Sed0017747 (gene) Chayote v1

Overview


Name	Sed0017747
Type	gene
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S26
Location	LG03: 2061031 .. 2063647 (+)
RNA-Seq Expression	Sed0017747
Synteny	Sed0017747

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTCTTGGGCCAAGAATGAAAAACAGAACAAGGTCAGGTCTGTTCCTCTCCATATAAAAGGATCACTACCGCACGTTACAAACCCTAATTCTGCCGACGAGCTCTCTCATTCTCTGTGCTTCACTGGTTCATCTCACGGACTTGAATCATGGTAAACCCTAATCTACAGCCCTTCCATTTCGATTTCTTTTTCGTTTCATAATTTTCTGTAACAATTTCTCTTTTGATCCAGACGTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGCCATGTGAAGTTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCTAAGGTACTTAGGTTTTTTTTCTTTTCTTTTTAGATTCCTCTTTTTCCTTGATATGTTGTTGATGCTGACAAATAGGTATTGGTTTATCTTTCTATTGCTATTGTTGGTCTGTTGTTGTCAAACCATGTATACGTCGATTGTTCAATATAATTGTTTTCATTTCGTCCCATCACTGTTATTGCAAGTTCATCAGTTTTTTTTTTCTTTTTCTGCTCTGTTGCTGCCGTTCTTAGCATTTTAAGGTTATATAGATTGAGGTTTACTACATAATTGCAATTCTTAGGTCTTGTTTGATAACTATTTTGATTTTTGAAATTAAGCCTACAAAAGCTACCTTACTCTATGTTTTTTCTTGCTTGGATATCTACATCTTGTCTATACTTTTAGAAATCAAACCAAAATTTGGGGGGGGGGAATAGCTTCCAAATGTTTGTTTTTTTGAAGTTTGGTTAACATTCACCTACTTTCGTAAGGTAAGATGAATATATTGTAGGAAAGATGAGCTCATGATCAGAAATTTGAGTAAAAAATAGTTTAGATTTTGAAAACCTAAAACATAAGACCAAATTGTTATTGAATGAGGCCTTATTATTTTCCTGCTCTGCTATTCCAATTCTGCATTGTTTGGAGTTTCTAATGTTGGGATTTATTATTGGTGCGAATAGGACAAAGCCATCAAGAGGTTTCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCATGTGTCTATGATCGTATGATCCTGTTTTGAAAATATTTTTCCTTGATATTTCAATGTTGCAACTCGAGTGAAATTTTTGGTGATTAATGTTTTTGGTACAGAATACACTCTTCCTAAGCTGTATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCCCATGTTGTGAGGGTTCGATCACGAACTGACAGAAGGAAACGTGAGCCTCCACAGCGCTTCATTCGACGCAGGGTATATCTCTATTCAGCTTACTTTTTTCTGTTTTTTTAAAAAAATTTATTTTCAAGTTTTTCAATGTTTGATTATACGAGCCTTCCAACAGTATGTTTTATTTTTTGCTTCCGTTATACTCACCTTTATAGCTTTTCTGGTTCACAAACTAAATTAGCTTCTTCTAAGTTATGAATGAATTTTATGATATGGCCTTCTAGAAAATTGACTCTTGTGTTATGTTGTGATTGTTATTACTTAGTGTTCTAAAGCATTCTGAGTTAATCATGATGAAATTGTTTCTTATCTGAAAAAGAACTATTTTGAGTTCATCAAGGTGTAGTGTAATAAGAGGGAATAACTCTGATTTTCAAAAATTTATTAATGATCAAAATAAGAGGGGATGAGCTCATCTAGGGGTTATTCCTGTCAACCAAATGCTAAGCTCTTGTACAGTTAACTTGTAAAATTAGTTGAGGTTTGCAAGATGGCTTGGGCACACCCATTTTAAAACAAAATTCGTTGTGCCAATGATGTTCCTTCAAATCTTTCAGATTTTTTCTTCATATTTTTTTTTAACAATTTTTCTGTATCAAAAGCCTCTGTTCTCAATTGAAGTAGCTCTTGAGATTATTCTCTTGTGCTGTGAAGAACAAGAAGGTATAGCAAAGGCTGAGATATCGTTTCAATCGTCATGAATAATTGGTTGACGATTTGATTGTTGCTCATCTACATTATTTGTTTTCAATAAAAAATTGCAATTGGATCATTGTTATTGTATTATTTGTCTTGCATTTCATGATTCTAATATAGCATCATAGAATTTCTCTTCGTATGTGTAATAACAACGTCATTGGCTGGGTCATTAAACTTTTACTTGCATTCTTCTATCCCAACTGTTTTTTTTTTACTACAGATTGGTATATTAAGGATGCTGTACTGTTGTTTACTTGATATTTAAACCAACTTTATCATATAGTGTTGTTTTATTTGTTTGTGTACTTTGAGAATTCATGGTTCTTCTTTTTTGAATCTGTTTCTATTATTAGTGCTTAATTTCAATGTTGAATGTTTGTCTGGATTTTCAGGATGATGCCCCAAAACCCGGACAGCCAGGTCAGGCCCCTCGTGCAGGTGCTGGAGCTCCTCCTCCCCGTGCTTGAATTCGATATCTTATATGCTCTTTAATTTCACCATGGTTGCTCAAATTTCATGGACTTCAATTTTCTTTAGGAATTTTCGATATATTTTGAAGATTTTGTTTTGAGTTATGGAATTATGATGCTGTACTTCTGAAATCTGATCAATATTTGGTTTAACAAGGTCTTGTTATTGACTCGATT

