Sed0017590 (gene) Chayote v1

Overview


Name	Sed0017590
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Integrase catalytic domain-containing protein
Location	LG10: 9012560 .. 9014252 (-)
RNA-Seq Expression	Sed0017590
Synteny	Sed0017590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGATCTTGGTATCAGAGCACCATGGTTGATCCATCAGTGGAAAAAGATTAAGAGACCTCCCAAAATAAAGCAGCTGAGGAACTGCGCAAAAACACAGATGCTCAACGAACGGCTGAAATAGGAAAGGCGATAGTAGTAGAAGTTGATCCACGAGTTATGAGCTCACGAGTAACAGAGGCTGAGAAGGTAAGGATTCTGGTAAAACACAACAACATCCCGATTAGGTATCTATTTTTTCCAACCTCATAAATCAAACCACTTCCATCAAACTTAGCAGAACCAATTTTATGTTGTGGAAAAGCATTGTGATACCTAGGCTCAAAAGTCACAAGATTTATGGGCATTTTGATGGGTACACCTTGCCCAGATGAAATAGTGATAATACCACCATCAGAAGATGATCCTGAAGGGATGATTTTCACAAATCCTGAACATGATGTATGGATTACTACTGACCAATTTCTTGTAGGATGGTTGTACAACTCAATGACACCAACATGGTTGCACAAGTAATGGGCTATGACACTGCTAAGGCTCTTTGGCAAGCAATTGAAAACTGCTATAGGATTTATTCTCGTTCCCAAGAAGACTATAACTGACAAATGTTGCAACAAACTTGCAAAGGATCCATGAAAATGGATGAATATCTGACAAAGATGAAGGGGTACAATGACAACTTGGCTTTTGCTGGACATCCAGTTGACAACAAAACTTTAATATCCTACATTTTGGCTAGACTAGATGAAGAATACAATCCAATTGTTTGTATCCTTCGAAATCTAGAAATGACCTGGGAGACTTGTCAATATGAGCTAAGGCAAGACAAATTGGAAACACTCAAAGGTAATCTTTCTGTGAACCAAGCATCTGTTAATTTTGTTTCAACTAACAAGTTTAAGTCTACCCCGAGCAACTCTTCAAATACCAAAGGAGGGCAATGTAGCTAGGGAGGCAAAAACAACTATGGTGGCTCTAAAAATCAGACTTATCAAGCTAGTCCCAAGAATGTTCCACCTCAAGGGTATTCAAATCAGAAGGGGAGAGGGGGCAAATGGAGACGACAAGAACGTTATGCTCCCTACACAACAGAAAGGTGTCAAATTTGTAGGAAAATTGGCTATCTAGCATCAATATGCTATTTCCGTTATACTCCTCCAACCAACAATCCTCCAAAACAAGCTGCTCAACCTGCTCCCCTTGTCCTTGCTGCTACTACTTTAATGGCTTACCATGAGACTCTGCAAGATGAAGGGTGGTAGTATCTTGATAGTGGGGCCACACACCATGTTACTGCTGATATGGGACGAATGAATCTTCAAGGTGAATCCCCAGGTATGAAAACGATTGTAGTTGAAGATGGCTCAAAAGTCCCTATACTTGGTTTTAGTACTATTTTTCTTAAGACAACATACATGACTTTGATCCTAAAGGATGTTCTTTATGTGCCTAAAATGAGAAAAAACCTTATTAACTTGTCAAAACTGACTAGAGATAATGTTATTACTATGGAGTTTAATGTTATGTCTTGTATTGTTAAGGCCACTCAAACCAAGGAAATCAAGGTCATAGGGAGACTTGAGGAAGGGATGTACTGGGTGATTCATTTTAGAGAAGTTGCTGGAAGACTTCCTAAGCCTACAAATGGAGTATATTTTGAAGAAACAGAATTAAGCTTGAAGGAAAGTGTGCCA

mRNA sequence

TCTGATCTTGGTATCAGAGCACCATGGTTGATCCATCAGTGGAAAAAGATTAAGAGACCTCCCAAAATAAAGCAGCTGAGGAACTGCGCAAAAACACAGATGCTCAACGAACGGCTGAAATAGGAAAGGCGATAGTAGTAGAAGTTGATCCACGAGTTATGAGCTCACGAGTAACAGAGGCTGAGAAGGATGGTTGTACAACTCAATGACACCAACATGGTTGCACAAGTAATGGGCTATGACACTGCTAAGGCTCTTTGGCAAGCAATTGAAAACTGCTATAGGATTTATTCTCGTTCCCAAGAAGACTATAACTGACAAATGTTGCAACAAACTTGCAAAGGATCCATGAAAATGGATGAATATCTGACAAAGATGAAGGGGTACAATGACAACTTGGCTTTTGCTGGACATCCAGTTGACAACAAAACTTTAATATCCTACATTTTGGCTAGACTAGATGAAGAATACAATCCAATTGTTTGTATCCTTCGAAATCTAGAAATGACCTGGGAGACTTGTCAATATGAGCTAAGGCAAGACAAATTGGAAACACTCAAAGGTAATCTTTCTGTGAACCAAGCATCTGTTAATTTTGTTTCAACTAACAAGTTTAAGTCTACCCCGAGCAACTCTTCAAATACCAAAGGAGGGCAATGTAGCTAGGGAGGCAAAAACAACTATGGTGGCTCTAAAAATCAGACTTATCAAGCTAGTCCCAAGAATGTTCCACCTCAAGGGTATTCAAATCAGAAGGGGAGAGGGGGCAAATGGAGACGACAAGAACGTTATGCTCCCTACACAACAGAAAGGTGTCAAATTTGTAGGAAAATTGGCTATCTAGCATCAATATGCTATTTCCGTTATACTCCTCCAACCAACAATCCTCCAAAACAAGCTGCTCAACCTGCTCCCCTTGTCCTTGCTGCTACTACTTTAATGGCTTACCATGAGACTCTGCAAGATGAAGGGTGGTAGTATCTTGATAGTGGGGCCACACACCATGTTACTGCTGATATGGGACGAATGAATCTTCAAGGTGAATCCCCAGGCCACTCAAACCAAGGAAATCAAGGTCATAGGGAGACTTGAGGAAGGGATGTACTGGGTGATTCATTTTAGAGAAGTTGCTGGAAGACTTCCTAAGCCTACAAATGGAGTATATTTTGAAGAAACAGAATTAAGCTTGAAGGAAAGTGTGCCA

Coding sequence (CDS)

ATGTTGCAACAAACTTGCAAAGGATCCATGAAAATGGATGAATATCTGACAAAGATGAAGGGGTACAATGACAACTTGGCTTTTGCTGGACATCCAGTTGACAACAAAACTTTAATATCCTACATTTTGGCTAGACTAGATGAAGAATACAATCCAATTGTTTGTATCCTTCGAAATCTAGAAATGACCTGGGAGACTTGTCAATATGAGCTAAGGCAAGACAAATTGGAAACACTCAAAGGTAATCTTTCTGTGAACCAAGCATCTGTTAATTTTGTTTCAACTAACAAGTTTAAGTCTACCCCGAGCAACTCTTCAAATACCAAAGGAGGGCAATGTAGCTAG

Protein sequence

MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRNLEMTWETCQYELRQDKLETLKGNLSVNQASVNFVSTNKFKSTPSNSSNTKGGQCS

Homology

[Close]

BLAST of Sed0017590 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 52/121 (42.98%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 1   MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILR-- 60
           + QQTCKGS++M EYL  MK + DNLA AG  V  + L+S +L  LDEEYNPIV  ++  
Sbjct: 157 VFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVRDLVSQVLTGLDEEYNPIVVAVQGK 216

Query: 61  -NL---EMTWETCQYELRQDKLETLKGNLSVNQA---SVNFVSTNKFKST--PSNSSNTK 111
            NL   EM  E   YE R +   +LK  + +NQ    SVN+V    F++    +N +N+ 
Sbjct: 217 VNLSWSEMHAELLTYEKRLEYQNSLKSGIPINQTQTPSVNYVDGRSFQTNQRTNNGNNSH 276

[Close]

BLAST of Sed0017590 vs. NCBI nr
Match: KZV34405.1 (hypothetical protein F511_34028, partial [Dorcoceras hygrometricum])

HSP 1 Score: 74.7 bits (182), Expect = 5.7e-10
Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 0


Query: 2   LQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRN-L 61
           LQ+T KG MKM+EYLT MK   DNLA AG+P+    LI  IL+ LD EY PIV +L + +
Sbjct: 105 LQKTKKGGMKMEEYLTTMKAIADNLAMAGNPIPLPDLIVQILSGLDAEYTPIVTLLTDKI 164

Query: 62  EMTWETCQ-----YELRQDKLETLK-GNLSVNQASVNFVSTNKFKSTPSNSSNTKG 111
            ++W   Q     YE R ++L T +   +  N AS +F +T+   + P  S+N +G
Sbjct: 165 SVSWIELQTNLLTYESRLEQLHTYQTDGIQANHASAHF-ATSSTTNRPFTSTNGRG 219

[Close]

BLAST of Sed0017590 vs. NCBI nr
Match: XP_038875081.1 (uncharacterized protein LOC120067610 [Benincasa hispida])

HSP 1 Score: 74.7 bits (182), Expect = 5.7e-10
Identity = 54/134 (40.30%), Postives = 73/134 (54.48%), Query Frame = 0


Query: 1   MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRNL 60
           M QQT K ++KM EYLT  K Y DNLAFAG P+    LIS +L+ LDEEYNP+V  +++ 
Sbjct: 31  MFQQTRKATLKMSEYLTLTKKYADNLAFAGPPMSPPDLISQVLSGLDEEYNPVVVAVKSK 90

Query: 61  EMT-WETCQ-----YELRQDKLETLKGN--------LSVNQASVNFVS------TNKFKS 113
             T W   Q     YE R +    +K N        +S N  SVN V       +N +++
Sbjct: 91  GTTRWSDLQSDLLSYEKRLEYQLAIKTNITGMTNVSISSNSPSVNVVQNSPSTLSNPYRN 150

[Close]

BLAST of Sed0017590 vs. NCBI nr
Match: XP_038902487.1 (uncharacterized protein LOC120089143 [Benincasa hispida])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 1   MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILR-N 60
           + QQTCKG+MKM EYL  MK ++DNL   G PV  + L+S +L  LDEE+NP V  ++  
Sbjct: 190 VFQQTCKGAMKMPEYLRVMKTHSDNLGLTGSPVPTRALVSQVLLGLDEEFNPFVATIQGR 249

Query: 61  LEMTWETCQYEL 72
            E++W   Q EL
Sbjct: 250 SEISWTNMQTEL 261

[Close]

BLAST of Sed0017590 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-09
Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = 0


Query: 1   MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILR-N 60
           + Q T KG++KM+EYL  MK   DNL  AG P+  +TL+S +L  LDEEYN IV +++  
Sbjct: 103 VFQTTRKGNLKMEEYLQTMKMNTDNLEQAGSPMPPRTLVSQVLLGLDEEYNAIVAMIQGR 162

Query: 61  LEMTWETCQYEL--------RQDKLETLKGNLSVNQASVNFVST---NKFKSTPSNSSNT 113
           ++M+W   Q EL         Q   +T  G   ++ ASVN  +T   N+   T S++ + 
Sbjct: 163 VDMSWLDMQSELLLYERRLEHQSNQKTTVGFNQISNASVNMTNTRHVNQNNKTNSSNQSI 222

[Close]

BLAST of Sed0017590 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.6e-12
Identity = 52/121 (42.98%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 1   MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILR-- 60
           + QQTCKGS++M EYL  MK + DNLA AG  V  + L+S +L  LDEEYNPIV  ++  
Sbjct: 157 VFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVRDLVSQVLTGLDEEYNPIVVAVQGK 216

Query: 61  -NL---EMTWETCQYELRQDKLETLKGNLSVNQA---SVNFVSTNKFKST--PSNSSNTK 111
            NL   EM  E   YE R +   +LK  + +NQ    SVN+V    F++    +N +N+ 
Sbjct: 217 VNLSWSEMHAELLTYEKRLEYQNSLKSGIPINQTQTPSVNYVDGRSFQTNQRTNNGNNSH 276

[Close]

BLAST of Sed0017590 vs. ExPASy TrEMBL
Match: A0A2Z7BJW9 (Uncharacterized protein (Fragment) OS=Dorcoceras hygrometricum OX=472368 GN=F511_34028 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-10
Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 0


Query: 2   LQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRN-L 61
           LQ+T KG MKM+EYLT MK   DNLA AG+P+    LI  IL+ LD EY PIV +L + +
Sbjct: 105 LQKTKKGGMKMEEYLTTMKAIADNLAMAGNPIPLPDLIVQILSGLDAEYTPIVTLLTDKI 164

Query: 62  EMTWETCQ-----YELRQDKLETLK-GNLSVNQASVNFVSTNKFKSTPSNSSNTKG 111
            ++W   Q     YE R ++L T +   +  N AS +F +T+   + P  S+N +G
Sbjct: 165 SVSWIELQTNLLTYESRLEQLHTYQTDGIQANHASAHF-ATSSTTNRPFTSTNGRG 219

[Close]

BLAST of Sed0017590 vs. ExPASy TrEMBL
Match: A0A5C7GU53 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027156 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 3   QQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLD-EEYNPIVCILRNLE 62
           Q+  KG MKM +YL   K   DNLA AG PV  K L+S IL  LD  EYNP+VC +   E
Sbjct: 175 QELKKGGMKMSDYLKMAKRLTDNLALAGRPVPLKDLVSQILNGLDSHEYNPLVCQINEKE 234

Query: 63  -MTWETCQ-----YELRQDKLETLKGNLSVNQASVNFVST 96
            ++W   Q     YE R +++     ++++ QA+ NFV T
Sbjct: 235 DISWIDLQAKLLSYEKRLEQMNAGIASINLGQAAANFVGT 274

[Close]

BLAST of Sed0017590 vs. ExPASy TrEMBL
Match: A0A2Z6P4D5 (Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_412550 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 5   TCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRN-LEMT 64
           T KG MKM+EYL KMK  +D L  AG P+ N  L+   L  LD EYNP+V  L + + ++
Sbjct: 131 TRKGEMKMEEYLIKMKNLSDKLKLAGSPISNSDLMIQTLNGLDAEYNPVVVKLSDQINLS 190

Query: 65  WETCQ-----YELRQDKLETLKGNLSVNQASVNFVSTNKFKSTPSNS 106
           W   Q     +E R D+     G L++N AS NF +  +F+    NS
Sbjct: 191 WVDVQAQLLAFESRLDQFNNFSG-LTLN-ASANFANKTEFRGNKFNS 235

[Close]

BLAST of Sed0017590 vs. ExPASy TrEMBL
Match: A0A151S6M8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_027809 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.4e-08
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 4   QTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRNLE-M 63
           +T KG +KM+EYLTKMK   D+LA AG  V    L++  LA LD EYNPIV  L + E +
Sbjct: 43  RTRKGGLKMEEYLTKMKEIADDLALAGSSVSTMDLVTQTLAGLDNEYNPIVVQLSDKEHL 102

Query: 64  TWETCQYEL--RQDKLETL--KGNLSVNQAS 90
           TW   Q +L   +++LE +  + NL++N +S
Sbjct: 103 TWVEMQAQLLTYENRLEQINNQSNLTLNPSS 133

The following BLAST results are available for this feature:

BLAST of Sed0017590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151683.1	1.4e-11	42.98	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
KZV34405.1	5.7e-10	42.24	hypothetical protein F511_34028, partial [Dorcoceras hygrometricum]	[more]
XP_038875081.1	5.7e-10	40.30	uncharacterized protein LOC120067610 [Benincasa hispida]	[more]
XP_038902487.1	1.3e-09	48.61	uncharacterized protein LOC120089143 [Benincasa hispida]	[more]
XP_038905164.1	1.7e-09	38.71	uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]	[more]

BLAST of Sed0017590 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0017590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCW4	6.6e-12	42.98	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A2Z7BJW9	2.8e-10	42.24	Uncharacterized protein (Fragment) OS=Dorcoceras hygrometricum OX=472368 GN=F511...	[more]
A0A5C7GU53	1.2e-08	42.00	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027156 PE=4 SV=1	[more]
A0A2Z6P4D5	1.5e-08	40.19	Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 ...	[more]
A0A151S6M8	3.4e-08	45.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]

BLAST of Sed0017590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017590.1	Sed0017590.1	mRNA
Sed0017590.2	Sed0017590.2	mRNA