Sed0017713 (gene) Chayote v1

Overview
NameSed0017713
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTrafficking protein particle complex subunit
LocationLG05: 3154752 .. 3158332 (-)
RNA-Seq ExpressionSed0017713
SyntenySed0017713
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATTAAAACCGTAAATTTTAAAATAGTATTTTTACTCGAAACAAAAAGTCTGAATTTCAGCTTCAAGCGCAGAGAGCAATTTGCCAATCATCGGAAGAGCCTTCGGCTCCGATCTGCTGCCATTGTCGCCCGCAATCATTGCTTGACCAATCTAAGAATTCGATCGATCGCTTTCTTTTCTCTGCCGCTTTAGCTCTCAGAGTTTACATCTTTCTCATTTCCGTCGTTTGATCTCGATTATCCTTCTTGAATATCCAGTCCAGGTACACTCTCTTCAATTCCCCTTTTTCTTGATCGGAACTCTGAATGAATACAACCCCAATTTGATGATAGATTTGTTTCTAACTGTAATTAGTGATTTTATAGAGAGACCAAAGGGAAATGCATATGCGTTTTTAGGTCGAGTCGCACAGATTATTGCTGAACTGAATCCCGATGTGGTTCCGTTTCTAGATTTCGCACATTGTTGATTTAGGGTTTCCCATTTAATCTCACGTATTGAAGTAGAAGCAGAGAACAACTGAATGTTTCTGTTGCTTTGCTAGGTTATGATTGTAGGGTTGAGTGAAATGTTGAGGGGGTTTTTGTCAAAATCTCAGATTTGTTGATAACTTTGGCACGATCATTGATTTGGTTTGGTTCTTTTTTTTGTAAAGGAGTTATGCAATTCTTTGGTGGATCAGAGATTAGCCCTTCCCCTCCGAACCCGACAGAAACTGGAAACAATGTGCATATGGTGTATATTTTCAATAGGAATGGAATTTGCTTGTTCTACAAGGAATGGAATCGGCCTCTTCGGACATTGAATCCTCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTTTCCCTCAAATCATTTACTGCCAAGATGGACCCAACCAGGTTTATCATTTTTCCTTCACTGAGTAACAATTCTGGCTTAAGAATGATTAAAACAACCAACCATCATGGATAGCCTAATGGTCAAAAGGATCTTAAGATACCAGAAGATTATGGGTTACCTAGAAATTAATTTTCTACGGGTTTTCTTGATATACAAATGCTATAGGGTCAGATGTTATGTCCCGTGAGAACAGTTGAGGTGCGTGTAAGCTGGCCTTGACACTCACGAATATAAAAAAATGATAAAAACAACCAGATTTTTTACTTAATAACTTTGCAAATGCATTGACTTTCTTATGTTTGGTGAATGACTAATAAGATACGTAATTTGATTGTAGATTTTGATTTTGACAATTTTTGTTCTGTGCTTCTTTCAGGAGTTTGATTTTGAAATGATAGCTTTCTTTTCTATCTGTGTTTTTTTGGAACAGTGCCAATAAAGGCAATCTTGGGGTGCCTCAGGTACCTGGACAAGGTTGTTCATTTCACAGTTTTCGTACAAATACCTACAAGCTCAGTTTTACTGAAACTCCTTCAGGGATAAAGGTAACTTAACCTTCCTCCATATGTGATCTTCTATATTTGTGACTATTGTTTCGTTCCTATGTACTTGAACTGTTAAGTGAAATATCTTGATATACGGATACGGCATGAGGAGCAAACGACGTACGAATTATTGAGATTTAATGAAACTAGTATTTTTCTTGTCATTTATTGCTGTTATCATATCATGGTTATTTGACTAGGTAGATCGAAGTGTTAAAAGCTTCATTTAACTTGTTCTTATGAAGAACTTAAGTTTTGATTCGTAACTGGGGGAATTGTTCTTACTTTCTGTCTTATTCTTATAAAGATCAGTTTCCTTAATGATAATTGGTACTTCCAACAAACAACTTTTTTGTTTCTTTTTTATTCTTGAAGAGTTAGTTGGCTTCTTGGAATAAGCCCTGTGAAGCTGCTGCTATTGTAAAATTGGTACTGCTTTTGAAAAATAATTGACCTATGGTGCAAAATGGGGATCCTTGCCTTGAACAATAGTGTTGCATTGCTTGATTGATAACTTAGTTTAAGGTTCAATTTTGTGTGAATTGTGGATTATTTCTTTTGTTTTCAGATTATCCTGGTTACGCATCCTAGAACCGGTGATCTAAGGGACGCATTAAAGTACATATACAACTTGTATGTTGAATATGTAGTGAAAAATCCACTCTACAGTCCAGGAACCTCAGTCAGGTAAATTGTTAGCTTTGGTTGGTGCATAATTCCTGTATACCAACTGTAGTAATTTAATTGAAAGAACATATTGAAGTTTTGCTAAATAAAATCAATATCTTTGATGAATTGGAACTTTGTAATGCATGCATCGATTTGTTTCAGTTTACAAATGATTAAATAACGTCTGGCATAAGGAAATTTATTATGGGTGCTTGCACCTAAACTATAACTACTTTAAATCTGTTTCAGAGGCCTTTTTATGGATTTCTTTTTGCTTTAGATATACCTTATATTTAACCAATATAGGTTGACCCAGTGGTTAAAGAGAGCCTTTGAAGATCTAAGAGGTTTTGAGTTCAAATTATGGTAGGCACCCACTTAAGAAATAATTTACAAAAGATTTTTTTGGCATCCAATGTTGTGGGGTGAGGTGGCATGTCTCGTGAGGTGAGAATTGCGCGTTAGCTCGCCCAAATACTCACGGATATAAAAAATTAATTAAAAAAAAATATATACCTTATATTTGAATAGCATCTCATCGCCCTTTTCCCCTTCCAAAGAAAGAGTTGTATAATAAGCTATTGACAATCTTGTTTGGGGAGATTTAACAAATCTATATGGACTATGATGAAACGTTTAAACCATATAGTCAAATTTGAAACCAAACTCAAACTATATAGACTGAACGATAAATTTATTCCTTCTTTTACCAGAAAGTTTGACATTGGAGGCATATATCCTTTCCTTAACTTTTCCAATTTACCCTAAACAATCCATGCTCGCTATGATACAGTTTTTAGGATGAAAATAAAGTTATTCTTGTCTGTCCTGGCAACACAATAGCGACACTCAGCTTGATTAATCATTTGATTTTGCTTTCTACAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGGAGCATATCATAGAAATCAAAGGTAGCGACTGCTCGGCTATTTTTGTTTCATTCAAGTCGTAAACTTTATCTGCCTCATGTTGATTCGAATGTGTTTTATTGGACAACGGTGCAGTTACAGTCGATTAGAACCTTCTTGTCGAAAATGCCTTCTTGGGAGTTTCTTTTTATTTCATTGGCTGGACTCTAAAGATTGCGCCGGCATGAATTATTCAAGTATTTTTTCGTTTCCTCCCATTATTTTTGTGGTATCTTCTGGTGTTGTGTTAGTGGTGGAAAGTGAAATAAGGGAAATTCTAGTGCAGATGTTTGCAGTAGTGCAGCTACATTTCTTGTTTCATCTATTGGGAGTCCTTTGTGTAAAAATTTAAAAGGTTTCAAATGGGAGAGGATTGTGTTCAGCTTCCTTCTTAACCTTTATTTGTTTCAACTCTTTAAATAATGCTTTCTTTTTTCCATTTTGATATTTGTGAGTATCATGATTAATTTATACGCACTTCAACTATTTTCACAAGACAATCACTAAAATTGATTATATTTTGTTGTCAAGAAAA

mRNA sequence

AAAAATTAAAACCGTAAATTTTAAAATAGTATTTTTACTCGAAACAAAAAGTCTGAATTTCAGCTTCAAGCGCAGAGAGCAATTTGCCAATCATCGGAAGAGCCTTCGGCTCCGATCTGCTGCCATTGTCGCCCGCAATCATTGCTTGACCAATCTAAGAATTCGATCGATCGCTTTCTTTTCTCTGCCGCTTTAGCTCTCAGAGTTTACATCTTTCTCATTTCCGTCGTTTGATCTCGATTATCCTTCTTGAATATCCAGTCCAGGAGTTATGCAATTCTTTGGTGGATCAGAGATTAGCCCTTCCCCTCCGAACCCGACAGAAACTGGAAACAATGTGCATATGGTGTATATTTTCAATAGGAATGGAATTTGCTTGTTCTACAAGGAATGGAATCGGCCTCTTCGGACATTGAATCCTCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTTTCCCTCAAATCATTTACTGCCAAGATGGACCCAACCAGTGCCAATAAAGGCAATCTTGGGGTGCCTCAGGTACCTGGACAAGGTTGTTCATTTCACAGTTTTCGTACAAATACCTACAAGCTCAGTTTTACTGAAACTCCTTCAGGGATAAAGATTATCCTGGTTACGCATCCTAGAACCGGTGATCTAAGGGACGCATTAAAGTACATATACAACTTGTATGTTGAATATGTAGTGAAAAATCCACTCTACAGTCCAGGAACCTCAGTCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGGAGCATATCATAGAAATCAAAGTTACAGTCGATTAGAACCTTCTTGTCGAAAATGCCTTCTTGGGAGTTTCTTTTTATTTCATTGGCTGGACTCTAAAGATTGCGCCGGCATGAATTATTCAAGTATTTTTTCGTTTCCTCCCATTATTTTTGTGGTATCTTCTGGTGTTGTGTTAGTGGTGGAAAGTGAAATAAGGGAAATTCTAGTGCAGATGTTTGCAGTAGTGCAGCTACATTTCTTGTTTCATCTATTGGGAGTCCTTTGTGTAAAAATTTAAAAGGTTTCAAATGGGAGAGGATTGTGTTCAGCTTCCTTCTTAACCTTTATTTGTTTCAACTCTTTAAATAATGCTTTCTTTTTTCCATTTTGATATTTGTGAGTATCATGATTAATTTATACGCACTTCAACTATTTTCACAAGACAATCACTAAAATTGATTATATTTTGTTGTCAAGAAAA

Coding sequence (CDS)

ATGCAATTCTTTGGTGGATCAGAGATTAGCCCTTCCCCTCCGAACCCGACAGAAACTGGAAACAATGTGCATATGGTGTATATTTTCAATAGGAATGGAATTTGCTTGTTCTACAAGGAATGGAATCGGCCTCTTCGGACATTGAATCCTCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTTTCCCTCAAATCATTTACTGCCAAGATGGACCCAACCAGTGCCAATAAAGGCAATCTTGGGGTGCCTCAGGTACCTGGACAAGGTTGTTCATTTCACAGTTTTCGTACAAATACCTACAAGCTCAGTTTTACTGAAACTCCTTCAGGGATAAAGATTATCCTGGTTACGCATCCTAGAACCGGTGATCTAAGGGACGCATTAAAGTACATATACAACTTGTATGTTGAATATGTAGTGAAAAATCCACTCTACAGTCCAGGAACCTCAGTCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGGAGCATATCATAG

Protein sequence

MQFFGGSEISPSPPNPTETGNNVHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSANKGNLGVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDALKYIYNLYVEYVVKNPLYSPGTSVRCELFNTSLDQYVRSIS
Homology
[Close]
BLAST of Sed0017713 vs. NCBI nr
Match: XP_038906999.1 (trafficking protein particle complex subunit 1 [Benincasa hispida] >XP_038907000.1 trafficking protein particle complex subunit 1 [Benincasa hispida])

HSP 1 Score: 342.8 bits (878), Expect = 1.7e-90
Identity = 157/168 (93.45%), Postives = 165/168 (98.21%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPNPTETGNNVHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PT TGNNVHM+YIFNRNG+CLFY+EWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTTTGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSANKGNLGVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSA+KGNLGVPQ+PGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDALKYIYNLYVEYVVKNPLYSPGTSVRCELFNTSLDQYVRSI 169
           RTGDLRD+LKYIYNLYVEYVVKNP+YSPGT +RCELFNTSLDQYVRSI
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRSI 168

[Close]
BLAST of Sed0017713 vs. NCBI nr
Match: XP_008437540.1 (PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo] >XP_008437541.1 PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo])

HSP 1 Score: 341.3 bits (874), Expect = 4.9e-90
Identity = 157/168 (93.45%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPNPTETGNNVHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PT TGNNVHM+YIFNRNG+CLFY+EWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSANKGNLGVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS +KGNLGVPQ+PGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDALKYIYNLYVEYVVKNPLYSPGTSVRCELFNTSLDQYVRSI 169
           RTGDLRD LKYIYNLYVEYVVKNPLYSPGT +RCELFNTSLDQYVRSI
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYVRSI 168

[Close]
BLAST of Sed0017713 vs. NCBI nr
Match: XP_004145907.1 (trafficking protein particle complex subunit 1 [Cucumis sativus] >XP_031741655.1 trafficking protein particle complex subunit 1 [Cucumis sativus] >KGN49914.1 hypothetical protein Csa_000153 [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 6.3e-90
Identity = 156/168 (92.86%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPNPTETGNNVHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PT TGNNVHM+YIFNRNG+CLFY+EWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSANKGNLGVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSA+KGNLGVPQ+PGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDALKYIYNLYVEYVVKNPLYSPGTSVRCELFNTSLDQYVRSI 169
           RTGDLRD LKYIYNLYVEYVVKNP+YSPGT +RCELFNTSLDQYVR+I
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 168

[Close]
BLAST of Sed0017713 vs. NCBI nr
Match: KAG7035651.1 (Trafficking protein particle complex subunit 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.5 bits (872), Expect = 8.3e-90
Identity = 156/169 (92.31%), Postives = 166/169 (98.22%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPNPTETGNNVHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PT TGNNVHM+YIFNR+G+CLFY+EWNRPLRTLNPQQDHKLMFGL
Sbjct: 30  MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 89

Query: 61  LFSLKSFTAKMDPTSANKGNLGVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSA+KGNLGVPQ+PGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 90  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 149

Query: 121 RTGDLRDALKYIYNLYVEYVVKNPLYSPGTSVRCELFNTSLDQYVRSIS 170
           RTGDLRD+LKYIYNLYVEY V+NPLYSPGT++RCELFNTSLDQYVRSIS
Sbjct: 150 RTGDLRDSLKYIYNLYVEYAVRNPLYSPGTTLRCELFNTSLDQYVRSIS 198

[Close]
BLAST of Sed0017713 vs. NCBI nr
Match: KAG6605747.1 (Trafficking protein particle complex subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340.5 bits (872), Expect = 8.3e-90
Identity = 156/169 (92.31%), Postives = 166/169 (98.22%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPNPTETGNNVHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PT TGNNVHM+YIFNR+G+CLFY+EWNRPLRTLNPQQDHKLMFGL
Sbjct: 44  MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 103

Query: 61  LFSLKSFTAKMDPTSANKGNLGVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSA+KGNLGVPQ+PGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 104 LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 163

Query: 121 RTGDLRDALKYIYNLYVEYVVKNPLYSPGTSVRCELFNTSLDQYVRSIS 170
           RTGDLRD+LKYIYNLYVEY V+NPLYSPGT++RCELFNTSLDQYVRSIS
Sbjct: 164 RTGDLRDSLKYIYNLYVEYAVRNPLYSPGTTLRCELFNTSLDQYVRSIS 212

[Close]
BLAST of Sed0017713 vs. ExPASy Swiss-Prot
Match: Q5NCF2 (Trafficking protein particle complex subunit 1 OS=Mus musculus OX=10090 GN=Trappc1 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-31
Identity = 68/148 (45.95%), Postives = 98/148 (66.22%), Query Frame = 0 

Query: 23  VHMVYIFNRNGICLFYKEWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSANKGNL 82
           VH +Y+F+RNG+CL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDALKYIYN-LYVEYV 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+V
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VKNPLYSPGTSVRCELFNTSLDQYVRSI 169
           VKNPL   G +V+ ELF + LD YVRS+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Sed0017713 vs. ExPASy Swiss-Prot
Match: Q2KMM2 (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus OX=10116 GN=Trappc1 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-31
Identity = 68/148 (45.95%), Postives = 98/148 (66.22%), Query Frame = 0 

Query: 23  VHMVYIFNRNGICLFYKEWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSANKGNL 82
           VH +Y+F+RNG+CL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDALKYIYN-LYVEYV 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+V
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VKNPLYSPGTSVRCELFNTSLDQYVRSI 169
           VKNPL   G +V+ ELF + LD YVRS+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Sed0017713 vs. ExPASy Swiss-Prot
Match: Q17QI1 (Trafficking protein particle complex subunit 1 OS=Bos taurus OX=9913 GN=TRAPPC1 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-30
Identity = 67/148 (45.27%), Postives = 97/148 (65.54%), Query Frame = 0 

Query: 23  VHMVYIFNRNGICLFYKEWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSANKGNL 82
           VH +Y+F+RNG+CL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDALKYIYN-LYVEYV 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE V
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VKNPLYSPGTSVRCELFNTSLDQYVRSI 169
           VKNPL   G +V+ ELF + LD YVRS+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Sed0017713 vs. ExPASy Swiss-Prot
Match: Q9Y5R8 (Trafficking protein particle complex subunit 1 OS=Homo sapiens OX=9606 GN=TRAPPC1 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-30
Identity = 67/148 (45.27%), Postives = 97/148 (65.54%), Query Frame = 0 

Query: 23  VHMVYIFNRNGICLFYKEWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSANKGNL 82
           VH +Y+F+RNG+CL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDALKYIYN-LYVEYV 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE V
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VKNPLYSPGTSVRCELFNTSLDQYVRSI 169
           VKNPL   G +V+ ELF + LD YVRS+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Sed0017713 vs. ExPASy Swiss-Prot
Match: Q557G3 (Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=trappc1-1 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.5e-30
Identity = 58/147 (39.46%), Postives = 95/147 (64.63%), Query Frame = 0 

Query: 23  VHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSANKGNLG 82
           ++ +YIFN++G C++Y++WN+  ++ N  +D KL+FG+L+SLK+F     P   +     
Sbjct: 2   IYNIYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKID----- 61

Query: 83  VPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDALKYIYN-LYVEYVV 142
                     FH ++T+TYKL + ET S IK I+++ P   DLRD LK IY+ ++VEYV+
Sbjct: 62  ------DKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVI 121

Query: 143 KNPLYSPGTSVRCELFNTSLDQYVRSI 169
           KNP+Y  GT+V+C+ F   L+ Y++ +
Sbjct: 122 KNPIYKHGTTVKCDTFINQLNLYLKQM 137

[Close]
BLAST of Sed0017713 vs. ExPASy TrEMBL
Match: A0A1S3AUA1 (Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC103482924 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.4e-90
Identity = 157/168 (93.45%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPNPTETGNNVHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PT TGNNVHM+YIFNRNG+CLFY+EWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSANKGNLGVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS +KGNLGVPQ+PGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDALKYIYNLYVEYVVKNPLYSPGTSVRCELFNTSLDQYVRSI 169
           RTGDLRD LKYIYNLYVEYVVKNPLYSPGT +RCELFNTSLDQYVRSI
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYVRSI 168

[Close]
BLAST of Sed0017713 vs. ExPASy TrEMBL
Match: A0A0A0KM26 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_5G139910 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.1e-90
Identity = 156/168 (92.86%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPNPTETGNNVHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PT TGNNVHM+YIFNRNG+CLFY+EWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSANKGNLGVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSA+KGNLGVPQ+PGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDALKYIYNLYVEYVVKNPLYSPGTSVRCELFNTSLDQYVRSI 169
           RTGDLRD LKYIYNLYVEYVVKNP+YSPGT +RCELFNTSLDQYVR+I
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 168

[Close]
BLAST of Sed0017713 vs. ExPASy TrEMBL
Match: A0A6J1DZQ0 (Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=LOC111026095 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.0e-90
Identity = 156/169 (92.31%), Postives = 164/169 (97.04%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPNPTETGNNVHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PT TGNNVHM+YIFNRNG+CLFY+EWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSANKGNLGVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSL+SFTAKMDPTS +KGNLGVPQ+PGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDALKYIYNLYVEYVVKNPLYSPGTSVRCELFNTSLDQYVRSIS 170
           RT DLRD+LKYIYNLYVEYVVKNPLYSPGT +RCELFNTSLDQYVRSIS
Sbjct: 121 RTSDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYVRSIS 169

[Close]
BLAST of Sed0017713 vs. ExPASy TrEMBL
Match: A0A6J1H402 (Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111459786 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.0e-90
Identity = 156/169 (92.31%), Postives = 166/169 (98.22%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPNPTETGNNVHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PT TGNNVHM+YIFNR+G+CLFY+EWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSANKGNLGVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSA+KGNLGVPQ+PGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDALKYIYNLYVEYVVKNPLYSPGTSVRCELFNTSLDQYVRSIS 170
           RTGDLRD+LKYIYNLYVEY V+NPLYSPGT++RCELFNTSLDQYVRSIS
Sbjct: 121 RTGDLRDSLKYIYNLYVEYAVRNPLYSPGTTLRCELFNTSLDQYVRSIS 169

[Close]
BLAST of Sed0017713 vs. ExPASy TrEMBL
Match: A0A6J1K7J0 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111491351 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 8.9e-90
Identity = 155/169 (91.72%), Postives = 166/169 (98.22%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPNPTETGNNVHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PT TGNNVHM+YIFNR+G+CLFY+EWNRPLRTLNPQQDHKLMFGL
Sbjct: 7   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 66

Query: 61  LFSLKSFTAKMDPTSANKGNLGVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSA+KGNLGVPQ+PGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 67  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 126

Query: 121 RTGDLRDALKYIYNLYVEYVVKNPLYSPGTSVRCELFNTSLDQYVRSIS 170
           RTGDLRD+LKYIYNLYVEY V+NPLY+PGT++RCELFNTSLDQYVRSIS
Sbjct: 127 RTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSIS 175

[Close]
BLAST of Sed0017713 vs. TAIR 10
Match: AT1G51160.1 (SNARE-like superfamily protein )

HSP 1 Score: 317.8 bits (813), Expect = 5.4e-87
Identity = 143/169 (84.62%), Postives = 159/169 (94.08%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPNPTETGNNVHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PT +GNN HM+Y+FNRNG+CL YKEWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSANKGNLGVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDP +A+KGNLGVPQ+PGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDALKYIYNLYVEYVVKNPLYSPGTSVRCELFNTSLDQYVRSIS 170
           +TGDLR++LKYIY+LYVEYVVKNP+YSPG+ ++ ELFNT+LDQYVRSIS
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQYVRSIS 169

[Close]
BLAST of Sed0017713 vs. TAIR 10
Match: AT1G51160.2 (SNARE-like superfamily protein )

HSP 1 Score: 317.8 bits (813), Expect = 5.4e-87
Identity = 143/169 (84.62%), Postives = 159/169 (94.08%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPNPTETGNNVHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PT +GNN HM+Y+FNRNG+CL YKEWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSANKGNLGVPQVPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDP +A+KGNLGVPQ+PGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDALKYIYNLYVEYVVKNPLYSPGTSVRCELFNTSLDQYVRSIS 170
           +TGDLR++LKYIY+LYVEYVVKNP+YSPG+ ++ ELFNT+LDQYVRSIS
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQYVRSIS 169

[Close]
BLAST of Sed0017713 vs. TAIR 10
Match: AT5G02280.1 (SNARE-like superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 7.9e-14
Identity = 43/146 (29.45%), Postives = 70/146 (47.95%), Query Frame = 0 

Query: 23  VHMVYIFNRNGICLFYKEWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSANKGNLG 82
           ++ +YI N++G  +FYK+     R      D   +  L  S+ + + ++ P +       
Sbjct: 4   IYSLYIINKSGGLIFYKDCGTKGRM--DTNDSLRVASLWHSMHAISQQLSPVN------- 63

Query: 83  VPQVPGQGCS-FHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDALKYIYNLYVEYVV 142
                  GCS       +T+ L   ++  G K  +V  P T  +   L+YIY LY +YV+
Sbjct: 64  -------GCSGIELLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVL 123

Query: 143 KNPLYSPGTSVRCELFNTSLDQYVRS 168
           KNP Y     +RCELF+ +L Q V+S
Sbjct: 124 KNPFYEIEMPIRCELFDINLTQAVQS 133

The following BLAST results are available for this feature:
BLAST of Sed0017713 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038906999.11.7e-9093.45trafficking protein particle complex subunit 1 [Benincasa hispida] >XP_038907000... [more]
XP_008437540.14.9e-9093.45PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo] >XP_008... [more]
XP_004145907.16.3e-9092.86trafficking protein particle complex subunit 1 [Cucumis sativus] >XP_031741655.1... [more]
KAG7035651.18.3e-9092.31Trafficking protein particle complex subunit 1 [Cucurbita argyrosperma subsp. ar... [more]
KAG6605747.18.3e-9092.31Trafficking protein particle complex subunit 1, partial [Cucurbita argyrosperma ... [more]
BLAST of Sed0017713 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q5NCF21.8e-3145.95Trafficking protein particle complex subunit 1 OS=Mus musculus OX=10090 GN=Trapp... [more]
Q2KMM21.8e-3145.95Trafficking protein particle complex subunit 1 OS=Rattus norvegicus OX=10116 GN=... [more]
Q17QI11.2e-3045.27Trafficking protein particle complex subunit 1 OS=Bos taurus OX=9913 GN=TRAPPC1 ... [more]
Q9Y5R81.2e-3045.27Trafficking protein particle complex subunit 1 OS=Homo sapiens OX=9606 GN=TRAPPC... [more]
Q557G34.5e-3039.46Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum OX=44... [more]
BLAST of Sed0017713 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3AUA12.4e-9093.45Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC10348... [more]
A0A0A0KM263.1e-9092.86Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_5... [more]
A0A6J1DZQ04.0e-9092.31Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1H4024.0e-9092.31Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1K7J08.9e-9091.72Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
BLAST of Sed0017713 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G51160.15.4e-8784.62SNARE-like superfamily protein [more]
AT1G51160.25.4e-8784.62SNARE-like superfamily protein [more]
AT5G02280.17.9e-1429.45SNARE-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 23..168
e-value: 1.2E-63
score: 227.4
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 23..167
e-value: 1.4E-47
score: 161.3
IPR007233Trafficking protein particle complex subunitPANTHERPTHR23249TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNITcoord: 1..168
NoneNo IPR availableGENE3D3.30.450.70coord: 22..169
e-value: 1.5E-47
score: 163.2
NoneNo IPR availablePANTHERPTHR23249:SF18TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1-LIKEcoord: 1..168
NoneNo IPR availableCDDcd14855TRAPPC1_MUM2coord: 24..164
e-value: 2.15683E-67
score: 199.31
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 23..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0017713.1Sed0017713.1mRNA
Sed0017713.2Sed0017713.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030008 TRAPP complex