mRNA sequence

GTCTCTTGGGCCAAGAATGAAAAACAGAACAAGGTCAGGTCTGTTCCTCTCCATATAAAAGGATCACTACCGCACGTTACAAACCCTAATTCTGCCGACGAGCTCTCTCATTCTCTGTGCTTCACTGGTTCATCTCACGGACTTGAATCATGACGTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGCCATGTGAAGTTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAAGCCATCAAGAGGTTTCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCATGTGTCTATGATCAATACACTCTTCCTAAGCTGTATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCCCATGTTGTGAGGGTTCGATCACGAACTGACAGAAGGAAACGTGAGCCTCCACAGCGCTTCATTCGACGCAGGGATGATGCCCCAAAACCCGGACAGCCAGGTCAGGCCCCTCGTGCAGGTGCTGGAGCTCCTCCTCCCCGTGCTTGAATTCGATATCTTATATGCTCTTTAATTTCACCATGGTTGCTCAAATTTCATGGACTTCAATTTTCTTTAGGAATTTTCGATATATTTTGAAGATTTTGTTTTGAGTTATGGAATTATGATGCTGTACTTCTGAAATCTGATCAATATTTGGTTTAACAAGGTCTTGTTATTGACTCGATT

Coding sequence (CDS)

ATGACGTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGCCATGTGAAGTTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAAGCCATCAAGAGGTTTCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCATGTGTCTATGATCAATACACTCTTCCTAAGCTGTATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCCCATGTTGTGAGGGTTCGATCACGAACTGACAGAAGGAAACGTGAGCCTCCACAGCGCTTCATTCGACGCAGGGATGATGCCCCAAAACCCGGACAGCCAGGTCAGGCCCCTCGTGCAGGTGCTGGAGCTCCTCCTCCCCGTGCTTGA

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPRAGAGAPPPRA

Homology

[Close]

BLAST of Sed0017747 vs. NCBI nr
Match: XP_038884330.1 (40S ribosomal protein S26-3-like [Benincasa hispida] >XP_038884435.1 40S ribosomal protein S26-3-like [Benincasa hispida])

HSP 1 Score: 253.4 bits (646), Expect = 1.0e-63
Identity = 125/129 (96.90%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPRA 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAPKPGQPGQAPR 
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120

Query: 121 GAGAPPPRA 130
           GAG  PPRA
Sbjct: 121 GAGGAPPRA 129

[Close]

BLAST of Sed0017747 vs. NCBI nr
Match: XP_022923523.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022989973.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023529343.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.4 bits (646), Expect = 1.0e-63
Identity = 127/130 (97.69%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPR- 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDD PKPGQPGQAPR 
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120

Query: 121 -AGAGAPPPR 129
            AGAGAPPPR
Sbjct: 121 GAGAGAPPPR 130

[Close]

BLAST of Sed0017747 vs. NCBI nr
Match: XP_008456772.1 (PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo] >KAA0052010.1 40S ribosomal protein S26-3-like [Cucumis melo var. makuwa] >TYK04549.1 40S ribosomal protein S26-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 251.1 bits (640), Expect = 5.0e-63
Identity = 124/129 (96.12%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPRA 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAPKPGQPGQ PR 
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGAPPPRA 130
           GAG  PPRA
Sbjct: 121 GAGGAPPRA 129

[Close]

BLAST of Sed0017747 vs. NCBI nr
Match: KAG6602587.1 (40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251.1 bits (640), Expect = 5.0e-63
Identity = 126/130 (96.92%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPR- 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDD PKPGQPG APR 
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGPAPRV 120

Query: 121 -AGAGAPPPR 129
            AGAGAPPPR
Sbjct: 121 GAGAGAPPPR 130

[Close]

BLAST of Sed0017747 vs. NCBI nr
Match: XP_004138397.1 (40S ribosomal protein S26-3 [Cucumis sativus] >KGN45831.1 hypothetical protein Csa_005395 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 1.1e-62
Identity = 124/129 (96.12%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPRA 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQ GQ PR 
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120

Query: 121 GAGAPPPRA 130
           GAG  PPRA
Sbjct: 121 GAGGAPPRA 129

[Close]

BLAST of Sed0017747 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.6e-54
Identity = 108/130 (83.08%), Postives = 114/130 (87.69%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPRA 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 GAGAP-PPRA 130
             GAP  PRA
Sbjct: 121 AGGAPAAPRA 130

[Close]

BLAST of Sed0017747 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 211.5 bits (537), Expect = 5.8e-54
Identity = 106/125 (84.80%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPR- 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 AGAGA 125
           AG GA
Sbjct: 121 AGPGA 125

[Close]

BLAST of Sed0017747 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 211.5 bits (537), Expect = 5.8e-54
Identity = 106/125 (84.80%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPR- 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 AGAGA 125
           AG GA
Sbjct: 121 AGPGA 125

[Close]

BLAST of Sed0017747 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 192.6 bits (488), Expect = 2.8e-48
Identity = 97/127 (76.38%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPRA 120
            Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR R PP+RF RRR+D P      Q PR 
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDRP------QGPRP 120

Query: 121 GAGAPPP 128
           G GAP P
Sbjct: 121 GGGAPAP 120

[Close]

BLAST of Sed0017747 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 7.6e-38
Identity = 80/118 (67.80%), Postives = 91/118 (77.12%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAP 119
           QY LPKLY K+ YC++CAIHS VVR RSR  RR R PP RF  +R  A +PG PG  P
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF-GQRAAAARPGAPGPRP 117

[Close]

BLAST of Sed0017747 vs. ExPASy TrEMBL
Match: A0A6J1JRW7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111487002 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 4.9e-64
Identity = 127/130 (97.69%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPR- 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDD PKPGQPGQAPR 
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120

Query: 121 -AGAGAPPPR 129
            AGAGAPPPR
Sbjct: 121 GAGAGAPPPR 130

[Close]

BLAST of Sed0017747 vs. ExPASy TrEMBL
Match: A0A6J1E9V7 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111431192 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 4.9e-64
Identity = 127/130 (97.69%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPR- 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDD PKPGQPGQAPR 
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120

Query: 121 -AGAGAPPPR 129
            AGAGAPPPR
Sbjct: 121 GAGAGAPPPR 130

[Close]

BLAST of Sed0017747 vs. ExPASy TrEMBL
Match: A0A5A7UA01 (40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001770 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.4e-63
Identity = 124/129 (96.12%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPRA 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAPKPGQPGQ PR 
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGAPPPRA 130
           GAG  PPRA
Sbjct: 121 GAGGAPPRA 129

[Close]

BLAST of Sed0017747 vs. ExPASy TrEMBL
Match: A0A1S3C4P8 (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496615 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.4e-63
Identity = 124/129 (96.12%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPRA 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAPKPGQPGQ PR 
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGAPPPRA 130
           GAG  PPRA
Sbjct: 121 GAGGAPPRA 129

[Close]

BLAST of Sed0017747 vs. ExPASy TrEMBL
Match: A0A0A0KDG9 (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_6G014520 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.4e-63
Identity = 124/129 (96.12%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPRA 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQ GQ PR 
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120

Query: 121 GAGAPPPRA 130
           GAG  PPRA
Sbjct: 121 GAGGAPPRA 129

[Close]

BLAST of Sed0017747 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 212.6 bits (540), Expect = 1.9e-55
Identity = 108/130 (83.08%), Postives = 114/130 (87.69%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPRA 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 GAGAP-PPRA 130
             GAP  PRA
Sbjct: 121 AGGAPAAPRA 130

[Close]

BLAST of Sed0017747 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 211.5 bits (537), Expect = 4.1e-55
Identity = 106/125 (84.80%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPR- 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 AGAGA 125
           AG GA
Sbjct: 121 AGPGA 125

[Close]

BLAST of Sed0017747 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 211.5 bits (537), Expect = 4.1e-55
Identity = 106/125 (84.80%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQPGQAPR- 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 AGAGA 125
           AG GA
Sbjct: 121 AGPGA 125

The following BLAST results are available for this feature:

BLAST of Sed0017747 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884330.1	1.0e-63	96.90	40S ribosomal protein S26-3-like [Benincasa hispida] >XP_038884435.1 40S ribosom...	[more]
XP_022923523.1	1.0e-63	97.69	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022989973.1 40S riboso...	[more]
XP_008456772.1	5.0e-63	96.12	PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo] >KAA0052010.1 40S rib...	[more]
KAG6602587.1	5.0e-63	96.92	40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004138397.1	1.1e-62	96.12	40S ribosomal protein S26-3 [Cucumis sativus] >KGN45831.1 hypothetical protein C...	[more]

BLAST of Sed0017747 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYK9	2.6e-54	83.08	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49206	5.8e-54	84.80	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	5.8e-54	84.80	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
P49216	2.8e-48	76.38	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
O45499	7.6e-38	67.80	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of Sed0017747 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JRW7	4.9e-64	97.69	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111487002 PE=3 SV=1	[more]
A0A6J1E9V7	4.9e-64	97.69	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111431192 PE=3 SV=...	[more]
A0A5A7UA01	2.4e-63	96.12	40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3C4P8	2.4e-63	96.12	40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496615 PE=3 SV=1	[more]
A0A0A0KDG9	5.4e-63	96.12	40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_6G014520 PE=3 SV=1	[more]

BLAST of Sed0017747 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56340.1	1.9e-55	83.08	Ribosomal protein S26e family protein	[more]
AT2G40510.1	4.1e-55	84.80	Ribosomal protein S26e family protein	[more]
AT2G40590.1	4.1e-55	84.80	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 1..106 e-value: 1.2E-54 score: 183.3
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 1..127
IPR000892	Ribosomal protein S26e	PROSITE	PS00733	RIBOSOMAL_S26E	coord: 73..80
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 1..114 e-value: 1.4E-58 score: 198.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..129
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017747.1	Sed0017747.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome