Sed0017530 (gene) Chayote v1

Overview


Name	Sed0017530
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L12, chloroplastic-like
Location	LG03: 812633 .. 813190 (+)
RNA-Seq Expression	Sed0017530
Synteny	Sed0017530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACAATCTCCACTCTCACCACTCTCCGTTCCCCTTCTCACCTTCCCATTTCCCATCTCTCTTCCTCTCACTCTCCCAAATTCACATCCCTCCAACTCCCATTCCACCATTCCTCCCACCGCGCCACCCTCCTCCGCCCCATCTCCGCCGTGTCCGCCCCCGAGAAAATCGAAAAGCTCGGCGCCGACATCTCCAGCCTCACCCTTGAAGAAGCCCGCATTCTGGTGGACTTCCTCCAGGACAAGCTGGGTGTCTCCGCCGCCTCCTTCGCCCCTGCGGCAGTCGTGGCAGCGCCAGCGGCTGCCGGGGATGCGGCTGCCGAGGCGGTCGAGGAGAAGACGGAGTTCGACGTGGTGATTGAGGAGGTGCCAAGTAATGCCAGAATTGCAGTGATCAAGTCAGTGAGAGCATTGACAAGCTTGGCTCTGAAGGAAGCCAAAGAACTAATTGAAGGTCTGCCCAAGAAGTTCAAGGAAGGAATTTCCAAAGAAGAGGCTGAGGATGCAAAGAAACAGCTTGAAGAAGCTGGAGCTAAAATCGCCATTGTTTAA

mRNA sequence

ATGGCTTCCACAATCTCCACTCTCACCACTCTCCGTTCCCCTTCTCACCTTCCCATTTCCCATCTCTCTTCCTCTCACTCTCCCAAATTCACATCCCTCCAACTCCCATTCCACCATTCCTCCCACCGCGCCACCCTCCTCCGCCCCATCTCCGCCGTGTCCGCCCCCGAGAAAATCGAAAAGCTCGGCGCCGACATCTCCAGCCTCACCCTTGAAGAAGCCCGCATTCTGGTGGACTTCCTCCAGGACAAGCTGGGTGTCTCCGCCGCCTCCTTCGCCCCTGCGGCAGTCGTGGCAGCGCCAGCGGCTGCCGGGGATGCGGCTGCCGAGGCGGTCGAGGAGAAGACGGAGTTCGACGTGGTGATTGAGGAGGTGCCAAGTAATGCCAGAATTGCAGTGATCAAGTCAGTGAGAGCATTGACAAGCTTGGCTCTGAAGGAAGCCAAAGAACTAATTGAAGGTCTGCCCAAGAAGTTCAAGGAAGGAATTTCCAAAGAAGAGGCTGAGGATGCAAAGAAACAGCTTGAAGAAGCTGGAGCTAAAATCGCCATTGTTTAA

Coding sequence (CDS)

ATGGCTTCCACAATCTCCACTCTCACCACTCTCCGTTCCCCTTCTCACCTTCCCATTTCCCATCTCTCTTCCTCTCACTCTCCCAAATTCACATCCCTCCAACTCCCATTCCACCATTCCTCCCACCGCGCCACCCTCCTCCGCCCCATCTCCGCCGTGTCCGCCCCCGAGAAAATCGAAAAGCTCGGCGCCGACATCTCCAGCCTCACCCTTGAAGAAGCCCGCATTCTGGTGGACTTCCTCCAGGACAAGCTGGGTGTCTCCGCCGCCTCCTTCGCCCCTGCGGCAGTCGTGGCAGCGCCAGCGGCTGCCGGGGATGCGGCTGCCGAGGCGGTCGAGGAGAAGACGGAGTTCGACGTGGTGATTGAGGAGGTGCCAAGTAATGCCAGAATTGCAGTGATCAAGTCAGTGAGAGCATTGACAAGCTTGGCTCTGAAGGAAGCCAAAGAACTAATTGAAGGTCTGCCCAAGAAGTTCAAGGAAGGAATTTCCAAAGAAGAGGCTGAGGATGCAAAGAAACAGCTTGAAGAAGCTGGAGCTAAAATCGCCATTGTTTAA

Protein sequence

MASTISTLTTLRSPSHLPISHLSSSHSPKFTSLQLPFHHSSHRATLLRPISAVSAPEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAPAAAGDAAAEAVEEKTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAIV

Homology

[Close]

BLAST of Sed0017530 vs. NCBI nr
Match: XP_023536532.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 269.2 bits (687), Expect = 2.6e-68
Identity = 165/191 (86.39%), Postives = 175/191 (91.62%), Query Frame = 0


Query: 1   MASTISTLTTLRSPSHLPISHLS-SSHSPKFTSLQLPFHHS----SHRATLLRPISAVSA 60
           MAST+STLTTLRSP+HL  SH S S+ S   T+LQ PF+ S    SHRAT LRPI+AVSA
Sbjct: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAP-AAAGDAAAEAVEE 120
           PEKIEKLGADIS+LTLEEARILVDFLQDKLGVSAA+FAPAAVVAAP AAAGDAAAEAVEE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAAEAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIE+VPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 186
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Sed0017530 vs. NCBI nr
Match: XP_022960313.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata] >KAG6602432.1 50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269.2 bits (687), Expect = 2.6e-68
Identity = 165/191 (86.39%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 1   MASTISTLTTLRSPSHLPISHLS-SSHSPKFTSLQLPFHHS----SHRATLLRPISAVSA 60
           MAST+STLTTLRSP HL  SH S S+ S   T+LQ PF+ S    SHRAT LRPI+AVSA
Sbjct: 1   MASTLSTLTTLRSPPHLSYSHSSFSTQSSTSTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAP-AAAGDAAAEAVEE 120
           PEKIEKLGADIS+LTLEEARILVDFLQDKLGVSAA+FAPAAVVAAP AAAGDAAAEAVEE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAAEAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIE+VPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 186
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Sed0017530 vs. NCBI nr
Match: KAG7033112.1 (50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.5 bits (685), Expect = 4.4e-68
Identity = 165/191 (86.39%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 1   MASTISTLTTLRSPSHLPISHLS-SSHSPKFTSLQLPFHHS----SHRATLLRPISAVSA 60
           MAST+STLTTLRSP HL  SH S S+ S   T+LQ PF+ S    SHRAT LRPI+AVSA
Sbjct: 1   MASTLSTLTTLRSPPHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAP-AAAGDAAAEAVEE 120
           PEKIEKLGADIS+LTLEEARILVDFLQDKLGVSAA+FAPAAVVAAP AAAGDAAAEAVEE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAAEAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIE+VPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 186
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Sed0017530 vs. NCBI nr
Match: XP_022989905.1 (50S ribosomal protein L12, chloroplastic [Cucurbita maxima])

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-67
Identity = 164/191 (85.86%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 1   MASTISTLTTLRSPSHLPISHLS-SSHSPKFTSLQLPFHHS----SHRATLLRPISAVSA 60
           MAST+STLT+LRSP HL  SH S S+ S   T+LQ PF+ S    SHRATLLRPI+AVSA
Sbjct: 1   MASTLSTLTSLRSPLHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATLLRPIAAVSA 60

Query: 61  PEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAP-AAAGDAAAEAVEE 120
           PEKIEKLGADIS+LTLEEARILVDFLQDKLGVSAA+FAPA VVAAP AAAGDAAAEAVEE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAVVVAAPGAAAGDAAAEAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIE+VPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 186
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Sed0017530 vs. NCBI nr
Match: XP_038890576.1 (50S ribosomal protein L12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 256.9 bits (655), Expect = 1.3e-64
Identity = 159/192 (82.81%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MASTISTLTTLRSPSHLPISHLS-SSHSPKFTSLQLPFHHS----SHRATLLRPISAVSA 60
           MAST+S L TL SPSHL  SH S S+HS K T+LQ P H S    SHRAT LRPI+A+SA
Sbjct: 1   MASTLSIL-TLHSPSHLSYSHSSLSTHSFKSTTLQFPSHLSSIAVSHRATHLRPIAAISA 60

Query: 61  PEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAP--AAAGDAAAEAVE 120
           PEKIEKLG+DIS+LTLEEAR+LVDFLQDKLGVSAASFAPAAVVAAP   A G+AAAEAVE
Sbjct: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAASFAPAAVVAAPGGTAGGEAAAEAVE 120

Query: 121 EKTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIE+VPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 186
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Sed0017530 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 206.1 bits (523), Expect = 3.5e-52
Identity = 134/193 (69.43%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 1   MASTISTLTTLRSPSHLPISHLSSSHSPKFTS-LQLPFHH-------SSHRATLLRPISA 60
           MA+T +T+ TL  PS    SH +SS  PK    LQ PF         SS R T LRPI+A
Sbjct: 1   MAAT-TTMATLNLPS--LTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAA 60

Query: 61  VSAPEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAPAAAGDAAAEAV 120
           V APEKIE+LG  +S LTLEEAR+LVD+LQDKLGVSAASFAPAA VAAP A  D AA AV
Sbjct: 61  VEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPAD-AAPAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDV I+EVPSNARI+VIK+VRALTSL LKEAKELIEGLPKK KEG+SK++AEDAK
Sbjct: 121 EEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAK 180

Query: 181 KQLEEAGAKIAIV 186
           KQLE+AGAK++IV
Sbjct: 181 KQLEDAGAKVSIV 189

[Close]

BLAST of Sed0017530 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-51
Identity = 132/191 (69.11%), Postives = 157/191 (82.20%), Query Frame = 0


Query: 1   MASTISTLTTLRSPSHLPISHLSSSHS----PKFTSLQLPFHH---SSHRATLLRPISAV 60
           MAST+ST+ TLRSPS    S  +S+H+    PK T L+ P       + RAT LRP++AV
Sbjct: 1   MASTLSTI-TLRSPSP---STATSTHASIPFPKKT-LEFPIRTPKLQNRRATFLRPLAAV 60

Query: 61  SAPEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAPAAAGDAAAEAVE 120
            APEK+ +LG +IS+LTL +A+ LV++LQDKLGV+AASFAPAAVVAAP AA +A A  VE
Sbjct: 61  EAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAAEAPA-VVE 120

Query: 121 EKTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVI+EVPSNARIA IK+VRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDAKK
Sbjct: 121 EKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKK 180

Query: 181 QLEEAGAKIAI 185
           QLEEAGAK++I
Sbjct: 181 QLEEAGAKVSI 185

[Close]

BLAST of Sed0017530 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.3e-51
Identity = 129/189 (68.25%), Postives = 152/189 (80.42%), Query Frame = 0


Query: 1   MASTISTLTTLRSPSHLPISHLSSSHSPKFTSLQLP-----FHHSSHRATLLRPISAVSA 60
           MAST+ST+ TLRSPS    S   +S      +L+ P      HH   RAT LRP++AV A
Sbjct: 1   MASTLSTI-TLRSPSPSTASSTHASIPFPKKALEFPIRTPKLHH--RRATFLRPLAAVEA 60

Query: 61  PEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAPAAAGDAAAEAVEEK 120
           PEK+ +LG +IS+LTL +A+ LV++LQDKLGV+AASFAPAAV AAP AA +A A  VEEK
Sbjct: 61  PEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAAEAPA-VVEEK 120

Query: 121 TEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVI+EVPSNARIA IK+VRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDAKKQL
Sbjct: 121 TEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 180

Query: 181 EEAGAKIAI 185
           EEAGAK++I
Sbjct: 181 EEAGAKVSI 185

[Close]

BLAST of Sed0017530 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 202.6 bits (514), Expect = 3.9e-51
Identity = 130/188 (69.15%), Postives = 153/188 (81.38%), Query Frame = 0


Query: 2   ASTISTLTTLRSPSHLPISHLSSSH-SPKFTSLQLPFH---HSSHRATLLRPISAVSAPE 61
           ++T+S  TT+RS S  P++  S+ H   K T+++ PF     SSHRA  LRPISAV APE
Sbjct: 3   STTLSIATTIRSSS--PLTSASTHHFLSKPTAIEFPFRLSSSSSHRAINLRPISAVEAPE 62

Query: 62  KIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAP-AAVVAAPAAAGDAAAEAVEEKT 121
           KIEK+G++ISSLTLEEARILVD+LQDK GVS  S AP AA VAAPA  G  AA  VEE+T
Sbjct: 63  KIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG--AAAVVEEQT 122

Query: 122 EFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLE 181
           EFDVVI EVPS++RIAVIK+VRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AKK LE
Sbjct: 123 EFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLE 182

Query: 182 EAGAKIAI 185
           EAGAK++I
Sbjct: 183 EAGAKVSI 186

[Close]

BLAST of Sed0017530 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.6e-49
Identity = 126/192 (65.62%), Postives = 153/192 (79.69%), Query Frame = 0


Query: 2   ASTISTLTTLRSPSHLPISHLSSSHSP-KFTSLQLPFHHS-------SHRATLLRPISAV 61
           ++T+S  TT+RS S+  ++  S +H P + T+++ P           +HRAT LRPI+AV
Sbjct: 3   STTLSIATTIRSSSYPTLA--SINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIAAV 62

Query: 62  SAPEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAP-AAVVAAPAAAGDAAAEAV 121
            APEKIEK+G++ISSLTLEEARILVD+LQDK GVS  S AP AA VAAPA  G  AA  V
Sbjct: 63  EAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG--AAAVV 122

Query: 122 EEKTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 181
           EE+TEFDVVI EVPS++RIAVIK+VRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AK
Sbjct: 123 EEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAK 182

Query: 182 KQLEEAGAKIAI 185
           K LEEAGAK++I
Sbjct: 183 KTLEEAGAKVSI 190

[Close]

BLAST of Sed0017530 vs. ExPASy TrEMBL
Match: A0A6J1H8H9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111461079 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.2e-68
Identity = 165/191 (86.39%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 1   MASTISTLTTLRSPSHLPISHLS-SSHSPKFTSLQLPFHHS----SHRATLLRPISAVSA 60
           MAST+STLTTLRSP HL  SH S S+ S   T+LQ PF+ S    SHRAT LRPI+AVSA
Sbjct: 1   MASTLSTLTTLRSPPHLSYSHSSFSTQSSTSTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAP-AAAGDAAAEAVEE 120
           PEKIEKLGADIS+LTLEEARILVDFLQDKLGVSAA+FAPAAVVAAP AAAGDAAAEAVEE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAAGDAAAEAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIE+VPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 186
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Sed0017530 vs. ExPASy TrEMBL
Match: A0A6J1JNN0 (50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486956 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.2e-68
Identity = 164/191 (85.86%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 1   MASTISTLTTLRSPSHLPISHLS-SSHSPKFTSLQLPFHHS----SHRATLLRPISAVSA 60
           MAST+STLT+LRSP HL  SH S S+ S   T+LQ PF+ S    SHRATLLRPI+AVSA
Sbjct: 1   MASTLSTLTSLRSPLHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATLLRPIAAVSA 60

Query: 61  PEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAP-AAAGDAAAEAVEE 120
           PEKIEKLGADIS+LTLEEARILVDFLQDKLGVSAA+FAPA VVAAP AAAGDAAAEAVEE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAVVVAAPGAAAGDAAAEAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIE+VPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 186
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Sed0017530 vs. ExPASy TrEMBL
Match: A0A6J1BXR2 (50S ribosomal protein L12, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111006430 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.2e-64
Identity = 160/193 (82.90%), Postives = 175/193 (90.67%), Query Frame = 0


Query: 1   MASTISTLTTLRSPSHLPISHLS-SSHSPKFTSLQLPFHHS-----SHRATLLRPISAVS 60
           MAST+STL TLRSPS+L  S  S S+HS K +++Q PF+ S     SHRATLLRPI+AVS
Sbjct: 1   MASTLSTL-TLRSPSYLSHSPRSISTHSSK-SAVQFPFYPSSAAAISHRATLLRPIAAVS 60

Query: 61  APEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAP--AAAGDAAAEAV 120
           APEKIEKLG+DIS+LTLEEAR+LVDFLQDKLGVSAA+FAPAAVVAAP  A AGDAAAEAV
Sbjct: 61  APEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAGAGDAAAEAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIE+VPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEG+SKEEAEDAK
Sbjct: 121 EEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 186
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 191

[Close]

BLAST of Sed0017530 vs. ExPASy TrEMBL
Match: A0A6J1JTI3 (50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489595 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.6e-62
Identity = 156/188 (82.98%), Postives = 166/188 (88.30%), Query Frame = 0


Query: 1   MASTISTLTTLRSPSHLPISHLS-SSHSPKFTSLQLPFHHSSHRATLLRPISAVSAPEKI 60
           MAST+STL TLR+PS L  SH S S+ S K T+L  P    SHRAT LRPI+AVSAPEKI
Sbjct: 1   MASTLSTL-TLRTPSLLSHSHSSFSTLSSKPTTLPFP----SHRATRLRPIAAVSAPEKI 60

Query: 61  EKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAP--AAAGDAAAEAVEEKTE 120
           EKLG+DIS+LTLEEARILVDFLQDKLGVSAA+FAPAAVVAAP   A GD AAEAVEEKTE
Sbjct: 61  EKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDVAAEAVEEKTE 120

Query: 121 FDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEE 180
           FDVVIEEVPSNARIAVIKSVRALT+LALKEAKELIEGLPKKFKEG+SKEEAEDAKKQLEE
Sbjct: 121 FDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEE 180

Query: 181 AGAKIAIV 186
           AGAKI IV
Sbjct: 181 AGAKITIV 183

[Close]

BLAST of Sed0017530 vs. ExPASy TrEMBL
Match: A0A5A7T262 (50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001220 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.3e-61
Identity = 152/188 (80.85%), Postives = 165/188 (87.77%), Query Frame = 0


Query: 1   MASTISTLTTLRSPSHLPISHLS-SSHSPKFTSLQLPFHHSSHRATLLRPISAVSAPEKI 60
           MAS++STL TL +P  L  SH   S HS + T+L  P+     RATLLRPI+AVSAPEKI
Sbjct: 1   MASSLSTL-TLNTPFPLSYSHSKFSPHSFRSTTLHFPY----RRATLLRPIAAVSAPEKI 60

Query: 61  EKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAP--AAAGDAAAEAVEEKTE 120
           EKLG+DISSLTLEEAR+LVDFLQDKLGVSAA+FAPAAVVAAP  A  GDAAAEAVEEKTE
Sbjct: 61  EKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTE 120

Query: 121 FDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEE 180
           FDVVIE+VPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKKQLEE
Sbjct: 121 FDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEE 180

Query: 181 AGAKIAIV 186
           AGAKIAIV
Sbjct: 181 AGAKIAIV 183

[Close]

BLAST of Sed0017530 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 202.6 bits (514), Expect = 2.7e-52
Identity = 130/188 (69.15%), Postives = 153/188 (81.38%), Query Frame = 0


Query: 2   ASTISTLTTLRSPSHLPISHLSSSH-SPKFTSLQLPFH---HSSHRATLLRPISAVSAPE 61
           ++T+S  TT+RS S  P++  S+ H   K T+++ PF     SSHRA  LRPISAV APE
Sbjct: 3   STTLSIATTIRSSS--PLTSASTHHFLSKPTAIEFPFRLSSSSSHRAINLRPISAVEAPE 62

Query: 62  KIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAP-AAVVAAPAAAGDAAAEAVEEKT 121
           KIEK+G++ISSLTLEEARILVD+LQDK GVS  S AP AA VAAPA  G  AA  VEE+T
Sbjct: 63  KIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG--AAAVVEEQT 122

Query: 122 EFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLE 181
           EFDVVI EVPS++RIAVIK+VRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AKK LE
Sbjct: 123 EFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLE 182

Query: 182 EAGAKIAI 185
           EAGAK++I
Sbjct: 183 EAGAKVSI 186

[Close]

BLAST of Sed0017530 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 196.1 bits (497), Expect = 2.6e-50
Identity = 126/192 (65.62%), Postives = 153/192 (79.69%), Query Frame = 0


Query: 2   ASTISTLTTLRSPSHLPISHLSSSHSP-KFTSLQLPFHHS-------SHRATLLRPISAV 61
           ++T+S  TT+RS S+  ++  S +H P + T+++ P           +HRAT LRPI+AV
Sbjct: 3   STTLSIATTIRSSSYPTLA--SINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIAAV 62

Query: 62  SAPEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAP-AAVVAAPAAAGDAAAEAV 121
            APEKIEK+G++ISSLTLEEARILVD+LQDK GVS  S AP AA VAAPA  G  AA  V
Sbjct: 63  EAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG--AAAVV 122

Query: 122 EEKTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 181
           EE+TEFDVVI EVPS++RIAVIK+VRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AK
Sbjct: 123 EEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAK 182

Query: 182 KQLEEAGAKIAI 185
           K LEEAGAK++I
Sbjct: 183 KTLEEAGAKVSI 190

[Close]

BLAST of Sed0017530 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-40
Identity = 105/193 (54.40%), Postives = 135/193 (69.95%), Query Frame = 0


Query: 2   ASTISTLTTLRSPSHLPISHLSSSH--SPKFTSLQLPFHHS-------SHRATLLRPISA 61
           A+T+S  TT+RS S    S L+S+H    +  S++ PF          SHRA  L PISA
Sbjct: 3   ATTLSIATTIRSSSF--SSGLASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISA 62

Query: 62  VSAPEKIEKLGADISSLTLEEARILVDFLQDKLGVSAASFAPAAVVAAPAAAGDAAAEAV 121
           V  P+KI+K+G++ISSLTLEE+RILVD++QDK GVS    APAA    P      A  +V
Sbjct: 63  VKTPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGGATASV 122

Query: 122 EEKTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 181
           E +T FDVVI +VP   RIAVI ++RA+TSL+L E+KELIEG PKKFKEG++K+EAE+ K
Sbjct: 123 ERQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDK 182

Query: 182 KQLEEAGAKIAIV 186
            QLEEAGAK++IV
Sbjct: 183 TQLEEAGAKVSIV 193

[Close]

BLAST of Sed0017530 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 75.1 bits (183), Expect = 6.6e-14
Identity = 53/142 (37.32%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 51  SAVSAPEKIEKLGADISSLTLEEARILVDFLQDKLGVS----AASFAPAAVV----AAPA 110
           S  +  E + K+  ++S+LTL E   L + L+ KL +S     A+  P   +    A+ +
Sbjct: 37  SPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGASKS 96

Query: 111 AAGDAAAEAVEEKTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEG 170
           A G+   +  E KT FDV+++   + ++I VIK VR +T+L LKEAK+L+E  P   K+G
Sbjct: 97  AGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKG 156

Query: 171 ISKEEAEDAKKQLEEAGAKIAI 185
           +SKEEAE   ++L+  GAK+A+
Sbjct: 157 VSKEEAEKIIEKLKAVGAKVAM 178

[Close]

BLAST of Sed0017530 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-11
Identity = 54/154 (35.06%), Postives = 84/154 (54.55%), Query Frame = 0


Query: 38  HHSSHRATLLRPISAVSAPE----KIEKLGADISSLTLEEARILVDFLQDKLGVSAASFA 97
           H ++  ++  R + AV++PE    K+E++  D+  L   E          K+G++    A
Sbjct: 17  HRTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYGSA 76

Query: 98  PAAVVAAPAAAGDAAAEA---VEEKTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKE 157
               VA   + GDA+A       EKT FDV +E+  + ++I VIK +RA T L LKEAK 
Sbjct: 77  ----VAVTGSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKA 136

Query: 158 LIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAI 185
           L+E  P   K G++KEEAE   ++L+  GA +A+
Sbjct: 137 LVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVAL 166

The following BLAST results are available for this feature:

BLAST of Sed0017530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536532.1	2.6e-68	86.39	50S ribosomal protein L12, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960313.1	2.6e-68	86.39	50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata] >KAG6602432.1...	[more]
KAG7033112.1	4.4e-68	86.39	50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]
XP_022989905.1	1.3e-67	85.86	50S ribosomal protein L12, chloroplastic [Cucurbita maxima]	[more]
XP_038890576.1	1.3e-64	82.81	50S ribosomal protein L12, chloroplastic-like [Benincasa hispida]	[more]

BLAST of Sed0017530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P02398	3.5e-52	69.43	50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P...	[more]
P36688	1.3e-51	69.11	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P24929	2.3e-51	68.25	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
P36212	3.9e-51	69.15	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36210	3.6e-49	65.63	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]

BLAST of Sed0017530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8H9	1.2e-68	86.39	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JNN0	6.2e-68	85.86	50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1BXR2	3.2e-64	82.90	50S ribosomal protein L12, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1JTI3	6.6e-62	82.98	50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A5A7T262	4.3e-61	80.85	50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Sed0017530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27850.1	2.7e-52	69.15	ribosomal protein L12-C	[more]
AT3G27830.1	2.6e-50	65.63	ribosomal protein L12-A	[more]
AT3G27840.1	1.1e-40	54.40	ribosomal protein L12-B	[more]
AT4G36420.1	6.6e-14	37.32	Ribosomal protein L12 family protein	[more]
AT4G37660.1	1.8e-11	35.06	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 168..185
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 1..184
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 58..184 e-value: 8.8E-33 score: 111.4
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..184
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 54..185 score: 22.298275
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 57..184 e-value: 4.169E-40 score: 130.738
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 114..184 e-value: 3.0E-25 score: 90.1
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 113..184
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 58..113 e-value: 1.8E-13 score: 52.3
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 58..120
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 118..184 e-value: 8.0E-24 score: 83.8
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 58..107 e-value: 2.2E-13 score: 49.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017530.1	Sed0017530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome