Sed0017534 (gene) Chayote v1

Overview


Name	Sed0017534
Type	gene
Organism	Sechium edule (Chayote v1)
Description	scarecrow-like protein 8
Location	LG11: 24756237 .. 24756881 (-)
RNA-Seq Expression	Sed0017534
Synteny	Sed0017534

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGGGTCCACTGTACCTTTCAATTTTAAAATAATAAAAGTGGGGTCCACCACTACCTCACTCCTCCCTCTTTTTCCCTTCCAAATCAATTTGCATTTCTCTGCCCTCAGCGTCTATTTTTCGTCGGGCGAGGGACTTGATCATCTTCTTCAGGAGTTGGAGAAACAGCTTCTTGAAGATAACGATGAGGAGGAGGATGGAAGCGATTCGGTTTCTGTGATTACGAGAGTTCGAATAGTGTTTGGTGTGAGACGATTTATGATCTGATCGGTCCTGCGGCGGCGCCGGAGATTCAGAAGTCGGTTTCGACTTCGCCGACTTCATCGTCGTCGTCGGTGGCCTCTCTGGCTGCCGATTCGTGGAAGCAATCTGTCACCAAGGCTGCGGCGGCGATTTCGGAAGGGAAATTGGAGGTTGTGGATGAGATTCTTGTGCAGGACGTTAAGATTTCGAATGCGAGGGGAAGTTCTGTGCAGAGGTTGGCAGAGTACATGGTTTTCGCGTTGAAATCGCGGGTGAATCCGACGGAATTTCCGCCGCCGGTGGCGGAGATTTACGGCAGCGACTCAGTCGCTTTACGACGTTTCTCCCTGCTTCAAGCTCGCGTTCATGGTTGGGAAAGTGGGGTCAATTTAAAATAA

mRNA sequence

ATGGGAGGATGGAAGCGATTCGGTTTCTGTGATTACGAGAGTTCGAATAGTGTTTGGTGTGAGACGATTTATGATCTGATCGGTCCTGCGGCGGCGCCGGAGATTCAGAAGTCGGTTTCGACTTCGCCGACTTCATCGTCGTCGTCGGTGGCCTCTCTGGCTGCCGATTCGTGGAAGCAATCTGTCACCAAGGCTGCGGCGGCGATTTCGGAAGGGAAATTGGAGGTTGTGGATGAGATTCTTGTGCAGGACGTTAAGATTTCGAATGCGAGGGGAAGTTCTGTGCAGAGGTTGGCAGAGTACATGGTTTTCGCGTTGAAATCGCGGGTGAATCCGACGGAATTTCCGCCGCCGGTGGCGGAGATTTACGGCAGCGACTCAGTCGCTTTACGACGTTTCTCCCTGCTTCAAGCTCGCGTTCATGGTTGGGAAAGTGGGGTCAATTTAAAATAA

Coding sequence (CDS)

ATGGGAGGATGGAAGCGATTCGGTTTCTGTGATTACGAGAGTTCGAATAGTGTTTGGTGTGAGACGATTTATGATCTGATCGGTCCTGCGGCGGCGCCGGAGATTCAGAAGTCGGTTTCGACTTCGCCGACTTCATCGTCGTCGTCGGTGGCCTCTCTGGCTGCCGATTCGTGGAAGCAATCTGTCACCAAGGCTGCGGCGGCGATTTCGGAAGGGAAATTGGAGGTTGTGGATGAGATTCTTGTGCAGGACGTTAAGATTTCGAATGCGAGGGGAAGTTCTGTGCAGAGGTTGGCAGAGTACATGGTTTTCGCGTTGAAATCGCGGGTGAATCCGACGGAATTTCCGCCGCCGGTGGCGGAGATTTACGGCAGCGACTCAGTCGCTTTACGACGTTTCTCCCTGCTTCAAGCTCGCGTTCATGGTTGGGAAAGTGGGGTCAATTTAAAATAA

Protein sequence

MGGWKRFGFCDYESSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRVNPTEFPPPVAEIYGSDSVALRRFSLLQARVHGWESGVNLK

Homology

[Close]

BLAST of Sed0017534 vs. NCBI nr
Match: XP_022958035.1 (scarecrow-like protein 8 [Cucurbita moschata])

HSP 1 Score: 157.5 bits (397), Expect = 8.8e-35
Identity = 90/125 (72.00%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 14  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTK 73
           SS S WCET+Y+LI P A P  QK VSTSPT         S+SSSVAS ++DSWKQSV +
Sbjct: 184 SSTSAWCETMYNLISPTAPPN-QKPVSTSPTTSASSSCSSSTSSSVASPSSDSWKQSVIE 243

Query: 74  AAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRVNPTEFPPPVAEIYG 130
           AAAAISEGKL+VVDEIL   VKISNARGSSVQRLAEYMVFALKSRVNP EFPPPVAEI+G
Sbjct: 244 AAAAISEGKLDVVDEILAPVVKISNARGSSVQRLAEYMVFALKSRVNPAEFPPPVAEIFG 303

[Close]

BLAST of Sed0017534 vs. NCBI nr
Match: KAG6605737.1 (Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.5 bits (397), Expect = 8.8e-35
Identity = 90/125 (72.00%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 14  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTK 73
           SS S WCET+Y+LI P A P  QK VSTSPT         S+SSSVAS ++DSWKQSV +
Sbjct: 184 SSTSAWCETMYNLISPTAPPN-QKPVSTSPTTSASSSCSSSTSSSVASPSSDSWKQSVIE 243

Query: 74  AAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRVNPTEFPPPVAEIYG 130
           AAAAISEGKL+VVDEIL   VKISNARGSSVQRLAEYMVFALKSRVNP EFPPPVAEI+G
Sbjct: 244 AAAAISEGKLDVVDEILAPVVKISNARGSSVQRLAEYMVFALKSRVNPAEFPPPVAEIFG 303

[Close]

BLAST of Sed0017534 vs. NCBI nr
Match: KAG7035643.1 (Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.5 bits (397), Expect = 8.8e-35
Identity = 90/125 (72.00%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 14  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTK 73
           SS S WCET+Y+LI P A P  QK VSTSPT         S+SSSVAS ++DSWKQSV +
Sbjct: 184 SSTSAWCETMYNLISPTAPPN-QKPVSTSPTTSASSSCSSSTSSSVASPSSDSWKQSVIE 243

Query: 74  AAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRVNPTEFPPPVAEIYG 130
           AAAAISEGKL+VVDEIL   VKISNARGSSVQRLAEYMVFALKSRVNP EFPPPVAEI+G
Sbjct: 244 AAAAISEGKLDVVDEILAPVVKISNARGSSVQRLAEYMVFALKSRVNPAEFPPPVAEIFG 303

[Close]

BLAST of Sed0017534 vs. NCBI nr
Match: XP_023524891.1 (scarecrow-like protein 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-34
Identity = 90/125 (72.00%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 14  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTK 73
           SS S WCET+Y+LI P A P  QK VSTSPT         S+SSSVAS ++DSWKQSV +
Sbjct: 220 SSTSAWCETMYNLISPTAPPN-QKPVSTSPTTSASSSCSSSTSSSVASPSSDSWKQSVIE 279

Query: 74  AAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRVNPTEFPPPVAEIYG 130
           AAAAISEGKL+VVDEIL   VKISNARGSSVQRLAEYMVFALKSRVNP EFPPPVAEI+G
Sbjct: 280 AAAAISEGKLDVVDEILSPVVKISNARGSSVQRLAEYMVFALKSRVNPAEFPPPVAEIFG 339

[Close]

BLAST of Sed0017534 vs. NCBI nr
Match: XP_023534055.1 (scarecrow-like protein 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-34
Identity = 90/125 (72.00%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 14  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTK 73
           SS S WCET+Y+LI P A P  QK VSTSPT         S+SSSVAS ++DSWKQSV +
Sbjct: 184 SSTSAWCETMYNLISPTAPPN-QKPVSTSPTTSASSSCSSSTSSSVASPSSDSWKQSVIE 243

Query: 74  AAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRVNPTEFPPPVAEIYG 130
           AAAAISEGKL+VVDEIL   VKISNARGSSVQRLAEYMVFALKSRVNP EFPPPVAEI+G
Sbjct: 244 AAAAISEGKLDVVDEILSPVVKISNARGSSVQRLAEYMVFALKSRVNPAEFPPPVAEIFG 303

[Close]

BLAST of Sed0017534 vs. ExPASy Swiss-Prot
Match: Q9FYR7 (Scarecrow-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=SCL8 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.7e-07
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 14  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSSSSSVASLAADS---WKQSVTKAAAAIS 73
           +SNS W   I +L+ P   P    S S S +SSSSS ++ +  +    +Q+V + A AI+
Sbjct: 221 NSNSDW---IQNLVTPNPNPNPVLSFSPSSSSSSSSPSTASTTTSVCSRQTVMEIATAIA 280

Query: 74  EGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRVNPTEFPPPVAEIYGSD 127
           EGK E+  EIL +  +  N   +S ++L ++MV AL+SR+       PV E+YG +
Sbjct: 281 EGKTEIATEILARVSQTPNLERNSEEKLVDFMVAALRSRI-----ASPVTELYGKE 328

[Close]

BLAST of Sed0017534 vs. ExPASy TrEMBL
Match: A0A6J1H2B4 (scarecrow-like protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111459386 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.3e-35
Identity = 90/125 (72.00%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 14  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTK 73
           SS S WCET+Y+LI P A P  QK VSTSPT         S+SSSVAS ++DSWKQSV +
Sbjct: 184 SSTSAWCETMYNLISPTAPPN-QKPVSTSPTTSASSSCSSSTSSSVASPSSDSWKQSVIE 243

Query: 74  AAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRVNPTEFPPPVAEIYG 130
           AAAAISEGKL+VVDEIL   VKISNARGSSVQRLAEYMVFALKSRVNP EFPPPVAEI+G
Sbjct: 244 AAAAISEGKLDVVDEILAPVVKISNARGSSVQRLAEYMVFALKSRVNPAEFPPPVAEIFG 303

[Close]

BLAST of Sed0017534 vs. ExPASy TrEMBL
Match: A0A6J1K574 (scarecrow-like protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111490861 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.2e-34
Identity = 89/125 (71.20%), Postives = 98/125 (78.40%), Query Frame = 0


Query: 14  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTK 73
           SS S WCET+Y+LI P A P  QK VSTSPT         S+SSSVAS ++DSWKQSV +
Sbjct: 184 SSTSAWCETMYNLISPTAPPN-QKPVSTSPTTSASSSCSSSTSSSVASPSSDSWKQSVIE 243

Query: 74  AAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRVNPTEFPPPVAEIYG 130
           AAAAISEGKL+VVDEIL   VK SNARGSSVQRLAEYMVFALKSRVNP EFPPPVAEI+G
Sbjct: 244 AAAAISEGKLDVVDEILAPVVKFSNARGSSVQRLAEYMVFALKSRVNPAEFPPPVAEIFG 303

[Close]

BLAST of Sed0017534 vs. ExPASy TrEMBL
Match: A0A5A7TML4 (Scarecrow-like protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00990 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.4e-32
Identity = 84/122 (68.85%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 14  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSS------SSSVASLAADSWKQSVTKAAA 73
           SSNS WCETIY+LI P  +P  Q    TS  SS      SSSVAS A+DSWKQSV +AA 
Sbjct: 182 SSNSAWCETIYNLISPNPSPTAQNPSPTSSASSSCSSSTSSSVASPASDSWKQSVIEAAT 241

Query: 74  AISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRVNPTEFPPPVAEIYGSDS 130
           AISEGKLE +DEIL   VKISNARG+SVQRLAEYMV ALKSRVNP EFPPPV EIYG + 
Sbjct: 242 AISEGKLEGLDEILAPVVKISNARGNSVQRLAEYMVLALKSRVNPVEFPPPVVEIYGDEH 301

[Close]

BLAST of Sed0017534 vs. ExPASy TrEMBL
Match: E5GBC7 (GRAS family transcription factor OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.4e-32
Identity = 84/122 (68.85%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 14  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSS------SSSVASLAADSWKQSVTKAAA 73
           SSNS WCETIY+LI P  +P  Q    TS  SS      SSSVAS A+DSWKQSV +AA 
Sbjct: 182 SSNSAWCETIYNLISPNPSPTAQNPSPTSSASSSCSSSTSSSVASPASDSWKQSVIEAAT 241

Query: 74  AISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRVNPTEFPPPVAEIYGSDS 130
           AISEGKLE +DEIL   VKISNARG+SVQRLAEYMV ALKSRVNP EFPPPV EIYG + 
Sbjct: 242 AISEGKLEGLDEILAPVVKISNARGNSVQRLAEYMVLALKSRVNPVEFPPPVVEIYGDEH 301

[Close]

BLAST of Sed0017534 vs. ExPASy TrEMBL
Match: A0A1S3AUC8 (scarecrow-like protein 8 OS=Cucumis melo OX=3656 GN=LOC103482912 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.4e-32
Identity = 84/122 (68.85%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 14  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSS------SSSVASLAADSWKQSVTKAAA 73
           SSNS WCETIY+LI P  +P  Q    TS  SS      SSSVAS A+DSWKQSV +AA 
Sbjct: 182 SSNSAWCETIYNLISPNPSPTAQNPSPTSSASSSCSSSTSSSVASPASDSWKQSVIEAAT 241

Query: 74  AISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRVNPTEFPPPVAEIYGSDS 130
           AISEGKLE +DEIL   VKISNARG+SVQRLAEYMV ALKSRVNP EFPPPV EIYG + 
Sbjct: 242 AISEGKLEGLDEILAPVVKISNARGNSVQRLAEYMVLALKSRVNPVEFPPPVVEIYGDEH 301

[Close]

BLAST of Sed0017534 vs. TAIR 10
Match: AT5G52510.1 (SCARECROW-like 8 )

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-08
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 14  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSSSSSVASLAADS---WKQSVTKAAAAIS 73
           +SNS W   I +L+ P   P    S S S +SSSSS ++ +  +    +Q+V + A AI+
Sbjct: 221 NSNSDW---IQNLVTPNPNPNPVLSFSPSSSSSSSSPSTASTTTSVCSRQTVMEIATAIA 280

Query: 74  EGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRVNPTEFPPPVAEIYGSD 127
           EGK E+  EIL +  +  N   +S ++L ++MV AL+SR+       PV E+YG +
Sbjct: 281 EGKTEIATEILARVSQTPNLERNSEEKLVDFMVAALRSRI-----ASPVTELYGKE 328

The following BLAST results are available for this feature:

BLAST of Sed0017534 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958035.1	8.8e-35	72.00	scarecrow-like protein 8 [Cucurbita moschata]	[more]
KAG6605737.1	8.8e-35	72.00	Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7035643.1	8.8e-35	72.00	Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023524891.1	1.5e-34	72.00	scarecrow-like protein 8 [Cucurbita pepo subsp. pepo]	[more]
XP_023534055.1	1.5e-34	72.00	scarecrow-like protein 8 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0017534 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FYR7	4.7e-07	36.21	Scarecrow-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=SCL8 PE=2 SV=1	[more]

BLAST of Sed0017534 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2B4	4.3e-35	72.00	scarecrow-like protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111459386 PE=3 SV=1	[more]
A0A6J1K574	1.2e-34	71.20	scarecrow-like protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111490861 PE=3 SV=1	[more]
A0A5A7TML4	4.4e-32	68.85	Scarecrow-like protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
E5GBC7	4.4e-32	68.85	GRAS family transcription factor OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3AUC8	4.4e-32	68.85	scarecrow-like protein 8 OS=Cucumis melo OX=3656 GN=LOC103482912 PE=3 SV=1	[more]

BLAST of Sed0017534 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52510.1	3.4e-08	36.21	SCARECROW-like 8	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 60..112 e-value: 4.5E-6 score: 25.9
IPR005202	Transcription factor GRAS	PANTHER	PTHR31636	OSJNBA0084A10.13 PROTEIN-RELATED	coord: 16..128
IPR005202	Transcription factor GRAS	PROSITE	PS50985	GRAS	coord: 49..150 score: 10.692897
IPR030013	Scarecrow-like protein 8	PANTHER	PTHR31636:SF221	SCARECROW-LIKE PROTEIN 8	coord: 16..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017534.1	Sed0017534.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding