Sed0017658 (gene) Chayote v1

Overview
NameSed0017658
Typegene
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L27-like
LocationLG11: 10151926 .. 10154348 (+)
RNA-Seq ExpressionSed0017658
SyntenySed0017658
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCATTGCAATGCAGTGAAAATGAACTCATTAAATTTTCGTACAATAGGAATAGACGTTTTGAATTTATTGTTATTTTATTAAAAGGTAAACAAAAAAACCCTAACTTCTCTGCATAGCCGCCCTTTCTCAGTTTCTTCATCTCTTTCTCTCGACAAAATCTGTGTGTTCAAAGAACGAATGAAGTTCTTTGAAACCTATTTTCTCTGCTATTCATCTTCGACGACTCTTAGATAGTAAAAAAGGTATGATTTTTATTTTTTTTTAATTTTTGAATCGTTCCGATACGCAGGTGAATCGTTTCTTTTTCACTATGAAAACGTCCGATTCGGGCGATTTGCGATTCAAAATTACGATTTGAATCGATTTCTTCACGATTCGTTTTGAATCGCAAAACGCACGCTTTTGATAACCTTGATTCTAATAATAGTGTTGGTGAACAAACCAACTAGAATATTGTTGAAATATAGAAGATAGAAGAATTACATTATAACTTGTTTCTCGGACTCTCCATCTTTTCCCGAACAATTGTCTATATATATGTGTATATGTATATGTATTCTTGCAAGTGCTTGGTTTAAACATTTGAATGAAGATCTTTGAGGGTATACTCCCCTTGAGGTCCTGACCTGTGACATTACTACTTCGGTGTCTCTGATGCCTGGCTTAGGGACAGGATTACCCTTGTTTCCAAAATAAAAAAAATTTGAATGAAGATATTTTTTTATCTCTTCCATTTTGGTTAGTAATTGATAAGGAAGACAACCTTCCAATGATCTCTACATTGGTATGATATTCTACTTTGGGTATAAGCCCCTTATGGGTTTGCTTTGGGTCTCAACCAAAAGACCTCATGCCAATAGAGATGGCTGTCCTCATTTAGCCCTTATCTATAACTAATGTGGGACAACATTGTTTGTAATCCAACCATCTTCTCCTCGAACAAAGTATAATGAGCCTCTCCTTCGGCTTGTCTTATGTGTTCGGCACTTGAGGATTTAATCCTTCCTTGAACAATCTTCCCAATAGAGATGGTTGTTCTCACTCTTATTCTCATGATCTTCACTTTATCTAACTAATGTGGGATAAGTTTGTTTGTATCTAACAACAATATCTATGCTTGTCTCTTGAATTCATCCTGTTACCTGTGAAGGATTTAAAAGATGCAATCTTGTTTTGTTTTCTAAGATAATAAACTGTTGTTCTATAATTAGAACATGCTCATTTGAGCTGGTTGAACCTGATTATGCTATTTATATAGTAGACATTATTGGAATTGTCTCATTTGTTCTTGTTGAACTAGAGTATGTTTTACATGTCCCAAGTGTCTTTCAACGTATTTTTCAGGATAGGCTACATCAAATACAATCATGCTTAATATTGCAACCACATTTTGCAAGCGATTGAATGTCAAGGATTTGGTTACCAATGTTCCTGTATATAGCAGTTTTAGTGGTAAGGATGGTTCATCTAGATCAAGTTGTGCTTGTCATGCTATTTTGTCCTCATATTTTATGGTTATAATGGTTGTTTAAGTGAATCTCAGATGGAGCTGCTGCGGGGTTAAACTTATTATTTAGACGTTGGGCTACAAAAAAGACAGCTGGGTCAACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTAAAGAAATTTGGTGGGGAGGTGAGTGCAAGAAAGAAAAAAATTTAATCACATTGTCATAAACTAGAACATAAATTTCTATTGATTGAAACTGTTTTGTTATAAATGACATGTTCTTCTGGATTCAGAGAGTTATTCCAGGTAACATTATCGTTCGACAGCGGGGCACCCGTTTCCATCCTGGAGATTATGTCGGAATAGGGAAGGATCACACGCTTTTTGCACTGAAAGAAGGCAGTGTCAAGTTTGAAAAGCACAAGCTAAGCGGACGAAAGTGGGTCCACATTATACCAAAGGAAGGACATGTTCTTCACCCTGTTTATGCAGTTACTACTACTACTCCAGAGTTGAAGACATTGGCATGATATCAAACTCTCTTTCTTTATTGTGGTGTTTTTATTTGTTGAAGAAAATGATGATGAATGGTAGAAATTTTTTCCTAGTTTTTCATGGCCCATAGAAAATTTGGACTAAACTCGATCACTTTGTGGGGGCACAAAGCTGTGTGCAGATAAAGATGATTTAGCAGGTCGATGCACTTGACGAAAAAGAAATCTCACAGAATTATCGTTGTACTAAGCGTCCGTGGTGAATAAAAGGTACCTTTGAATTCTAAGTCCTCTTTCAACCTTTTACCCTCCCTGGAAATTTTTATTTAGGGATATTTTCTGAATTGACATACCAGATATGTAATTGTCTGAGAATGTGCATTAGACAGCAGTTGTGTTGTGGTCGTTGTTAAAATTAGCTTTGAAGTTTTTTGTGCTTGTTTAA

mRNA sequence

CTCATTGCAATGCAGTGAAAATGAACTCATTAAATTTTCGTACAATAGGAATAGACGTTTTGAATTTATTGTTATTTTATTAAAAGGTAAACAAAAAAACCCTAACTTCTCTGCATAGCCGCCCTTTCTCAGTTTCTTCATCTCTTTCTCTCGACAAAATCTGTGTGTTCAAAGAACGAATGAAGTTCTTTGAAACCTATTTTCTCTGCTATTCATCTTCGACGACTCTTAGATAGTAAAAAAGGATAGGCTACATCAAATACAATCATGCTTAATATTGCAACCACATTTTGCAAGCGATTGAATGTCAAGGATTTGGTTACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGCGGGGTTAAACTTATTATTTAGACGTTGGGCTACAAAAAAGACAGCTGGGTCAACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCAGGTAACATTATCGTTCGACAGCGGGGCACCCGTTTCCATCCTGGAGATTATGTCGGAATAGGGAAGGATCACACGCTTTTTGCACTGAAAGAAGGCAGTGTCAAGTTTGAAAAGCACAAGCTAAGCGGACGAAAGTGGGTCCACATTATACCAAAGGAAGGACATGTTCTTCACCCTGTTTATGCAGTTACTACTACTACTCCAGAGTTGAAGACATTGGCATGATATCAAACTCTCTTTCTTTATTGTGGTGTTTTTATTTGTTGAAGAAAATGATGATGAATGGTAGAAATTTTTTCCTAGTTTTTCATGGCCCATAGAAAATTTGGACTAAACTCGATCACTTTGTGGGGGCACAAAGCTGTGTGCAGATAAAGATGATTTAGCAGGTCGATGCACTTGACGAAAAAGAAATCTCACAGAATTATCGTTGTACTAAGCGTCCGTGGTGAATAAAAGGTACCTTTGAATTCTAAGTCCTCTTTCAACCTTTTACCCTCCCTGGAAATTTTTATTTAGGGATATTTTCTGAATTGACATACCAGATATGTAATTGTCTGAGAATGTGCATTAGACAGCAGTTGTGTTGTGGTCGTTGTTAAAATTAGCTTTGAAGTTTTTTGTGCTTGTTTAA

Coding sequence (CDS)

ATGCTTAATATTGCAACCACATTTTGCAAGCGATTGAATGTCAAGGATTTGGTTACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGCGGGGTTAAACTTATTATTTAGACGTTGGGCTACAAAAAAGACAGCTGGGTCAACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCAGGTAACATTATCGTTCGACAGCGGGGCACCCGTTTCCATCCTGGAGATTATGTCGGAATAGGGAAGGATCACACGCTTTTTGCACTGAAAGAAGGCAGTGTCAAGTTTGAAAAGCACAAGCTAAGCGGACGAAAGTGGGTCCACATTATACCAAAGGAAGGACATGTTCTTCACCCTGTTTATGCAGTTACTACTACTACTCCAGAGTTGAAGACATTGGCATGA

Protein sequence

MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRKWVHIIPKEGHVLHPVYAVTTTTPELKTLA
Homology
[Close]
BLAST of Sed0017658 vs. NCBI nr
Match: XP_016901663.1 (PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribosomal protein L27-like [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.3e-75
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGA AGLNLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG+VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYAVTTTTPELKTLA 149
           VH+IPK+GHVLHPVYA T+T+P+LKT A
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 148

[Close]
BLAST of Sed0017658 vs. NCBI nr
Match: XP_022970580.1 (uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharacterized protein LOC111469515 [Cucurbita maxima])

HSP 1 Score: 288.1 bits (736), Expect = 4.3e-74
Identity = 139/148 (93.92%), Postives = 142/148 (95.95%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDG+A GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYAVTTTTPELKTLA 149
           VHIIPKEGHVLHPVYA T  +PELKT A
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAA 148

[Close]
BLAST of Sed0017658 vs. NCBI nr
Match: XP_022964702.1 (uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964704.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_023520403.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >XP_023520404.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >KAG7019178.1 rpmA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284.6 bits (727), Expect = 4.7e-73
Identity = 137/146 (93.84%), Postives = 140/146 (95.89%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DG+A GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYAVTTTTPELKT 147
           VHIIPKEGHVLHPVYA T  +PELKT
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKT 146

[Close]
BLAST of Sed0017658 vs. NCBI nr
Match: KAG6583414.1 (hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.9 bits (725), Expect = 8.1e-73
Identity = 137/146 (93.84%), Postives = 140/146 (95.89%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DG+A GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYAVTTTTPELKT 147
           VHIIPKEGHVLHPVYA T  +PELKT
Sbjct: 121 VHIIPKEGHVLHPVYASTDISPELKT 146

[Close]
BLAST of Sed0017658 vs. NCBI nr
Match: XP_038877023.1 (50S ribosomal protein L27-like [Benincasa hispida])

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 134/146 (91.78%), Postives = 140/146 (95.89%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVT VPVYSSFSDGAA GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRKW 120
           NLGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTLFALKEG V FEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYAVTTTTPELKT 147
           VH+IPKEGHVLHP+YA T+T+PELKT
Sbjct: 121 VHVIPKEGHVLHPIYATTSTSPELKT 146

[Close]
BLAST of Sed0017658 vs. ExPASy Swiss-Prot
Match: A9IM57 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-25
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGSVKFEKHKLSGRKWVHIIP 126
           L EG V F++ K   R +V +IP
Sbjct: 62  LSEGKVSFQR-KAGNRSYVSVIP 83

[Close]
BLAST of Sed0017658 vs. ExPASy Swiss-Prot
Match: Q6G507 (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=rpmA PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.9e-25
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGSVKFEKHKLSGRKWVHIIP 126
           L +G V F++ K + R +V +IP
Sbjct: 62  LSKGMVSFQR-KANNRSYVSVIP 83

[Close]
BLAST of Sed0017658 vs. ExPASy Swiss-Prot
Match: B4RZH4 (50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.0e-25
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH GD +GIGKDHTLFA
Sbjct: 2   AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTRFHAGDNMGIGKDHTLFA 61

Query: 103 LKEGSVKFEKHKLSGRKWVHII 125
           LK+G V+F+      RK+V I+
Sbjct: 62  LKDGKVQFDVKGPKNRKFVSIV 83

[Close]
BLAST of Sed0017658 vs. ExPASy Swiss-Prot
Match: Q47VL3 (50S ribosomal protein L27 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) OX=167879 GN=rpmA PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-24
Identity = 56/82 (68.29%), Postives = 64/82 (78.05%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK AGST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH G  +GIGKDHTLFA
Sbjct: 2   AHKKAAGSTRNGRDSEAKRLGVKRFGGESVLAGNIIVRQRGTRFHAGSNMGIGKDHTLFA 61

Query: 103 LKEGSVKFEKHKLSGRKWVHII 125
           L +G V+FE      RK+V II
Sbjct: 62  LSDGKVQFEVKGPKSRKFVSII 83

[Close]
BLAST of Sed0017658 vs. ExPASy Swiss-Prot
Match: Q2GCN3 (50S ribosomal protein L27 OS=Neorickettsia sennetsu (strain ATCC VR-367 / Miyayama) OX=222891 GN=rpmA PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-24
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           ATKK  GS+ NGRDS  K LGVKKFG ERVIPG+IIVRQRGT+FHPG  VG+G DHT+FA
Sbjct: 2   ATKKAGGSSSNGRDSIGKRLGVKKFGSERVIPGDIIVRQRGTKFHPGRNVGMGSDHTIFA 61

Query: 103 LKEGSVKFEKHKLSGRKWVHII 125
           +K GSV F    L GR++VH++
Sbjct: 62  MKSGSVSFSV-GLRGRRFVHVV 82

[Close]
BLAST of Sed0017658 vs. ExPASy TrEMBL
Match: A0A5A7TXR2 (50S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00530 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGA AGLNLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG+VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYAVTTTTPELKTLA 149
           VH+IPK+GHVLHPVYA T+T+P+LKT A
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 148

[Close]
BLAST of Sed0017658 vs. ExPASy TrEMBL
Match: A0A1S4E0A6 (50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGA AGLNLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG+VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYAVTTTTPELKTLA 149
           VH+IPK+GHVLHPVYA T+T+P+LKT A
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 148

[Close]
BLAST of Sed0017658 vs. ExPASy TrEMBL
Match: A0A6J1I390 (uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.1e-74
Identity = 139/148 (93.92%), Postives = 142/148 (95.95%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDG+A GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYAVTTTTPELKTLA 149
           VHIIPKEGHVLHPVYA T  +PELKT A
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAA 148

[Close]
BLAST of Sed0017658 vs. ExPASy TrEMBL
Match: A0A6J1HP14 (uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC111464705 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 137/146 (93.84%), Postives = 140/146 (95.89%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DG+A GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYAVTTTTPELKT 147
           VHIIPKEGHVLHPVYA T  +PELKT
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKT 146

[Close]
BLAST of Sed0017658 vs. ExPASy TrEMBL
Match: A0A0A0LIQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G023860 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.6e-72
Identity = 135/148 (91.22%), Postives = 141/148 (95.27%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGA AGLNLLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG+VKFEK+KLSGRKW
Sbjct: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYAVTTTTPELKTLA 149
           VH+IPKEGHVLHPVY  T+T+ +LKT A
Sbjct: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 148

[Close]
BLAST of Sed0017658 vs. TAIR 10
Match: AT5G15220.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-57
Identity = 104/149 (69.80%), Postives = 126/149 (84.56%), Query Frame = 0 

Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GL+L+F+RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYSGSSISDGSSSGLSLVFKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIIPKEGHVLHPVY--AVTTTTPELKT 147
           W+H+ P  GHVLHP+Y  A    + +LKT
Sbjct: 124 WIHVDPTGGHVLHPIYTKAAAAQSTKLKT 152

[Close]
BLAST of Sed0017658 vs. TAIR 10
Match: AT2G16930.2 (Ribosomal protein L27 family protein )

HSP 1 Score: 215.7 bits (548), Expect = 2.5e-56
Identity = 100/146 (68.49%), Postives = 120/146 (82.19%), Query Frame = 0 

Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GL+L+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIIPKEGHVLHPVYAVTTTTPELK 146
           W+H+ P  GHVLHP+Y         K
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTK 149

[Close]
BLAST of Sed0017658 vs. TAIR 10
Match: AT2G16930.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 215.7 bits (548), Expect = 2.5e-56
Identity = 100/146 (68.49%), Postives = 120/146 (82.19%), Query Frame = 0 

Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GL+L+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIIPKEGHVLHPVYAVTTTTPELK 146
           W+H+ P  GHVLHP+Y         K
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTK 149

[Close]
BLAST of Sed0017658 vs. TAIR 10
Match: AT2G16930.3 (Ribosomal protein L27 family protein )

HSP 1 Score: 215.7 bits (548), Expect = 2.5e-56
Identity = 100/146 (68.49%), Postives = 120/146 (82.19%), Query Frame = 0 

Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAAGLNLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GL+L+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGSVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIIPKEGHVLHPVYAVTTTTPELK 146
           W+H+ P  GHVLHP+Y         K
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTK 149

[Close]
BLAST of Sed0017658 vs. TAIR 10
Match: AT5G40950.1 (ribosomal protein large subunit 27 )

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-20
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118

Query: 103 LKEGSVKFEKHKLSGRKWVHIIPKE 128
           L +G VKFEK     RK + + P+E
Sbjct: 119 LIDGLVKFEKFG-PDRKKISVYPRE 142

The following BLAST results are available for this feature:
BLAST of Sed0017658 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016901663.12.3e-7593.92PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribos... [more]
XP_022970580.14.3e-7493.92uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharac... [more]
XP_022964702.14.7e-7393.84uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 unchar... [more]
KAG6583414.18.1e-7393.84hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038877023.11.4e-7291.7850S ribosomal protein L27-like [Benincasa hispida][more]
BLAST of Sed0017658 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A9IM571.0e-2569.8850S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)... [more]
Q6G5072.9e-2568.6750S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 ... [more]
B4RZH45.0e-2568.2950S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 11... [more]
Q47VL32.5e-2468.2950S ribosomal protein L27 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-68... [more]
Q2GCN32.5e-2467.0750S ribosomal protein L27 OS=Neorickettsia sennetsu (strain ATCC VR-367 / Miyaya... [more]
BLAST of Sed0017658 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TXR21.1e-7593.9250S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A1S4E0A61.1e-7593.9250S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1[more]
A0A6J1I3902.1e-7493.92uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515... [more]
A0A6J1HP142.3e-7393.84uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC1114647... [more]
A0A0A0LIQ35.6e-7291.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G023860 PE=3 SV=1[more]
BLAST of Sed0017658 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G15220.11.3e-5769.80Ribosomal protein L27 family protein [more]
AT2G16930.22.5e-5668.49Ribosomal protein L27 family protein [more]
AT2G16930.12.5e-5668.49Ribosomal protein L27 family protein [more]
AT2G16930.32.5e-5668.49Ribosomal protein L27 family protein [more]
AT5G40950.11.7e-2060.00ribosomal protein large subunit 27 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001684Ribosomal protein L27PRINTSPR00063RIBOSOMALL27coord: 95..119
score: 47.08
coord: 45..69
score: 63.85
coord: 70..94
score: 57.38
IPR001684Ribosomal protein L27PFAMPF01016Ribosomal_L27coord: 43..122
e-value: 4.0E-37
score: 126.1
IPR001684Ribosomal protein L27TIGRFAMTIGR00062TIGR00062coord: 43..123
e-value: 4.7E-35
score: 117.5
IPR001684Ribosomal protein L27PANTHERPTHR15893RIBOSOMAL PROTEIN L27coord: 2..147
IPR001684Ribosomal protein L27HAMAPMF_00539Ribosomal_L27coord: 42..126
score: 25.974096
NoneNo IPR availableGENE3D2.40.50.100coord: 47..143
e-value: 1.9E-32
score: 113.6
NoneNo IPR availablePANTHERPTHR15893:SF950S RIBOSOMAL PROTEIN L27-LIKEcoord: 2..147
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 43..123
IPR018261Ribosomal protein L27, conserved sitePROSITEPS00831RIBOSOMAL_L27coord: 75..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0017658.1Sed0017658.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome