Sed0017680 (gene) Chayote v1

Overview
NameSed0017680
Typegene
OrganismSechium edule (Chayote v1)
DescriptionAuxilin-like protein 1 isoform X4
LocationLG10: 7247862 .. 7248200 (+)
RNA-Seq ExpressionSed0017680
SyntenySed0017680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGAGCTTTGAGTACCAGGAGATGTCCTCACAGGTATGAGTATCTCATGGAGGATCCTACAGTTAGCCTGTTGGAAGGCCGGCTGAAGAGGACGACCAGTTTGCCAACCATAGTACTCGGGTCAGGATCGAGGAAACCGACATCTGCTGAGCTTGCTCAAGCAAAGCTGCAGTCAAAGAAAGCTAGTAAAGGGCATGGTATTTTTAGTTTCTTTGATATTCGTCGCAAGAGGAAGTCGACGGCCAAGCCTGAATTCGCAAGGTATCTAGAGTATGTGAAGGAGGGAGGGCTGTGGGATTTGAAAGCAAATGCTCCTGTAATCTACTATAAATGA

mRNA sequence

ATGTTGAGAGCTTTGAGTACCAGGAGATGTCCTCACAGGTATGAGTATCTCATGGAGGATCCTACAGTTAGCCTGTTGGAAGGCCGGCTGAAGAGGACGACCAGTTTGCCAACCATAGTACTCGGGTCAGGATCGAGGAAACCGACATCTGCTGAGCTTGCTCAAGCAAAGCTGCAGTCAAAGAAAGCTAGTAAAGGGCATGGTATTTTTAGTTTCTTTGATATTCGTCGCAAGAGGAAGTCGACGGCCAAGCCTGAATTCGCAAGGTATCTAGAGTATGTGAAGGAGGGAGGGCTGTGGGATTTGAAAGCAAATGCTCCTGTAATCTACTATAAATGA

Coding sequence (CDS)

ATGTTGAGAGCTTTGAGTACCAGGAGATGTCCTCACAGGTATGAGTATCTCATGGAGGATCCTACAGTTAGCCTGTTGGAAGGCCGGCTGAAGAGGACGACCAGTTTGCCAACCATAGTACTCGGGTCAGGATCGAGGAAACCGACATCTGCTGAGCTTGCTCAAGCAAAGCTGCAGTCAAAGAAAGCTAGTAAAGGGCATGGTATTTTTAGTTTCTTTGATATTCGTCGCAAGAGGAAGTCGACGGCCAAGCCTGAATTCGCAAGGTATCTAGAGTATGTGAAGGAGGGAGGGCTGTGGGATTTGAAAGCAAATGCTCCTGTAATCTACTATAAATGA

Protein sequence

MLRALSTRRCPHRYEYLMEDPTVSLLEGRLKRTTSLPTIVLGSGSRKPTSAELAQAKLQSKKASKGHGIFSFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK
Homology
BLAST of Sed0017680 vs. NCBI nr
Match: KAG6594817.1 (Auxilin-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-50
Identity = 104/113 (92.04%), Postives = 109/113 (96.46%), Query Frame = 0

Query: 1    MLRALSTRRCPHRYEYLMEDPTVSLLEGRLKRTTSLPTIVLGSGSRKPTSAELAQAKL-Q 60
            MLRALSTRRCPHRYEYLMEDPT+SL+EGRLKRTTS+PTIVLGSGSR PTSAE AQAKL Q
Sbjct: 1452 MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKLKQ 1511

Query: 61   SKKASKGHGIFSFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 113
            SKKASKGH +F+FFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK
Sbjct: 1512 SKKASKGHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 1564

BLAST of Sed0017680 vs. NCBI nr
Match: KAG7026782.1 (hypothetical protein SDJN02_10789, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-50
Identity = 104/113 (92.04%), Postives = 109/113 (96.46%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTVSLLEGRLKRTTSLPTIVLGSGSRKPTSAELAQAKL-Q 60
           MLRALSTRRCPHRYEYLMEDPT+SL+EGRLKRTTS+PTIVLGSGSR PTSAE AQAKL Q
Sbjct: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKLKQ 60

Query: 61  SKKASKGHGIFSFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 113
           SKKASKGH +F+FFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK
Sbjct: 61  SKKASKGHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 113

BLAST of Sed0017680 vs. NCBI nr
Match: XP_023003965.1 (uncharacterized protein LOC111497412 [Cucurbita maxima])

HSP 1 Score: 191.4 bits (485), Expect = 4.1e-45
Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTVSLLEGRLKRTTSLPTIVLGSGSRKPTSAELAQAKL-Q 60
           MLRALSTRRCPHRYEYLMEDPT+SL+EGRLKRT S+PTIVLGSGSR PTSA  AQAKL Q
Sbjct: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTASVPTIVLGSGSRNPTSAVPAQAKLKQ 60

Query: 61  SKKASKGHGIFSFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPV 109
           SKKASKGH +F+FFD  RKRKSTAKPEFARYLEYVKEGGLWDLKANAPV
Sbjct: 61  SKKASKGHALFNFFDFGRKRKSTAKPEFARYLEYVKEGGLWDLKANAPV 109

BLAST of Sed0017680 vs. NCBI nr
Match: XP_011658493.1 (uncharacterized protein LOC105436031 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 97/118 (82.20%), Postives = 103/118 (87.29%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTVSLLEGRLKRTTSLPTIVLGSGSRKP----TSAELAQA 60
           MLRALSTRRCPHRYE+  EDPT+SLLEGRLKR TSLPTIVLGSGSRKP    T  E AQA
Sbjct: 1   MLRALSTRRCPHRYEFFAEDPTLSLLEGRLKRATSLPTIVLGSGSRKPAFDITFPEFAQA 60

Query: 61  K-LQSKKASK-GHGIFSFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 113
           K  QSKKA+K GH IFSFFD RRKRKSTA+PEFARYLEY+KEGGLWDLKANAPVIY+K
Sbjct: 61  KQKQSKKANKGGHPIFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 118

BLAST of Sed0017680 vs. NCBI nr
Match: XP_038883128.1 (uncharacterized protein LOC120074173 [Benincasa hispida])

HSP 1 Score: 180.6 bits (457), Expect = 7.3e-42
Identity = 97/118 (82.20%), Postives = 103/118 (87.29%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTVSLLEGRLKRTTSLPTIVLGSGSRKPTS----AELAQA 60
           MLRALSTRRCPHRYE L EDPTVSLLEGRLKR TSLPT VLGSGSRKPTS     E AQA
Sbjct: 1   MLRALSTRRCPHRYERLGEDPTVSLLEGRLKRATSLPTRVLGSGSRKPTSEIIFPEFAQA 60

Query: 61  -KLQSKKASK-GHGIFSFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 113
            + QSKKA+K GH +FSFFD RRKRKSTA+PEFARYLEY+KEGGLWDLKANAPVIY+K
Sbjct: 61  NQKQSKKANKGGHPLFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 118

BLAST of Sed0017680 vs. ExPASy TrEMBL
Match: A0A6J1KT92 (uncharacterized protein LOC111497412 OS=Cucurbita maxima OX=3661 GN=LOC111497412 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.0e-45
Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTVSLLEGRLKRTTSLPTIVLGSGSRKPTSAELAQAKL-Q 60
           MLRALSTRRCPHRYEYLMEDPT+SL+EGRLKRT S+PTIVLGSGSR PTSA  AQAKL Q
Sbjct: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTASVPTIVLGSGSRNPTSAVPAQAKLKQ 60

Query: 61  SKKASKGHGIFSFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPV 109
           SKKASKGH +F+FFD  RKRKSTAKPEFARYLEYVKEGGLWDLKANAPV
Sbjct: 61  SKKASKGHALFNFFDFGRKRKSTAKPEFARYLEYVKEGGLWDLKANAPV 109

BLAST of Sed0017680 vs. ExPASy TrEMBL
Match: A0A0A0KKF4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502830 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.4e-43
Identity = 97/118 (82.20%), Postives = 103/118 (87.29%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTVSLLEGRLKRTTSLPTIVLGSGSRKP----TSAELAQA 60
           MLRALSTRRCPHRYE+  EDPT+SLLEGRLKR TSLPTIVLGSGSRKP    T  E AQA
Sbjct: 1   MLRALSTRRCPHRYEFFAEDPTLSLLEGRLKRATSLPTIVLGSGSRKPAFDITFPEFAQA 60

Query: 61  K-LQSKKASK-GHGIFSFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 113
           K  QSKKA+K GH IFSFFD RRKRKSTA+PEFARYLEY+KEGGLWDLKANAPVIY+K
Sbjct: 61  KQKQSKKANKGGHPIFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 118

BLAST of Sed0017680 vs. ExPASy TrEMBL
Match: A0A6J1BSU6 (uncharacterized protein LOC111005403 OS=Momordica charantia OX=3673 GN=LOC111005403 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.8e-42
Identity = 95/117 (81.20%), Postives = 99/117 (84.62%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTVSLLEGRLKRTTSLPTIVLGSGSRKP----TSAELAQA 60
           MLRALSTRRCPHRYE L EDPT+SLLEGRLKR TSLPT VLGS SRK       AE AQ 
Sbjct: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60

Query: 61  K-LQSKKASKGHGIFSFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 113
           K  QSKKAS+GH +FSFFD RRKRK+TAKPEFARYLEYVKEGGLWDLKANAPVIYYK
Sbjct: 61  KHRQSKKASRGHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 117

BLAST of Sed0017680 vs. ExPASy TrEMBL
Match: A0A1S3B2K9 (uncharacterized protein LOC103485064 OS=Cucumis melo OX=3656 GN=LOC103485064 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.0e-41
Identity = 93/118 (78.81%), Postives = 103/118 (87.29%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTVSLLEGRLKRTTSLPTIVLGSGSRKP----TSAELAQA 60
           MLRALSTRRCPHRY++L EDPT+SLLEG+L+R TSLPTIVLGSGSRK     T  E AQA
Sbjct: 1   MLRALSTRRCPHRYKFLAEDPTISLLEGKLRRATSLPTIVLGSGSRKSAFDITVPEFAQA 60

Query: 61  K-LQSKKASK-GHGIFSFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 113
           K  QSK+A+K GH IFSFFD RRKRKSTA+PEFARYLEY+KEGGLWDLKANAPVIY+K
Sbjct: 61  KQKQSKRANKGGHPIFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 118

BLAST of Sed0017680 vs. ExPASy TrEMBL
Match: A0A6J1ILF9 (uncharacterized protein LOC111478516 OS=Cucurbita maxima OX=3661 GN=LOC111478516 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTVSLLEGRLKRTTSLPTIVLGSGSRKPTSAELAQAK-LQ 60
           MLRALSTRRCPHRYE L EDPT+SLLE +LKR TSLPT VLGSGS KP S  +AQ K  Q
Sbjct: 1   MLRALSTRRCPHRYERLGEDPTISLLEVKLKRATSLPTRVLGSGSVKPISETIAQVKQKQ 60

Query: 61  SKKASK--GHGIFSFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 113
           SKK +   GH +FSFFD RRKRKSTAKPEFARY+EYVKEGGLWDLKANAPVIY+K
Sbjct: 61  SKKGNNKGGHPLFSFFDFRRKRKSTAKPEFARYVEYVKEGGLWDLKANAPVIYFK 115

BLAST of Sed0017680 vs. TAIR 10
Match: AT4G36500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18210.1); Has 50 Blast hits to 50 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 102.1 bits (253), Expect = 3.1e-22
Identity = 59/120 (49.17%), Postives = 79/120 (65.83%), Query Frame = 0

Query: 1   MLRALSTRRCPHR--YEYLMEDPTVSLLEGRLKRTTSL----PTIVLGSGSRKPTSAELA 60
           MLR+LSTR    R  YE + +D T SLL  +L+R+TS+    P+I LG+G       EL 
Sbjct: 3   MLRSLSTRTRSRRGGYERVSDDSTFSLLGAKLRRSTSVPYYAPSIKLGAGGVPTILEELP 62

Query: 61  QAKLQSKKASK--GHGIFSFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 113
           + K +  K +    H IFS F  ++K+ +T KPEF+RYLEY+KEGG+WD +ANAPVIYYK
Sbjct: 63  RQKSKKVKPTGKFSHPIFSLFYGKKKKSTTTKPEFSRYLEYLKEGGMWDARANAPVIYYK 122

BLAST of Sed0017680 vs. TAIR 10
Match: AT2G18210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G36500.1); Has 50 Blast hits to 50 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 6.0e-18
Identity = 58/126 (46.03%), Postives = 76/126 (60.32%), Query Frame = 0

Query: 1   MLRALSTRRCPHR--YEYLMEDPTVSLLEGRLKRTTSLPTIV--LGSGSRKPTSAELAQA 60
           MLR LSTR    R  YE + +D T SLL  +L+R+TS+P     +  G   P   E    
Sbjct: 3   MLRNLSTRTRSRRGGYERVSDDSTFSLLGAKLRRSTSVPYYAPSIRLGGDFPVILE---- 62

Query: 61  KLQSKKASK-------GHGIFSFFDIRR---KRKSTAKPEFARYLEYVKEGGLWDLKANA 113
           KL  +K +K        H IFS FD  R   K+K+TAKPEF+RY EY+KE G+WDL++N+
Sbjct: 63  KLPRQKPTKTVVTSKLSHPIFSLFDGYRRHNKKKATAKPEFSRYHEYLKESGMWDLRSNS 122

BLAST of Sed0017680 vs. TAIR 10
Match: AT3G50900.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66490.1); Has 45 Blast hits to 45 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 6.0e-18
Identity = 53/122 (43.44%), Postives = 71/122 (58.20%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTVSLLEGRLKRTTSLPTIVLGSGSRKPTSAELAQAKLQS 60
           M RA+STR+    YE L ++      E RLKR +S+P  V G  SR P   E+ +     
Sbjct: 1   MFRAMSTRKIHGGYEKLGDE------EARLKRVSSVPASVYGH-SRNPVQ-EVKKTPTAK 60

Query: 61  KKASKGHGIFSFFDIRRKRK----------STAKPEFARYLEYVKEGGLWDLKANAPVIY 113
                 H +FSFFD+  +RK          +TAKPEFARY+EYV+EGG+WD  +NAPVI+
Sbjct: 61  PTGGSVHPLFSFFDVHFQRKKKNTAKKKSLATAKPEFARYMEYVREGGVWDPSSNAPVIH 114

BLAST of Sed0017680 vs. TAIR 10
Match: AT5G66490.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 51/120 (42.50%), Postives = 65/120 (54.17%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYL--MEDPTVSLLEGRLKRTTSLPTIVLGSGSRKPTSAELAQAKL 60
           M+RALSTR+    Y+ L   E+    LLE    +  S+PT   G   +     E      
Sbjct: 1   MIRALSTRKVRGSYKKLGDEEEAGAGLLE---VKPESVPTNPHGQSPKVNKPVE------ 60

Query: 61  QSKKASKGHGIFSFFDIRRKRK------STAKPEFARYLEYVKEGGLWDLKANAPVIYYK 113
             K     H +FSFF++  KRK      +TAKPEFARYLEYVKEGG+WD  +N P IYY+
Sbjct: 61  --KTRGSAHPLFSFFEMSLKRKKKKKSTTTAKPEFARYLEYVKEGGVWDNTSNGPAIYYR 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6594817.12.5e-5092.04Auxilin-like protein 1, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7026782.12.5e-5092.04hypothetical protein SDJN02_10789, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023003965.14.1e-4588.07uncharacterized protein LOC111497412 [Cucurbita maxima][more]
XP_011658493.11.1e-4282.20uncharacterized protein LOC105436031 [Cucumis sativus][more]
XP_038883128.17.3e-4282.20uncharacterized protein LOC120074173 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KT922.0e-4588.07uncharacterized protein LOC111497412 OS=Cucurbita maxima OX=3661 GN=LOC111497412... [more]
A0A0A0KKF45.4e-4382.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502830 PE=4 SV=1[more]
A0A6J1BSU67.8e-4281.20uncharacterized protein LOC111005403 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A1S3B2K93.0e-4178.81uncharacterized protein LOC103485064 OS=Cucumis melo OX=3656 GN=LOC103485064 PE=... [more]
A0A6J1ILF91.6e-3978.26uncharacterized protein LOC111478516 OS=Cucurbita maxima OX=3661 GN=LOC111478516... [more]
Match NameE-valueIdentityDescription
AT4G36500.13.1e-2249.17unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G18210.16.0e-1846.03unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G50900.16.0e-1843.44unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G66490.11.1e-1442.50unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35291PROTEIN SHROOM-LIKEcoord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0017680.1Sed0017680.1mRNA