA+K  EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRVRLITDEVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLNYET+ESRIKRE ESYGPIKRVRLITD+VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGED 240
           YAFIEYMHKRDMK+AYKQADG+KIDGRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGGE+
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQRHSGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDRE------REKSHERSK 300
           N+QRH+GREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDRE      RE+SH+RSK
Sbjct: 241 NSQRHAGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDREREREKSRERSHDRSK 300

Query: 301 DRDAREDKPHRDRDRTRDRDRDRDRERER------DRDRTRDRDRGRDRG--------RD 360
           DRD RED+ HRDRDRT DRDRDR++ERER      DRDRTRDRDRGRDRG        RD
Sbjct: 301 DRDLREDRHHRDRDRTIDRDRDREKERERERDRGHDRDRTRDRDRGRDRGRDYERDRDRD 360

Query: 361 RERHRDRDRERDRDHDGGYADPDRGRSHDRESNYDRVESKYEKDRHGDRDRDIDHAETED 420
           R+RHRDRDRERDRDH+GG+ADPDRGRSHDRES+YDR++SKYEKDRHGDRD+DID  ETED
Sbjct: 361 RDRHRDRDRERDRDHEGGFADPDRGRSHDRESDYDRIDSKYEKDRHGDRDKDIDPGETED 420

Query: 421 GHGWYDQPEHGQRH-PDTDHDPQYNDHFEHSRSRGQHDHPEDHRDEDRYDQNDRMEEDDY 480
           GHGWYDQP HG RH PDTDHDPQY DHFEH+RSR Q+DHPE H  +DRYDQ DRM EDDY
Sbjct: 421 GHGWYDQPAHGHRHPPDTDHDPQYYDHFEHNRSREQYDHPE-HHGQDRYDQYDRM-EDDY 480

Query: 481 HYERGTSESRDRERSRDLNHEYRRSERSHSRE 492
            YERGTSE+RDRERSRDLNHEYRR+ERSHSRE
Sbjct: 481 RYERGTSETRDRERSRDLNHEYRRTERSHSRE 510

[Close]

BLAST of Sed0017755 vs. ExPASy Swiss-Prot
Match: Q42404 (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana OX=3702 GN=RNU1 PE=1 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 4.2e-121
Identity = 286/500 (57.20%), Postives = 338/500 (67.60%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60
           MGD  D F+RN NAAVQAR K QNRA+VLQLKL+GQSHPTGLTNNLLKLFEPRPPLE+KP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGETPAQRKARIHLLKIEKGAEKVAEE 120
           PPEKRKCPP  GMAQFVS+FAEPGDPEYAPP  + E P+Q++ RIH L++EKG EK AE+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRVRLITDEVTGKPKG 180
           L KY   +DPN TGDPYKTLFV+RLNYE++ES+IKRE ESYGPIKRV L+TD++T KPKG
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKG 180

Query: 181 YAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGED 240
           YAFIEYMH RDMK+AYKQADG+KIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGG +
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGE 240

Query: 241 NNQRHSGREQQQSGAPSRSEEP-RAREDRHGERDREKSYEKGRDREREKSHERSKDRDAR 300
                   EQQ  G  S+SEEP R RE+R   R++ K  E+ R+   E+  ERS+DR  R
Sbjct: 241 ----EIVGEQQPQGRTSQSEEPSRPREEREKSREKGKERERSRELSHEQPRERSRDR-PR 300

Query: 301 EDKPHRDRDR-TRDRDRDRDRERERDRDR----TRDRDRGRDRGRDRERHRDRDRERDRD 360
           EDK HRDRD+  RDRDRD  R+R+R RDR     RDRDRGRDR   R+  RDR R+++RD
Sbjct: 301 EDKHHRDRDQGGRDRDRDSRRDRDRTRDRGDRDRRDRDRGRDR-TSRDHDRDRSRKKERD 360

Query: 361 HDGG-YADPDRGRSHDRESNYDRVESKYEKDRHGDRDRDIDHAETEDGHGWYDQPEHGQR 420
           ++GG Y     GRS +R++ Y                      E E+  G+Y+       
Sbjct: 361 YEGGEYEHEGGGRSRERDAEY--------------------RGEPEETRGYYE------- 420

Query: 421 HPDTDHDPQYNDHFEHSRSRGQHDHPEDHRDEDRYDQN-DRMEEDDYHYERGTSESRDRE 480
                                     +D  D DRY    D+MEEDD+ YER         
Sbjct: 421 --------------------------DDQGDTDRYSHRYDKMEEDDFRYER--------- 425

Query: 481 RSRDLNHEYRRSERSHSREH 493
                  EY+RS+RS SRE+
Sbjct: 481 -------EYKRSKRSESREY 425

[Close]

BLAST of Sed0017755 vs. ExPASy Swiss-Prot
Match: Q66II8 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 8.4e-61
Identity = 187/427 (43.79%), Postives = 257/427 (60.19%), Query Frame = 0


Query: 42  LTNNLLKLFEPRPPLEFKP-----PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGE 101
           L  NLL LF PR P+ + P     P EK    P  G+A ++  F +P D   APP  + E
Sbjct: 5   LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPAQRKARIHLLKIEKGAEKVAEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKR 161
           T  +R  R    KIE+  + V  EL  +   +D N  GD +KTLFVAR+NY+TTES+++R
Sbjct: 65  TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 ELESYGPIKRVRLITDEVTGKPKGYAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERG 221
           E E YGPIKR+ ++ ++ +GKP+GYAFIEY H+RDM SAYK ADGKKIDGRRVLVDVERG
Sbjct: 125 EFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 184

Query: 222 RTVPNWRPRRLGGGLGTSRVGGEDNNQRHSGREQQQSGAPSRSEEPRAREDRHGERDREK 281
           RTV  WRPRRLGGGLG +R GG D N RHSGR+          +  R R+ R   R+R+K
Sbjct: 185 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRDRERERDRRERSRERDK 244

Query: 282 SYEKGRDREREKSHERSKDRDAREDKPHRDRDRTRDRDRDRDRERERDRDRTRDRDRGRD 341
             E+ R R RE+   RS+ R+  E K  R+R R +D+D+D+D+++E+D+D+ RDR R R 
Sbjct: 245 ERERRRSRSRER-RRRSRSREKEERKRSRERSRDKDKDKDKDKDKEKDKDKDRDRKR-RS 304

Query: 342 RGRDRERHRDRDRERDRDHDGG----YADPDRGRSHDRESNYDRVESKYE-KDRHGDRDR 401
           R R+R+R RDRDRE+  D   G      D  +  +   +   D +E K E ++++ DRDR
Sbjct: 305 RSRERKRERDRDREKKEDRVEGEVPESVDVPQDDAQTGDLGIDGIELKQEPEEKNRDRDR 364

Query: 402 DIDHAETEDGHGWYDQPEHGQRHPDTDHDPQYNDHFEHSRSRGQ-HDHPEDH-RDEDRYD 457
           + D  +  D     D+ +  + H D + D       +  R R +  D   DH R+ DR D
Sbjct: 365 ERDREKDRDKDRDRDR-DRRRSHRDRERDKDRERDRDRRRDRDRDRDRDRDHKRERDRGD 424

[Close]

BLAST of Sed0017755 vs. ExPASy Swiss-Prot
Match: Q1RMR2 (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus OX=9913 GN=SNRNP70 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.9e-59
Identity = 188/434 (43.32%), Postives = 238/434 (54.84%), Query Frame = 0


Query: 42  LTNNLLKLFEPRPPLEFKP-----PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGE 101
           L  NLL LF PR P+ + P     P EK    P  G+A ++  F +P D   APP  + E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPAQRKARIHLLKIEKGAEKVAEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKR 161
           T  +R  R    KIE+  ++V  EL  +   +DPN  GD +KTLFVAR+NY+TTES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 ELESYGPIKRVRLITDEVTGKPKGYAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERG 221
           E E YGPIKR+ ++  + +GKP+GYAFIEY H+RDM SAYK ADGKKIDGRRVLVDVERG
Sbjct: 125 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 184

Query: 222 RTVPNWRPRRLGGGLGTSRVGGEDNNQRHSGRE--QQQSGAPSRSEEPRAREDRHGERD- 281
           RTV  WRPRRLGGGLG +R GG D N RHSGR+   +    P  S  P    DR  ER+ 
Sbjct: 185 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERER 244

Query: 282 REKSYEKGRDREREKSHERSKDRDAR-EDKPHRDRDRTRDRDRDRDRERERDRDRTRDR- 341
           RE+S E+ ++RER +S  R + R +R  DK  R R R R +D+DRDR+R   R R R R 
Sbjct: 245 RERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARR 304

Query: 342 ----------------------------------------------DRGRDRGRD----- 401
                                                         ++GRDR RD     
Sbjct: 305 ERERKEELRGGGGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRDRRRSH 364

Query: 402 ---RERHRDRDRERDRDHDGGYADPDRGRSHDRESNYDRVESKYEKDRHGDRDRDIDHAE 412
              RER RDRDR+RDR+H  G    DRGR   R       ++  E   +  RD    + E
Sbjct: 365 RSERERRRDRDRDRDREHKRGERGGDRGRDEARGGGGGGQDNGLEGLGNDGRDM---YME 424

[Close]

BLAST of Sed0017755 vs. ExPASy Swiss-Prot
Match: P08621 (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens OX=9606 GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 229.6 bits (584), Expect = 7.9e-59
Identity = 171/384 (44.53%), Postives = 224/384 (58.33%), Query Frame = 0


Query: 42  LTNNLLKLFEPRPPLEFKP-----PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGE 101
           L  NLL LF PR P+ + P     P EK    P  G+A ++  F +P D   APP  + E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPAQRKARIHLLKIEKGAEKVAEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKR 161
           T  +R  R    KIE+  ++V  EL  +   +DPN  GD +KTLFVAR+NY+TTES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 ELESYGPIKRVRLITDEVTGKPKGYAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERG 221
           E E YGPIKR+ ++  + +GKP+GYAFIEY H+RDM SAYK ADGKKIDGRRVLVDVERG
Sbjct: 125 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 184

Query: 222 RTVPNWRPRRLGGGLGTSRVGGEDNNQRHSGREQQQSGAPSRSEEPRAREDRHGERDREK 281
           RTV  WRPRRLGGGLG +R GG D N RHSGR+            P    DR  +R+RE+
Sbjct: 185 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERER 244

Query: 282 SYEKGRDREREKSHERSKDRDAREDKPHRDR-DRTRDRDRDRDRERERDRDRTRDRDRGR 341
             E+ R+R++E+   RS+ RD R     RD+ +R R R+R +D++R+R R  +R R+R R
Sbjct: 245 R-ERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR 304

Query: 342 DRGRDRERHRDRDRERDRDHDGGYADPD-----------------RGRSHDRESNYD-RV 401
                +E  R    +     + G A PD                 +GR  DRE     R 
Sbjct: 305 RERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRS 364

[Close]

BLAST of Sed0017755 vs. ExPASy Swiss-Prot
Match: Q62376 (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus OX=10090 GN=Snrnp70 PE=1 SV=2)

HSP 1 Score: 223.8 bits (569), Expect = 4.3e-57
Identity = 187/443 (42.21%), Postives = 238/443 (53.72%), Query Frame = 0


Query: 42  LTNNLLKLFEPRPPLEFKP-----PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGE 101
           L  NLL LF PR P+ + P     P EK    P  G+A ++  F +P D   APP  + E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPAQRKARIHLLKIEKGAEKVAEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKR 161
           T  +R  R    KIE+  ++V  EL  +   +DPN  GD +KTLFVAR+NY+TTES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 ELESYGPIKRVRLITDEVTGKPKGYAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERG 221
           E E YGPIKR+ ++  + +GKP+GYAFIEY H+RDM SAYK ADGKKIDGRRVLVDVERG
Sbjct: 125 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 184

Query: 222 RTVPNWRPRRLGGGLGTSRVGGEDNNQRHSGRE--QQQSGAPSRSEEPRAREDRHGERD- 281
           RTV  WRPRRLGGGLG +R GG D N RHSGR+   +    P  S  P    DR  ER+ 
Sbjct: 185 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERER 244

Query: 282 REKSYEKGRDREREKSHERSKDRDAR-EDKPHRDRDRTRDRDRDRDRERERDRDRTRDR- 341
           RE+S E+ ++RER +S  R + R +R  DK  R R R R +D+DRDR+R   R R R R 
Sbjct: 245 RERSRERDKERERRRSRSRDRRRRSRSRDKDERRRSRERSKDKDRDRKRRSSRSRERARR 304

Query: 342 -------------------------------------------------------DRGRD 401
                                                                  ++GRD
Sbjct: 305 ERERKEELRGGGGGGGGGSGGGGGGDMAEPSEAGDGAPDDGPPGELGPEGPDGPEEKGRD 364

Query: 402 RGR--------DRERHRDRDRERDRDHDGGYADPDRGRSHDRESNYDRVESKYEKDRHGD 412
           R R        +RER RDRDR+RDR+H  G    +RGR   R       ++  E    G 
Sbjct: 365 RDRERRRSHRSERERRRDRDRDRDREHKRGERGSERGRDEARGGGGSGQDNGLE--GLGS 424

[Close]

BLAST of Sed0017755 vs. ExPASy TrEMBL
Match: A0A6J1BSC4 (U1 small nuclear ribonucleoprotein 70 kDa OS=Momordica charantia OX=3673 GN=LOC111005312 PE=4 SV=1)

HSP 1 Score: 801.2 bits (2068), Expect = 2.4e-228
Identity = 440/511 (86.11%), Postives = 469/511 (91.78%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGETPAQRKARIHLLKIEKGAEKVAEE 120
           PPEKRKCPPL GMAQFVS+FAEP DPEYAPP+QKGETPAQR+ARIHLL+IEKGAEK AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPAQRRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRVRLITDEVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRE ESYGPIKRVRLITD+VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGED 240
           YAFIEYMHKRDMK+AYKQADG+KIDGRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGGE+
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQRHSGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDRE------REKSHERSK 300
           NNQRHSGREQQQSGAPSRSEEPR REDRHGERDREKS+EKGRDRE      RE+SHERSK
Sbjct: 241 NNQRHSGREQQQSGAPSRSEEPRGREDRHGERDREKSHEKGRDREREREKSRERSHERSK 300

Query: 301 DRDAREDKPHRDRDRTRDRDRDRDRERER----DRDRTRDRDRGRDRG--------RDRE 360
           DRD RED+ HRDRDRTRDRDRDR+RERER    DRD+TRDRDRGRDRG        RDR+
Sbjct: 301 DRDLREDRHHRDRDRTRDRDRDRERERERDRGYDRDKTRDRDRGRDRGRDYERDRDRDRD 360

Query: 361 RHRDRDRERDRDHDGGYADPDRGRSHDRESNYDRVESKYEKDRHGDRDRDIDHAETEDGH 420
           RHRDRDRERDR+H+ GY +PDRGRSHDRES+YDRVESKYEKDRHGDRDR+ID  ETEDG 
Sbjct: 361 RHRDRDRERDRNHEDGYPEPDRGRSHDRESDYDRVESKYEKDRHGDRDREIDRTETEDGR 420

Query: 421 GWYDQPEHGQRHPDTDHDPQYNDHFEHSRSRGQH-DHPEDHRDEDRYDQNDRMEEDDYHY 480
           GWYDQ EHG RHPD DHDPQY DHFEH+R RGQ+ D+PE H D+DRYDQ DRM EDDYHY
Sbjct: 421 GWYDQSEHGHRHPDPDHDPQYYDHFEHNRGRGQYDDNPEGHHDQDRYDQYDRM-EDDYHY 480

Query: 481 ERGTSESRDRERSRDLNHEYRRSERSHSREH 493
           ERGTSES D+ERSRD+NHEYRRSERSHSRE+
Sbjct: 481 ERGTSESHDKERSRDMNHEYRRSERSHSREY 510

[Close]

BLAST of Sed0017755 vs. ExPASy TrEMBL
Match: A0A6J1KS72 (U1 small nuclear ribonucleoprotein 70 kDa-like OS=Cucurbita maxima OX=3661 GN=LOC111496769 PE=4 SV=1)

HSP 1 Score: 798.5 bits (2061), Expect = 1.6e-227
Identity = 439/512 (85.74%), Postives = 470/512 (91.80%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGETPAQRKARIHLLKIEKGAEKVAEE 120
           PPEKRKCPPL GMAQFVSHFAEP DPEYAPP+Q+GETP+QR+ARIHLL+IEKGA+K AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRVRLITDEVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLNYET+ESRIKRE ESYGPIKRVRLITD+VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGED 240
           YAFIEYMHKRDMK+AYKQADG+KIDGRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGGE+
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQRHSGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDRE------REKSHERSK 300
           N+QRH+GREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDRE      RE+SH+RSK
Sbjct: 241 NSQRHAGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDREREREKSRERSHDRSK 300

Query: 301 DRDAREDKPHRDRDRTRDRDRDRDRERER------DRDRTRDRDRGRDRG--------RD 360
           D D RED+ HRDRDRTRDRDRDR++ERER      DRDRTRDRDRGRDRG        RD
Sbjct: 301 DHDLREDRHHRDRDRTRDRDRDREKERERERERGHDRDRTRDRDRGRDRGRDYERDRDRD 360

Query: 361 RERHRDRDRERDRDHDGGYADPDRGRSHDRESNYDRVESKYEKDRHGDRDRDIDHAETED 420
           R+RHRDRDRERDRDH GGYADPDRGRSHDRES+YDRV+SKYEKDRHGDRD+DID  ETED
Sbjct: 361 RDRHRDRDRERDRDHGGGYADPDRGRSHDRESDYDRVDSKYEKDRHGDRDKDIDPGETED 420

Query: 421 GHGWYDQPEHGQRH-PDTDHDPQYNDHFEHSRSRGQHDHPEDHRDEDRYDQNDRMEEDDY 480
           GHGWYDQP HG RH PDTDHDPQY DHFEH+RSR Q+DHPE H  +DRYDQ DRM EDDY
Sbjct: 421 GHGWYDQPVHGHRHPPDTDHDPQYYDHFEHNRSREQYDHPE-HHGQDRYDQYDRM-EDDY 480

Query: 481 HYERGTSESRDRERSRDLNHEYRRSERSHSRE 492
            YERGTSE+RDRERSRDLNHEYRR++RSHSRE
Sbjct: 481 RYERGTSETRDRERSRDLNHEYRRADRSHSRE 510

[Close]

BLAST of Sed0017755 vs. ExPASy TrEMBL
Match: A0A6J1HIB1 (U1 small nuclear ribonucleoprotein 70 kDa-like OS=Cucurbita moschata OX=3662 GN=LOC111463239 PE=4 SV=1)

HSP 1 Score: 796.6 bits (2056), Expect = 6.0e-227
Identity = 437/512 (85.35%), Postives = 470/512 (91.80%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGETPAQRKARIHLLKIEKGAEKVAEE 120
           PPEKRKCPPL GMAQFVSHFAEP DPEYAPP+Q+GETP+QR+ARIHLL+IEKGA+K  EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRVRLITDEVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLNYET+ESRIKRE ESYGPIKRVRLITD+VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGED 240
           YAFIEYMHKRDMK+AYKQADG+KIDGRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGGE+
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQRHSGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDRE------REKSHERSK 300
           N+QRH+GREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDRE      RE+SH+RSK
Sbjct: 241 NSQRHAGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDREREREKSRERSHDRSK 300

Query: 301 DRDAREDKPHRDRDRTRDRDRDRDRERER------DRDRTRDRDRGRDRG--------RD 360
           DRD RED+ HRDRDRT DRDRDR++ERER      DRDRTRDRDRGRDRG        RD
Sbjct: 301 DRDLREDRHHRDRDRTIDRDRDREKERERERDRGHDRDRTRDRDRGRDRGRDYERDRDRD 360

Query: 361 RERHRDRDRERDRDHDGGYADPDRGRSHDRESNYDRVESKYEKDRHGDRDRDIDHAETED 420
           R+RHRDRDRERDRDH+GG+ADPDRGRSHDRES+YDR++SKYEKDRHGDRD+DID  ETED
Sbjct: 361 RDRHRDRDRERDRDHEGGFADPDRGRSHDRESDYDRIDSKYEKDRHGDRDKDIDPGETED 420

Query: 421 GHGWYDQPEHGQRH-PDTDHDPQYNDHFEHSRSRGQHDHPEDHRDEDRYDQNDRMEEDDY 480
           GHGWYDQP HG RH PDTDHDPQY DHFEH+RSR Q+DHPE H  +DRYDQ DRM EDDY
Sbjct: 421 GHGWYDQPAHGHRHPPDTDHDPQYYDHFEHNRSREQYDHPE-HHGQDRYDQYDRM-EDDY 480

Query: 481 HYERGTSESRDRERSRDLNHEYRRSERSHSRE 492
            YERGTSE+RDRERSRDLNHEYRR+ERSHSRE
Sbjct: 481 RYERGTSETRDRERSRDLNHEYRRTERSHSRE 510

[Close]

BLAST of Sed0017755 vs. ExPASy TrEMBL
Match: A0A0A0KGZ1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G502610 PE=4 SV=1)

HSP 1 Score: 789.6 bits (2038), Expect = 7.3e-225
Identity = 433/508 (85.24%), Postives = 461/508 (90.75%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT NLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGETPAQRKARIHLLKIEKGAEKVAEE 120
           PPEKRKCPPL GMAQFVS+FAEP DPEYAPP+QKGETP +R+ARIHLL+IEKGAEK AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPTERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRVRLITDEVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRE ESYGPIKRVRLITD+VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGED 240
           YAFIEYMHKRDMK+AYKQADG+KIDGRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGGE+
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQRHSGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDRE------REKSHERSK 300
           N+QRHSGREQQQSGAPSRSEEPR REDRHGERDREKSY+KGRDRE      RE SHERSK
Sbjct: 241 NSQRHSGREQQQSGAPSRSEEPRVREDRHGERDREKSYDKGRDRERDREKSREHSHERSK 300

Query: 301 DRDAREDKPHRDRDRTRDRDRDRDRERERDRDRTRDRDRGRDRG----------RDRERH 360
           +RD RED+ HRDRDRTRDRDRDRDR+RERDRDR  DRDR RDRG          RDR+RH
Sbjct: 301 ERDVREDRHHRDRDRTRDRDRDRDRDRERDRDRGYDRDRTRDRGRDRGRDYERDRDRDRH 360

Query: 361 RDRDRERDRDHDGGYADPDRGRSHDRESNYDRVESKYEKDRHGDRDRDIDHAETEDGHGW 420
           RDRDRER+RDH+GGY DPDRGRSHDR+ +YDRVESKYEKDRHGDRDRD+D AETEDG GW
Sbjct: 361 RDRDRERERDHEGGYPDPDRGRSHDRD-DYDRVESKYEKDRHGDRDRDVDRAETEDGRGW 420

Query: 421 YDQPEHGQRHPDTDHDPQYNDHFEHSRSRGQHDHPEDHRDEDRYDQNDRMEEDDYHYERG 480
           YDQPEHG  H D DHDPQY DHFEH+R RGQ+D PE HRD+DRYDQ D   +DDYHYERG
Sbjct: 421 YDQPEHG--HRDADHDPQYYDHFEHNRGRGQYDQPEGHRDQDRYDQYDDRMDDDYHYERG 480

Query: 481 TSESRDRERSRDLNHEYRRSERSHSREH 493
            SES DRERSRDLNHEY+RSERSHSRE+
Sbjct: 481 NSESHDRERSRDLNHEYKRSERSHSREY 505

[Close]

BLAST of Sed0017755 vs. ExPASy TrEMBL
Match: A0A1S3B1S2 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucumis melo OX=3656 GN=LOC103485041 PE=4 SV=1)

HSP 1 Score: 789.6 bits (2038), Expect = 7.3e-225
Identity = 437/508 (86.02%), Postives = 465/508 (91.54%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT NLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGETPAQRKARIHLLKIEKGAEKVAEE 120
           PPEKRKCPPL GMAQFVS+FAEP DPEYAPP+QKGETPA+R+ARIHLL+IEKGAEK AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRVRLITDEVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRE ESYGPIKRVRLITD+VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGED 240
           YAFIEYMHKRDMK+AYKQADG+KIDGRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGGE+
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQRHSGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDREREK------SHERSK 300
           N+QRHSGREQQQSGAPSRSEEPRAREDRHGERDREKSY+KGRDRERE+      SHERSK
Sbjct: 241 NSQRHSGREQQQSGAPSRSEEPRAREDRHGERDREKSYDKGRDREREREKSREHSHERSK 300

Query: 301 DRDAREDKPHRDRDRTRDRDRDRDRERERDR--DRTRDRDRGRDRG------RDRERHRD 360
           +RD RED+ HRDRDRTRDRDRDRDRER+RDR  DR R RDRGRDRG      RDR+RHRD
Sbjct: 301 ERDVREDRHHRDRDRTRDRDRDRDRERDRDRGYDRDRTRDRGRDRGRDYERDRDRDRHRD 360

Query: 361 RDRERDRDHDGGYADPDRGRSHDRESNYDRVESKYEKDRHG--DRDRDIDHAETEDGHGW 420
           RDRERDRDH+GGY DPDRGRSHDR+ +YDRVESKYEKDRHG  DRDRD+D AETEDG GW
Sbjct: 361 RDRERDRDHEGGYPDPDRGRSHDRD-DYDRVESKYEKDRHGDRDRDRDMDRAETEDGRGW 420

Query: 421 YDQPEHGQRHPDTDHDPQYNDHFEHSRSRGQHDHPEDHRDEDRYDQNDRMEEDDYHYERG 480
           YDQPEHG  H D DHDPQY DHFEH+R RGQ+D PE HRD+DRYDQ D   +DDYHYERG
Sbjct: 421 YDQPEHG--HRDADHDPQYYDHFEHNRGRGQYDQPEGHRDQDRYDQYDDRMDDDYHYERG 480

Query: 481 TSESRDRERSRDLNHEYRRSERSHSREH 493
            SES DRERSRDLNHEY+RSERSHSRE+
Sbjct: 481 NSESHDRERSRDLNHEYKRSERSHSREY 505

[Close]

BLAST of Sed0017755 vs. TAIR 10
Match: AT3G50670.1 (U1 small nuclear ribonucleoprotein-70K )

HSP 1 Score: 436.4 bits (1121), Expect = 3.0e-122
Identity = 286/500 (57.20%), Postives = 338/500 (67.60%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60
           MGD  D F+RN NAAVQAR K QNRA+VLQLKL+GQSHPTGLTNNLLKLFEPRPPLE+KP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGETPAQRKARIHLLKIEKGAEKVAEE 120
           PPEKRKCPP  GMAQFVS+FAEPGDPEYAPP  + E P+Q++ RIH L++EKG EK AE+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRVRLITDEVTGKPKG 180
           L KY   +DPN TGDPYKTLFV+RLNYE++ES+IKRE ESYGPIKRV L+TD++T KPKG
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKG 180

Query: 181 YAFIEYMHKRDMKSAYKQADGKKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGED 240
           YAFIEYMH RDMK+AYKQADG+KIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGG +
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGE 240

Query: 241 NNQRHSGREQQQSGAPSRSEEP-RAREDRHGERDREKSYEKGRDREREKSHERSKDRDAR 300
                   EQQ  G  S+SEEP R RE+R   R++ K  E+ R+   E+  ERS+DR  R
Sbjct: 241 ----EIVGEQQPQGRTSQSEEPSRPREEREKSREKGKERERSRELSHEQPRERSRDR-PR 300

Query: 301 EDKPHRDRDR-TRDRDRDRDRERERDRDR----TRDRDRGRDRGRDRERHRDRDRERDRD 360
           EDK HRDRD+  RDRDRD  R+R+R RDR     RDRDRGRDR   R+  RDR R+++RD
Sbjct: 301 EDKHHRDRDQGGRDRDRDSRRDRDRTRDRGDRDRRDRDRGRDR-TSRDHDRDRSRKKERD 360

Query: 361 HDGG-YADPDRGRSHDRESNYDRVESKYEKDRHGDRDRDIDHAETEDGHGWYDQPEHGQR 420
           ++GG Y     GRS +R++ Y                      E E+  G+Y+       
Sbjct: 361 YEGGEYEHEGGGRSRERDAEY--------------------RGEPEETRGYYE------- 420

Query: 421 HPDTDHDPQYNDHFEHSRSRGQHDHPEDHRDEDRYDQN-DRMEEDDYHYERGTSESRDRE 480
                                     +D  D DRY    D+MEEDD+ YER         
Sbjct: 421 --------------------------DDQGDTDRYSHRYDKMEEDDFRYER--------- 425

Query: 481 RSRDLNHEYRRSERSHSREH 493
                  EY+RS+RS SRE+
Sbjct: 481 -------EYKRSKRSESREY 425

[Close]

BLAST of Sed0017755 vs. TAIR 10
Match: AT3G50670.2 (U1 small nuclear ribonucleoprotein-70K )

HSP 1 Score: 266.5 bits (680), Expect = 4.1e-71
Identity = 128/167 (76.65%), Postives = 145/167 (86.83%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60
           MGD  D F+RN NAAVQAR K QNRA+VLQLKL+GQSHPTGLTNNLLKLFEPRPPLE+KP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLLGMAQFVSHFAEPGDPEYAPPIQKGETPAQRKARIHLLKIEKGAEKVAEE 120
           PPEKRKCPP  GMAQFVS+FAEPGDPEYAPP  + E P+Q++ RIH L++EKG EK AE+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRV 168
           L KY   +DPN TGDPYKTLFV+RLNYE++ES+IKRE ESYGPIKRV
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRV 167

[Close]

BLAST of Sed0017755 vs. TAIR 10
Match: AT2G43370.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 70.5 bits (171), Expect = 4.3e-12
Identity = 91/284 (32.04%), Postives = 127/284 (44.72%), Query Frame = 0


Query: 129 DPNVTGDPYKTLFVARLNYETTESRIKRELESYGPIKRVRLITDEVTGKPKGYAFIEYMH 188
           D    GDPY TLFV RL++ TTE  ++  +  YG IK +RL+   VTG  +GY F+EY  
Sbjct: 55  DSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYET 114

Query: 189 KRDMKSAYKQADGKKIDGRRVLVDVERGRTVPNWRPRRLGGGL------GTSRVGGEDNN 248
           +++M  AY+ A    IDGR ++VD  R + +P W PRRLGGGL      G  R GG D  
Sbjct: 115 EKEMLRAYEDAHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRDRP 174

Query: 249 QR-------------------HSGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRD 308
            R                     GR   ++  PS      +  DR  E  REKS  +  +
Sbjct: 175 FRAPLRPIPHEDLKKLGIQLPPEGRYMSRTQIPSPPRRKGSVSDREEEYYREKSSVEREE 234

Query: 309 REREKSHERSKDRDAREDKPHRDRDRTRDRDRDRDRERER-DRDRTRDRDRGRDRGRDRE 368
             +E+S  RS          HR    T    R R ++RE   R+ +R   + R RG + +
Sbjct: 235 EFKERSSLRSY-------HSHRSSAHTHSSHRRRSKDREECSREESRSDRKERARGME-D 294

Query: 369 RHRDRDRERDRDHDGGYADPDRGRSHDRESNYDRVESKYEKDRH 387
           R+ D   E         ++ DR R   +          Y +D H
Sbjct: 295 RYGDNKGEVSGSKRSKRSEEDRSRKRHKHLPSHHHRRSYSQDHH 330

The following BLAST results are available for this feature:

BLAST of Sed0017755 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881482.1	2.2e-228	86.61	U1 small nuclear ribonucleoprotein 70 kDa [Benincasa hispida]	[more]
XP_022132461.1	5.0e-228	86.11	U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia]	[more]
XP_023517571.1	1.1e-227	85.58	U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita pepo subsp. pepo] >XP_...	[more]
XP_023003041.1	3.2e-227	85.74	U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita maxima] >XP_023003042....	[more]
XP_022962873.1	1.2e-226	85.35	U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita moschata] >XP_02296287...	[more]

BLAST of Sed0017755 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42404	4.2e-121	57.20	U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana OX=3702 GN=RNU...	[more]
Q66II8	8.4e-61	43.79	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp...	[more]
Q1RMR2	7.9e-59	43.32	U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus OX=9913 GN=SNRNP70 PE=2 ...	[more]
P08621	7.9e-59	44.53	U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens OX=9606 GN=SNRNP70 PE=...	[more]
Q62376	4.3e-57	42.21	U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus OX=10090 GN=Snrnp70 PE...	[more]

BLAST of Sed0017755 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSC4	2.4e-228	86.11	U1 small nuclear ribonucleoprotein 70 kDa OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1KS72	1.6e-227	85.74	U1 small nuclear ribonucleoprotein 70 kDa-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1HIB1	6.0e-227	85.35	U1 small nuclear ribonucleoprotein 70 kDa-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0KGZ1	7.3e-225	85.24	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G502610 PE=4 SV...	[more]
A0A1S3B1S2	7.3e-225	86.02	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucumis melo OX=3656 GN=LOC10348504...	[more]

BLAST of Sed0017755 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50670.1	3.0e-122	57.20	U1 small nuclear ribonucleoprotein-70K	[more]
AT3G50670.2	4.1e-71	76.65	U1 small nuclear ribonucleoprotein-70K	[more]
AT2G43370.1	4.3e-12	32.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 139..212 e-value: 6.2E-23 score: 92.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 140..209 e-value: 1.1E-18 score: 66.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 138..216 score: 17.404068
IPR022023	U1 small nuclear ribonucleoprotein of 70kDa N-terminal	PFAM	PF12220	U1snRNP70_N	coord: 41..129 e-value: 6.0E-15 score: 55.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 126..250 e-value: 8.3E-37 score: 128.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..492
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 220..492
None	No IPR available	PANTHER	PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	coord: 1..356
None	No IPR available	PANTHER	PTHR13952:SF22	SUBFAMILY NOT NAMED	coord: 1..356
IPR034143	snRNP70, RNA recognition motif	CDD	cd12236	RRM_snRNP70	coord: 137..227 e-value: 1.50429E-54 score: 175.898
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 127..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017755.1	Sed0017755.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0071004	U2-type prespliceosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0030619	U1 snRNA binding
molecular_function	GO:0003676	nucleic acid binding