Sed0017704 (gene) Chayote v1

Overview
NameSed0017704
Typegene
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
LocationLG03: 14361371 .. 14362294 (-)
RNA-Seq ExpressionSed0017704
SyntenySed0017704
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGGATTCGATTTGCAAACGATGCCACAAGCTGGCAGAGACAACTTTTCATGCTATTTGGGCGTGCAAACATGCACAAGACTCTTGGAGGGGTTCTCCGTTTCTGCACTATGGGTTTCCAAACCATGTTACAGAGGTGGCAGACTTATTTTGTTGGTTTTATGGAAAGCTTCGGTCAAAACAAATGCAAAAATTCATGATCATGTGTTGGAGGAATTGGAACTGCAGAAACATGGAAGTCAATGAGGTTTTTAAGCCTAGTGATGCTACTGATCAAAAGACATTTTATTTGCCTGCTTATGATTGGGATTATTGTAAGCAAATCTTCTTGATTTTCAGTCAGCAAACAACTTTTTGACTCATATATAGGACGAAGAAGCCCAAAGTACTTGATAAGTTGAAGCCCCTAGACGCAGTAAATTTTAAAATTAATGTTGATGCAGCAATTAATTCAGAGGATCGTCGAAGCGTGCTTGGGATGGTGATGCGAAATTGGAAGGGGGAGGCCATGGCTTCTTATTGTTGTCAGATTCCAGGGATTATAGATTCTGAGATAGCGAAGGCAATGGCAGTACGTCATGGCATGGACCTTGCGATGGATCTCGGATTTCAAAGAATTGAAATGGAGACGGATGCTTTGCATGTGGTAAATCTTCTCAACAACGAAATGCATTGTCGATCGAAAGTTGGAAGGCTTGTCGAAGAGATAAAAAGCTTAGCGAGAAACTTCTTGTTCGTGAGCTTTGGGTGGTGTGGACGAGATGCGAATTCTATTGCTCACAAGTTAGCTAAGATGAGAGCTTTTGAGAATGAGGAACAATTCTGGATGGAAGAAGTTCCAGAAATGTGCATAAGAGATTATTTGTGCGAGTTGGTGAAGGATTTCCGTCGAAGGGTGTGTGACGGACTTCAACTTTAA

mRNA sequence

ATGGAAGAGGATTCGATTTGCAAACGATGCCACAAGCTGGCAGAGACAACTTTTCATGCTATTTGGGCGTGCAAACATGCACAAGACTCTTGGAGGGGTTCTCCGTTTCTGCACTATGGGTTTCCAAACCATGTTACAGAGGTGGCAGACTTATTTTGTTGGTTTTATGGAAAGCTTCGGTCAAAACAAATGCAAAAATTCATGATCATGTGTTGGAGGAATTGGAACTGCAGAAACATGGAAGTCAATGAGGTTTTTAAGCCTAGTGATGCTACTGATCAAAAGACATTTTATTTGCCTGCTTATGATTGGGATTATTTACTTGATAAGTTGAAGCCCCTAGACGCAGTAAATTTTAAAATTAATGTTGATGCAGCAATTAATTCAGAGGATCGTCGAAGCGTGCTTGGGATGGTGATGCGAAATTGGAAGGGGGAGGCCATGGCTTCTTATTGTTGTCAGATTCCAGGGATTATAGATTCTGAGATAGCGAAGGCAATGGCAGTACGTCATGGCATGGACCTTGCGATGGATCTCGGATTTCAAAGAATTGAAATGGAGACGGATGCTTTGCATGTGGTAAATCTTCTCAACAACGAAATGCATTGTCGATCGAAAGTTGGAAGGCTTGTCGAAGAGATAAAAAGCTTAGCGAGAAACTTCTTGTTCGTGAGCTTTGGGTGGTGTGGACGAGATGCGAATTCTATTGCTCACAAGTTAGCTAAGATGAGAGCTTTTGAGAATGAGGAACAATTCTGGATGGAAGAAGTTCCAGAAATGTGCATAAGAGATTATTTGTGCGAGTTGGTGAAGGATTTCCGTCGAAGGGTGTGTGACGGACTTCAACTTTAA

Coding sequence (CDS)

ATGGAAGAGGATTCGATTTGCAAACGATGCCACAAGCTGGCAGAGACAACTTTTCATGCTATTTGGGCGTGCAAACATGCACAAGACTCTTGGAGGGGTTCTCCGTTTCTGCACTATGGGTTTCCAAACCATGTTACAGAGGTGGCAGACTTATTTTGTTGGTTTTATGGAAAGCTTCGGTCAAAACAAATGCAAAAATTCATGATCATGTGTTGGAGGAATTGGAACTGCAGAAACATGGAAGTCAATGAGGTTTTTAAGCCTAGTGATGCTACTGATCAAAAGACATTTTATTTGCCTGCTTATGATTGGGATTATTTACTTGATAAGTTGAAGCCCCTAGACGCAGTAAATTTTAAAATTAATGTTGATGCAGCAATTAATTCAGAGGATCGTCGAAGCGTGCTTGGGATGGTGATGCGAAATTGGAAGGGGGAGGCCATGGCTTCTTATTGTTGTCAGATTCCAGGGATTATAGATTCTGAGATAGCGAAGGCAATGGCAGTACGTCATGGCATGGACCTTGCGATGGATCTCGGATTTCAAAGAATTGAAATGGAGACGGATGCTTTGCATGTGGTAAATCTTCTCAACAACGAAATGCATTGTCGATCGAAAGTTGGAAGGCTTGTCGAAGAGATAAAAAGCTTAGCGAGAAACTTCTTGTTCGTGAGCTTTGGGTGGTGTGGACGAGATGCGAATTCTATTGCTCACAAGTTAGCTAAGATGAGAGCTTTTGAGAATGAGGAACAATTCTGGATGGAAGAAGTTCCAGAAATGTGCATAAGAGATTATTTGTGCGAGTTGGTGAAGGATTTCCGTCGAAGGGTGTGTGACGGACTTCAACTTTAA

Protein sequence

MEEDSICKRCHKLAETTFHAIWACKHAQDSWRGSPFLHYGFPNHVTEVADLFCWFYGKLRSKQMQKFMIMCWRNWNCRNMEVNEVFKPSDATDQKTFYLPAYDWDYLLDKLKPLDAVNFKINVDAAINSEDRRSVLGMVMRNWKGEAMASYCCQIPGIIDSEIAKAMAVRHGMDLAMDLGFQRIEMETDALHVVNLLNNEMHCRSKVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLAKMRAFENEEQFWMEEVPEMCIRDYLCELVKDFRRRVCDGLQL
Homology
BLAST of Sed0017704 vs. NCBI nr
Match: XP_023904177.1 (uncharacterized protein LOC112015942 [Quercus suber])

HSP 1 Score: 144.1 bits (362), Expect = 1.9e-30
Identity = 85/272 (31.25%), Postives = 131/272 (48.16%), Query Frame = 0

Query: 4   DSICKRCHKLAETTFHAIWACKHAQDSWRGSPFLHYGFPNHVTEVADLFCWFYGKLRSKQ 63
           ++ C  C +  E   H IW C  AQD W GS       P    ++  LF +   +L  + 
Sbjct: 230 ETFCPICLQSPENEMHVIWECPVAQDVWAGSRIKLQKCPLGQPDMVQLFLYLLHRLEPED 289

Query: 64  MQKFMIMCWRNWNCRN--MEVNEVFKPSDATDQKTFYLPAY-DWDYLLDKLKPLDAVN-- 123
           M  F++  W  W+ RN  +   ++ +P     +   +L  +      LD L+P   V   
Sbjct: 290 MALFLVQAWMLWSQRNSVLHGGKLKEPGWLNKRDVEWLEEFAQVQDQLDVLQPRATVGNV 349

Query: 124 --------FKINVDAAINSEDRRSVLGMVMRNWKGEAMASYCCQIPGIIDSEIAKAMAVR 183
                   FK+N DAAI ++  RS  G V+RN  GE MA+     P +  S+ A+ +A R
Sbjct: 350 WRPPAHPFFKMNFDAAIFNDSGRSGFGAVIRNELGEVMAALSAIGPSVSSSDEAETLACR 409

Query: 184 HGMDLAMDLGFQRIEMETDALHVVNLLNNEMHCRSKVGRLVEEIKSLARNFLFVSFGWCG 243
             M+ A+D GF  + +E D+++V+  L++     S VG +V +IK L      VSF W  
Sbjct: 410 KAMEFAVDAGFNELIIEGDSINVIKALSSSSPDLSVVGNVVADIKCLISGLRRVSFSWVN 469

Query: 244 RDANSIAHKLAKMRAFENEEQFWMEEVPEMCI 263
           RD N +AH LAK      E+ +WME+ P + +
Sbjct: 470 RDCNRVAHALAKFANSLEEDLYWMEDAPPVAL 501

BLAST of Sed0017704 vs. NCBI nr
Match: XP_030931246.1 (uncharacterized protein LOC115957168 [Quercus lobata])

HSP 1 Score: 134.0 bits (336), Expect = 2.0e-27
Identity = 81/269 (30.11%), Postives = 128/269 (47.58%), Query Frame = 0

Query: 3    EDSICKRCHKLAETTFHAIWACKHAQDSWRGSPFLHYGFPNHVTEVADLFCWFYGKLRSK 62
            EDS C  C   +ET  H +W C  AQD W GS        + +  V +L      KL  +
Sbjct: 1039 EDSTCVLCKCTSETELHVLWECGVAQDIWAGSMRKLQKGHDFLQLVEELML----KLSRE 1098

Query: 63   QMQKFMIMCWRNWNCRNMEV--NEVFKPSDATDQKTFYLPAYDWDYLLDKLKPLDA---- 122
            +++ F +  W  W  RN       +  PS    +   YL  +    +   +  + A    
Sbjct: 1099 ELELFFVQAWLIWTQRNTVTFGGVIQDPSRLVKRAGEYLEEFKMSQVQLAMSTVSARSSR 1158

Query: 123  ------VNFKINVDAAINSEDRRSVLGMVMRNWKGEAMASYCCQIPGIIDSEIAKAMAVR 182
                  +++K+N DAAI  +   S  G+V+RN  GE MA++  + P I DSE A+ +A R
Sbjct: 1159 WIPPPGLSYKLNFDAAIFQDGEASGFGVVIRNNGGEVMAAFSARGPAISDSEEAEVLACR 1218

Query: 183  HGMDLAMDLGFQRIEMETDALHVVNLLNNEMHCRSKVGRLVEEIKSLARNFLFVSFGWCG 242
              ++ A D GF  + +E D   V+N++++    +S++G L  ++  LA     +S     
Sbjct: 1219 KALEFAADSGFTELILEGDNSVVMNVISSSRMFQSRLGHLYSDVNCLATGLPVLSLSCVA 1278

Query: 243  RDANSIAHKLAKMRAFENEEQFWMEEVPE 260
            R ANS+AH LA+     NE+  W EE P+
Sbjct: 1279 RSANSVAHSLARFAQCINEDMIWPEESPQ 1303

BLAST of Sed0017704 vs. NCBI nr
Match: XP_023876296.1 (uncharacterized protein LOC111988743 [Quercus suber])

HSP 1 Score: 132.9 bits (333), Expect = 4.4e-27
Identity = 86/269 (31.97%), Postives = 137/269 (50.93%), Query Frame = 0

Query: 3   EDSICKRCHKLAETTFHAIWACKHAQDSWRGSPFLHYGFPNHVTEVADLFCWFYGKLRSK 62
           +D  C  C + AET  HA+W C  A+D W GS      + +   +V  LF     +L + 
Sbjct: 114 DDDACTLCLREAETGVHALWDCAVARDVWAGSLTRLQKWSSGQHDVLQLFHELLIRLTTD 173

Query: 63  QMQKFMIMCWRNWNCRNMEVN--EVFKPSDATDQKTFYLPAY-----DWDYLLDKLK--- 122
           + + F++  W  WN RN  V+  ++  P     +   YL  +       + LL +L    
Sbjct: 174 EFELFLVQAWLIWNQRNTVVHRGKMRDPRWLNKRAREYLSEFQQSQDQLNILLPRLNANI 233

Query: 123 ---PLDAVNFKINVDAAINSEDRRSVLGMVMRNWKGEAMASYCCQIPGIIDSEIAKAMAV 182
              P D V +K+N DAAI  E   S +G ++RN KGE MA+   + P + DSE A+ +A 
Sbjct: 234 WVAPTDPV-YKLNFDAAIFKELNCSGIGAIIRNGKGEVMAAMSAKGPLVEDSEEAETLAC 293

Query: 183 RHGMDLAMDLGFQRIEMETDALHVVNLLNNEMHCRSKVGRLVEEIKSLARNFLFVSFGWC 242
           R  ++ A+D GF  + +E D   V+  L++     S++G +V++++ LA    +VSF   
Sbjct: 294 RKAVEFAIDAGFSELVIEGDNAAVMASLSHGGPDLSRLGHVVQDVQWLATGLRWVSFSHV 353

Query: 243 GRDANSIAHKLAKMRAFENEEQFWMEEVP 259
            R AN++AH LA+      E+  W+EE P
Sbjct: 354 KRCANTVAHGLARHAKNVMEDMIWLEETP 381

BLAST of Sed0017704 vs. NCBI nr
Match: XP_023928118.1 (uncharacterized protein LOC112039474 [Quercus suber])

HSP 1 Score: 131.7 bits (330), Expect = 9.8e-27
Identity = 84/268 (31.34%), Postives = 130/268 (48.51%), Query Frame = 0

Query: 3   EDSICKRCHKLAETTFHAIWACKHAQDSWRGSPFLHYGFPNHVTEVADLFCWFYGKLRSK 62
           E+ +C  C + AE   HA+W C  A+D W GS            +V  LF    GKL   
Sbjct: 34  ENDVCVLCSREAEIGVHALWECVVAKDVWSGSMIRIQKCGQGQQDVLHLFQELLGKLSIN 93

Query: 63  QMQKFMIMCWRNWNCRNMEV--NEVFKPSDATDQKTFYLPAYDW---------DYLLDKL 122
           + + F+I  W  WN RN  V   ++  P         +L  +             L D +
Sbjct: 94  EFELFVIQSWIIWNQRNTVVFGGKLKDPKWLNKWAKEFLDEFHQAQGQLRIPVSCLGDSV 153

Query: 123 -KPLDAVNFKINVDAAINSEDRRSVLGMVMRNWKGEAMASYCCQIPGIIDSEIAKAMAVR 182
            +P     FK+N DA + S+   S +G ++RN  GE MA+   ++P ++DS +A+ +A R
Sbjct: 154 WRPPPDSTFKLNFDAVVFSKLSCSGVGAMIRNENGEVMATMLARVPHVVDSVVAEVIACR 213

Query: 183 HGMDLAMDLGFQRIEMETDALHVVNLLNNEMHCRSKVGRLVEEIKSLARNFLFVSFGWCG 242
             M  A   GF  + +E D L V+  L       S +G ++++IK L R+F  VSF +  
Sbjct: 214 RAMKFACKAGFTDLVVEGDNLSVMKSLTTSETDLSWLGHIIQDIKWLTRSFRRVSFSYVR 273

Query: 243 RDANSIAHKLAKMRAFENEEQFWMEEVP 259
           R ANS+A+ LA+     +E+ +WME+ P
Sbjct: 274 RAANSVAYGLARYAKDIHEDMYWMEDNP 301

BLAST of Sed0017704 vs. NCBI nr
Match: XP_030941688.1 (uncharacterized protein LOC115966628 [Quercus lobata])

HSP 1 Score: 130.6 bits (327), Expect = 2.2e-26
Identity = 77/270 (28.52%), Postives = 130/270 (48.15%), Query Frame = 0

Query: 3    EDSICKRCHKLAETTFHAIWACKHAQDSWRGSPFLHYGFPNHVTEVADLFCWFYGKLRSK 62
            ED  C+ C    ET  HA+W C  AQD W GS            +V  LF     +L  +
Sbjct: 901  EDEHCEVCKTALETGIHALWECPVAQDVWSGSLVRLQKCTQGYDDVLQLFGELLNRLSRE 960

Query: 63   QMQKFMIMCWRNWNCRNMEVN--EVFKPSDATDQKTFYLPAY----------DWDYLLDK 122
            + + F+ + W  WN RN  ++  ++  P     +   YL  Y               + +
Sbjct: 961  EFELFLTLSWVIWNQRNAVIHGGKIKDPGQLCKRAEVYLLEYRQAQDQLSIPSRQQSVTQ 1020

Query: 123  LKPLDAVNFKINVDAAINSEDRRSVLGMVMRNWKGEAMASYCCQIPGIIDSEIAKAMAVR 182
             +P     +K+N DAAI +E   S  G ++RN +GE MA+   + P + +SE A+A+A R
Sbjct: 1021 WQPPPIDRYKLNFDAAIFTELGCSGFGAIVRNERGEVMAALSVKGPLVWNSEEAEALACR 1080

Query: 183  HGMDLAMDLGFQRIEMETDALHVVNLLNNEMHCRSKVGRLVEEIKSLARNFLFVSFGWCG 242
              ++ A+  GF  + +E D ++V+  + +    +S++G + ++I+ L     + S     
Sbjct: 1081 RAVEFAIHAGFAELMIEGDNVNVMKAVCSNSMDKSRLGHVFQDIQCLVHGLRWSSVSCVK 1140

Query: 243  RDANSIAHKLAKMRAFENEEQFWMEEVPEM 261
            R AN +AH LA+   + +EE  W+EE P +
Sbjct: 1141 RGANGVAHSLARFARYVSEETIWLEECPPL 1170

BLAST of Sed0017704 vs. ExPASy TrEMBL
Match: A0A2N9ED81 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS466 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-28
Identity = 84/273 (30.77%), Postives = 126/273 (46.15%), Query Frame = 0

Query: 4   DSICKRCHKLAETTFHAIWACKHAQDSWRGSPFLHYGFPNHVTEVADLFCWFYGKLRSKQ 63
           D  C  C+++ ET  HA+W CK  ++ W   P+      N      +LF   +  L + +
Sbjct: 437 DPRCANCNEVNETVLHALWQCKQIREIWIAVPWSSSMLQNQYLNFMELFHHCHATLPATE 496

Query: 64  MQKFMIMCWRNWNCRNME--------VNEV----------FKPSDATDQKTFYLPAYDWD 123
           +Q F    W  W+ RN +        VN++          F  +  +   T   PA    
Sbjct: 497 LQLFATTTWLIWHQRNRQWLNQQPVPVNQLMIHAQQFLSEFLAAQVSHSSTTGPPAPPIK 556

Query: 124 YLLDKLKPLDAVNFKINVDAAINSEDRRSVLGMVMRNWKGEAMASYCCQIPGIIDSEIAK 183
            +    KP     +K N D A   E   + +G+++RN KGE MAS C +IP     E  +
Sbjct: 557 VV---WKPPQPGRYKANFDGAFFEESHEAGVGVIIRNHKGEVMASLCQRIPFPQSVEALE 616

Query: 184 AMAVRHGMDLAMDLGFQRIEMETDALHVVNLLNNEMHCRSKVGRLVEEIKSLARNFLFVS 243
           A A R  + L+ DLG + +++E D+L +VN L N   C S  G L+ + K LA++ L V 
Sbjct: 617 AYAARSAVQLSKDLGLKEVDIEGDSLTIVNDLCNPEPCYSLYGHLINDTKLLAQDGLSVL 676

Query: 244 FGWCGRDANSIAHKLAKMRAFENEEQFWMEEVP 259
           F    RD N +AH +AK        + WME VP
Sbjct: 677 FTHVKRDGNILAHSIAKKAKVSKPFEVWMESVP 706

BLAST of Sed0017704 vs. ExPASy TrEMBL
Match: A0A2N9J0V8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59068 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.3e-28
Identity = 77/271 (28.41%), Postives = 130/271 (47.97%), Query Frame = 0

Query: 3   EDSICKRCHKLAETTFHAIWACKHAQDSWRGSPFLHYGFPNHVTEVADLFCWFYGKLRSK 62
           +D  C  C    E T+HA+W CK+ Q+ W+ + +      +H  +  +L+C     LR++
Sbjct: 343 DDPSCPNCTASIEDTYHALWTCKNLQEVWQATEWGRKLQGSHYVDFMELYCALTRTLRTE 402

Query: 63  QMQKFMIMCWRNWNCRNME-----VNEVFK--PSDATDQKTFY--------LPAYDWDYL 122
           ++Q F +  W  W  RN +     + E+ +  P        F+         P       
Sbjct: 403 ELQIFAMASWSIWYRRNRQRLGQPIEEIHRLIPRSLELLMEFHQAQDDNSPKPEPTRPAC 462

Query: 123 LDKLKPLDAVNFKINVDAAINSEDRRSVLGMVMRNWKGEAMASYCCQIPGIIDSEIAKAM 182
           L K  P  A ++K N D AI +E   + +G+++RN +G  MAS   +IP     E  +A 
Sbjct: 463 LAKWNPPAAGSYKANFDGAIFTETSEAGIGVIIRNDQGAVMASLSQRIPYPHSVEAVEAF 522

Query: 183 AVRHGMDLAMDLGFQRIEMETDALHVVNLLNNEMHCRSKVGRLVEEIKSLARNFLFVSFG 242
           A R     A+DLG + +  E D+L ++  L +   C ++ G L+ + K++A++F+   F 
Sbjct: 523 AARSAAQFALDLGLRDVSFEGDSLKIITALQHHSPCNTQYGYLITDTKTIAQDFISCHFV 582

Query: 243 WCGRDANSIAHKLAKMRAFENEEQFWMEEVP 259
              R+ N +AH LA+        Q WME+VP
Sbjct: 583 HVKREGNRVAHSLAQRARQHEPFQVWMEDVP 613

BLAST of Sed0017704 vs. ExPASy TrEMBL
Match: A0A2N9F767 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14649 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.6e-27
Identity = 85/285 (29.82%), Postives = 130/285 (45.61%), Query Frame = 0

Query: 3    EDSICKRCHKLAETTFHAIWACKHAQDSWRGSPFLHYGFPNHVTEVADLFCWFYGKLRSK 62
            +D+ C+ C    ETT HA+W C   +  W   P+       +     DL  +      S 
Sbjct: 764  DDARCESCKLSVETTLHALWNCPSIELVWSSLPWRASIVGTNFLNFLDLIQFMIANRTSH 823

Query: 63   QMQKFMIMCWRNWNCRNME-VNEVFKPSDATDQKTFYL-------------PAYDWDYLL 122
            + + F ++CW  W  RN + +++  +P D    K   L             P        
Sbjct: 824  EFESFAMVCWSLWYHRNKKRLSQPTEPQDRLVAKAQELLAEYNSAHHSQMPPQPSSASSR 883

Query: 123  DKLKPLDAVNFKINVDAAINSEDRRSVLGMVMRNWKGEAMASYCCQIPGIIDSEIAKAMA 182
             + KP D    K+N D A+ +E   + +G+++RN  GE MA+ C +IP        +A A
Sbjct: 884  AEWKPPDLGRCKVNFDGAVFAEREEAGIGVIIRNSNGEPMAALCQRIPYPHSVNAVEASA 943

Query: 183  VRHGMDLAMDLGFQRIEMETDALHVVNLLNNEMHCRSKVGRLVEEIKSLARNFLFVSFGW 242
             R    LA+D+G   +E+E D+  +V+ L +   C +  G L+E+ K LA++  FVSF  
Sbjct: 944  ARAATQLAIDVGILDVEIEGDSAGIVSALLDPNPCLALFGHLIEDTKLLAQSLNFVSFKH 1003

Query: 243  CGRDANSIAHKLAKMRAFENEEQFWMEEVPEMCIRDYLCELVKDF 274
              RD NS+AH LAK        + W+E V      D L  L KDF
Sbjct: 1004 VKRDGNSVAHTLAKKAKSSKPLEIWLETVSP----DILPILCKDF 1044

BLAST of Sed0017704 vs. ExPASy TrEMBL
Match: A0A2N9I1D9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45731 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-26
Identity = 81/286 (28.32%), Postives = 122/286 (42.66%), Query Frame = 0

Query: 3   EDSICKRCHKLAETTFHAIWACKHAQDSWRGSPFLHYGFPNHVTEVADLFCWFYGKLRSK 62
           +D  C  C+   ET  HA+W C   ++ W   P+      NH     +LF   +  L   
Sbjct: 99  QDPSCGNCNYWNETVLHALWQCNTLEEIWNSVPWGRRLVHNHYLNFMELFHHCHLDLSPS 158

Query: 63  QMQKFMIMCWRNW---NCRNM------------EVNEVFKPSDATDQKTFYLPAYDWDYL 122
           ++Q F    W  W   NC+ +                +     A  +             
Sbjct: 159 ELQLFAFTTWSIWYRRNCQRLNQQPAPLNQLMPRAQHLLSEFQAAQESPSSTSGQSDPPT 218

Query: 123 LDKLKPLDAVNFKINVDAAINSEDRRSVLGMVMRNWKGEAMASYCCQIPGIIDSEIAKAM 182
               KP     +K N D A   +   + +G+++RN +G AMAS C +IP     E  +A 
Sbjct: 219 KVSWKPPQPGRYKANYDGAFFEDSNEAGIGVIIRNHRGAAMASLCQRIPFPHSVEAMEAY 278

Query: 183 AVRHGMDLAMDLGFQRIEMETDALHVVNLLNNEMHCRSKVGRLVEEIKSLARNFLFVSFG 242
           A R  ++L+ DLG + +++E D+  +VN L N   C +  G LV + K +A++ L V F 
Sbjct: 279 AARSAIELSNDLGLKEVDIEGDSQTIVNALCNPEPCNTLYGHLVNDTKLIAQDSLSVLFL 338

Query: 243 WCGRDANSIAHKLAKMRAFENEEQFWMEEVPEMCIRDYLCELVKDF 274
              RD N +AH LAK   F    + WME VP     D +  L  DF
Sbjct: 339 HVKRDGNVLAHSLAKRAKFSKPFEVWMESVPP----DLISILCNDF 380

BLAST of Sed0017704 vs. ExPASy TrEMBL
Match: A0A2N9J4C9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59073 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.5e-25
Identity = 86/292 (29.45%), Postives = 127/292 (43.49%), Query Frame = 0

Query: 4    DSICKRCHKLAETTFHAIWACKHAQDSWRGSPFLHYGFPNHVTEVADLFCWFYGKLRSKQ 63
            D  C+ C    ET  HA+W CK  +  W   P+      N      +LF   +  L + +
Sbjct: 1529 DPRCESCTDTNETVIHALWQCKSLEAVWSSVPWGRRLINNPYLNFMELFHHCHSVLSTLE 1588

Query: 64   MQKFMIMCWRNWNCRN--------MEVNEVFKPSD---ATDQKTFYLPA----------- 123
            +Q F I  W  W  RN        + ++++   +    +  Q    +PA           
Sbjct: 1589 LQLFAITTWAIWYRRNCLRLNQQPVAIHQLMPRAQQILSEFQAAQEIPASTSGPSDPPSP 1648

Query: 124  YDWDYLLDKLKPLDAVNFKINVDAAINSEDRRSVLGMVMRNWKGEAMASYCCQIPGIIDS 183
              W       +P     +K+N D A   E   + +G+V+RN  GE MAS C ++P     
Sbjct: 1649 ISW-------QPPHPGRYKVNYDGAFFEETNEAGIGVVIRNHMGEVMASLCQRVPFPHSV 1708

Query: 184  EIAKAMAVRHGMDLAMDLGFQRIEMETDALHVVNLLNNEMHCRSKVGRLVEEIKSLARNF 243
            E  +A A R  ++L+ DLGF+  +ME D+  VVN L N   C +  G LV + K +A+  
Sbjct: 1709 EAMEAYAARSAIELSRDLGFKEFDMEGDSKTVVNALCNPEPCNTLYGHLVNDTKRIAQAD 1768

Query: 244  LFVSFGWCGRDANSIAHKLAKMRAFENEEQFWMEEVPEMCIRDYLCELVKDF 274
            L V +    RD N +AH LAK        + WME VP     D +  L  DF
Sbjct: 1769 LSVLYLHTKRDGNVLAHSLAKRAKVSKSYEVWMESVPP----DLISILCNDF 1809

BLAST of Sed0017704 vs. TAIR 10
Match: AT3G23320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 5.9e-06
Identity = 36/134 (26.87%), Postives = 64/134 (47.76%), Query Frame = 0

Query: 109 DKLKPLDAVNFKINVDAAINSEDRRSVLGMVMRNWKGEAMASYCCQIPGIIDSEIAKAMA 168
           DK +   A   K N D + ++  + S L  ++RN +G  +   C +  G    + A+  A
Sbjct: 28  DKWQKPGAEWVKCNYDVSNHAGRQDSGLRWIIRNSQGTCLDCGCGKFQGRQTIKEAECTA 87

Query: 169 VRHGMDLAMDLGFQRIEMETDALHVVNLLNNEMHCRSKVGRLVEEIKSLARNFLFVSFGW 228
           +   +  A DLG++R+E E D + V  L+ N+     ++   +E I+  ++ F  V F +
Sbjct: 88  LIWAIQCAWDLGYRRVEFEGDNITVNRLIRNK-ETNPRLRYYLEFIQQWSKAFTTVKFTF 147

Query: 229 CGRDANSIAHKLAK 243
             R+ N     LAK
Sbjct: 148 RHREQNVCVDVLAK 160

BLAST of Sed0017704 vs. TAIR 10
Match: AT1G10000.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 1.1e-04
Identity = 60/258 (23.26%), Postives = 99/258 (38.37%), Query Frame = 0

Query: 7   CKRCHKLAETTFHAIWACKHAQDSWRGSPFL--HYGFPNHVTEVADLF--CWFYGKLRSK 66
           C RC    ET+ H ++ C  A   W  +P    H      + E  +L         +   
Sbjct: 33  CARC-GAPETSTHMLFHCDFAAQVWNLAPLQLGHIPIGTPILEALNLLKKTIVLPPVGIH 92

Query: 67  QMQKFMIMCWRNWNCRNMEV--NEVFKPSDATDQKTFYLPAYDWDYL-LDKLKPLD---- 126
               F  +CW  W  RN  +  N  F   +   +      A+    L L K++       
Sbjct: 93  TATLFPWICWHIWKARNQLIFQNSHFSVIETVTKAVQDALAWQSAQLALPKVRVATPRPN 152

Query: 127 -----AVNFKINVDAAINSEDRRSVLGMVMRNWKGE-----AMASYCCQIPGIIDSEIAK 186
                  +F   VDAA   +   +  G V +            ++ C + P  +    A+
Sbjct: 153 STTTLTHDFLCYVDAAWQQQSSLAGSGWVFQATSHSEKEITTFSAGCRRFPSPL---AAE 212

Query: 187 AMAVRHGMDLAMDLGFQRIEMETDALHVVNLLNNEMHCRSKVGRLVEEIKSLARNFLFVS 244
           A A++  M  A+ L    + + +D+  +V+ LN+ +      G LV EI+S+   F  +S
Sbjct: 213 AWAIKSAMLHALQLERSDLLVLSDSKSIVDALNSNVSLNEIFGLLV-EIRSIRNRFRSIS 272

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023904177.11.9e-3031.25uncharacterized protein LOC112015942 [Quercus suber][more]
XP_030931246.12.0e-2730.11uncharacterized protein LOC115957168 [Quercus lobata][more]
XP_023876296.14.4e-2731.97uncharacterized protein LOC111988743 [Quercus suber][more]
XP_023928118.19.8e-2731.34uncharacterized protein LOC112039474 [Quercus suber][more]
XP_030941688.12.2e-2628.52uncharacterized protein LOC115966628 [Quercus lobata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9ED812.5e-2830.77Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS466 PE=4 SV=1[more]
A0A2N9J0V87.3e-2828.41Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59068 PE=4 SV=1[more]
A0A2N9F7673.6e-2729.82Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14649 PE=4 SV=1[more]
A0A2N9I1D91.4e-2628.32Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45731 PE=4 SV=1[more]
A0A2N9J4C91.5e-2529.45Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59073 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G23320.15.9e-0626.87Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT1G10000.11.1e-0423.26Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 122..243
e-value: 1.9E-28
score: 98.8
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 117..245
e-value: 1.5E-17
score: 65.9
NoneNo IPR availablePANTHERPTHR47074:SF25SUBFAMILY NOT NAMEDcoord: 116..247
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 116..247
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 121..242
e-value: 3.82887E-24
score: 92.3772
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 120..242

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0017704.1Sed0017704.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity