Sed0017506 (gene) Chayote v1

Overview


Name	Sed0017506
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Transcription factor like
Location	LG06: 40226144 .. 40227203 (+)
RNA-Seq Expression	Sed0017506
Synteny	Sed0017506

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGCAGAAACTCACGTTCTAGGCGCTCGTCTGTTGGTTCTAGGAACACTATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCACCTCATCCCCGAGATTCGCAATGCCCGTTCCTCTTCCACGGTATATATCGATTCTTCTTCTTCCTTCCTTATTACCTTCATCATTACTCGTCATACATTAATGAAAGTTCTGTTTGATAACTATAAGTAGGTTTTATTTTGTACGATCAACTACAAAACTGGTTTTACTTATTTCAAAATCATTTGTCTTTTAAGCGATAAACTTTTGATAAATACCTAAACCTTTGCTTTTTTTTTTCATTATCTTTACACATGATATGTATATAATAGACAAGAAAATATTTAACAAATTCTCTATATTATTTAACAATATTTAAATACTAACTCTAGAAATTATATTTCTATAGTTTCTAATACTTTTGTTTAAGTTGGAGATTGTAAACCGTAAATGACTAACTTAAAAACAAAGTTATTAGCATATTCGTTCGCAGCACACATGAATGCTATATTTGTTGTCGAACAATATCAAACCAACTTATATATGATCGATCCATATTAACTTATACCGTTAGATACATGATTGCACTCATTCACACAAGCATCGTCACACATGAATTATCATCAATCATACATCCAAATAAAAGATACCAAAAACACGATGCTGAGTGTCACACACATTATTGTATCACAAGAATCACACTGAATTTCACGAATCTTGGAACACCCAACCCATAATGACAACCCACATCATCAATATGTAACAAATTGTAGAAACTATAACAATATTAAAATACAAAATTTAGAAGTTATATTCTTATTGACAGCATGAATTATTTAGTGTTAATATATGTGATTTTACATTGATATAGGTATCAGGTTCAAAGGTTCTACAAGAGATTTGCAATTACATAAGAAACTTGCAAAGAGAGGTGGGGGACTTAAGCGACCGATTATCAGAACTATTGGCTTCAACAGACCCTGAAAGTGCTCAAGCTGCAATAATTAGAACTTTACTTATGTAA

mRNA sequence

ATGTCGGGCAGAAACTCACGTTCTAGGCGCTCGTCTGTTGGTTCTAGGAACACTATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCACCTCATCCCCGAGATTCGCAATGCCCGTTCCTCTTCCACGGTATCAGGTTCAAAGGTTCTACAAGAGATTTGCAATTACATAAGAAACTTGCAAAGAGAGGTGGGGGACTTAAGCGACCGATTATCAGAACTATTGGCTTCAACAGACCCTGAAAGTGCTCAAGCTGCAATAATTAGAACTTTACTTATGTAA

Coding sequence (CDS)

ATGTCGGGCAGAAACTCACGTTCTAGGCGCTCGTCTGTTGGTTCTAGGAACACTATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCACCTCATCCCCGAGATTCGCAATGCCCGTTCCTCTTCCACGGTATCAGGTTCAAAGGTTCTACAAGAGATTTGCAATTACATAAGAAACTTGCAAAGAGAGGTGGGGGACTTAAGCGACCGATTATCAGAACTATTGGCTTCAACAGACCCTGAAAGTGCTCAAGCTGCAATAATTAGAACTTTACTTATGTAA

Protein sequence

MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM

Homology

[Close]

BLAST of Sed0017506 vs. NCBI nr
Match: XP_004135185.1 (transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa_009290 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MSGR+SRSRRS VGSRN ISD+QIADLISKLQ LIPEIRN RSSS VS SKVLQE CNYI
Sbjct: 1  MSGRSSRSRRSGVGSRN-ISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM 97
          R+LQREV DLSDRLSELLASTDPESAQAAIIR+LLM
Sbjct: 61 RSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0017506 vs. NCBI nr
Match: XP_008446331.1 (PREDICTED: transcription factor PRE6-like [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 4.5e-32
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MSGR+SRSRRS VGSRN ISD+QIADLISKLQ LIPEIRN RSSS VS SKVLQE CNYI
Sbjct: 1  MSGRSSRSRRSGVGSRN-ISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM 97
          R+LQREV DLSDRLS+LLASTDPESAQAAIIR+LLM
Sbjct: 61 RSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0017506 vs. NCBI nr
Match: XP_038893351.1 (transcription factor PRE6-like [Benincasa hispida])

HSP 1 Score: 147.5 bits (371), Expect = 5.8e-32
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MSGR+SRSRRS V SRN ISDDQIADLISKLQ LIPEIRN RSSS VS SKVLQE CNYI
Sbjct: 1  MSGRSSRSRRSGVPSRN-ISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM 97
          R+LQREV DLSDRLSELLASTDPESAQAAIIR+LLM
Sbjct: 61 RSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0017506 vs. NCBI nr
Match: XP_022945906.1 (transcription factor PRE6-like [Cucurbita moschata] >XP_023541313.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-31
Identity = 83/96 (86.46%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MS R+SRSRRSSV S N ISD+QIADLISKLQ LIPEIRNARSSS VS SKVLQE CNYI
Sbjct: 1  MSSRSSRSRRSSVPSSN-ISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM 97
          R+LQREVGDLSDRLSELL STDPESAQAAIIR+LLM
Sbjct: 61 RSLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0017506 vs. NCBI nr
Match: XP_022151230.1 (transcription factor PRE6-like [Momordica charantia])

HSP 1 Score: 144.8 bits (364), Expect = 3.8e-31
Identity = 83/96 (86.46%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MS R+SRSRRS V SRN ISDDQIADLISKLQ LIPEIRNARSSS VS SKVLQE CNYI
Sbjct: 1  MSSRSSRSRRSPVPSRN-ISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM 97
          R+LQREV DLS+RLSELLASTDPESAQAAIIR+LLM
Sbjct: 61 RSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0017506 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-25
Identity = 69/95 (72.63%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MS R S   R S  SR  ISDDQI+DL+SKLQHLIPE+R  RS   VS SKVLQE CNYI
Sbjct: 1  MSSRRSSRSRQSGSSR--ISDDQISDLVSKLQHLIPELRRRRSDK-VSASKVLQETCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL 96
          RNL REV DLSDRLSELLASTD  SA+AAIIR+LL
Sbjct: 61 RNLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Sed0017506 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.9e-23
Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 7  RSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQRE 66
          RSR++S  SR  ISDDQI DLISKL+  IPEIR  R S+TVS SKVLQE CNYIRNL +E
Sbjct: 6  RSRQASSSSR--ISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKE 65

Query: 67 VGDLSDRLSELLASTDPESAQAAIIRTLL 96
            DLSDRL++LL S DP S QAA+IR+L+
Sbjct: 66 ADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of Sed0017506 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.7e-23
Identity = 63/95 (66.32%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MSGR SRSR+SS  SR  IS+DQI DLI KLQ L+PE+R++R S  VS ++VLQ+ CNYI
Sbjct: 1  MSGRRSRSRQSSGTSR--ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL 96
          RNL REV DLS+RLSELLA++D  +AQAA+IR+LL
Sbjct: 61 RNLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

[Close]

BLAST of Sed0017506 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.7e-21
Identity = 60/96 (62.50%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MS R SRSR+S     + I+D+QI+DL+SKLQ L+PE R  RS+  V  S+VLQE CNYI
Sbjct: 1  MSSRRSRSRQS---GSSRITDEQISDLVSKLQDLLPEAR-LRSNDRVPSSRVLQETCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM 97
          R+L +EV DLS+RLSELLA++D  SAQAAIIR+LLM
Sbjct: 61 RSLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Sed0017506 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.7e-21
Identity = 60/96 (62.50%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MS R SRSR+S     + I+D+QI+DL+SKLQ L+PE R  RS+  V  S+VLQE CNYI
Sbjct: 1  MSSRRSRSRQS---GSSRITDEQISDLVSKLQDLLPEAR-LRSNDRVPSSRVLQETCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM 97
          R+L +EV DLS+RLSELLA++D  SAQAAIIR+LLM
Sbjct: 61 RSLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Sed0017506 vs. ExPASy TrEMBL
Match: A0A0A0KQJ7 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G604940 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.7e-33
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MSGR+SRSRRS VGSRN ISD+QIADLISKLQ LIPEIRN RSSS VS SKVLQE CNYI
Sbjct: 1  MSGRSSRSRRSGVGSRN-ISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM 97
          R+LQREV DLSDRLSELLASTDPESAQAAIIR+LLM
Sbjct: 61 RSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0017506 vs. ExPASy TrEMBL
Match: A0A1S3BFH5 (transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103489101 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.2e-32
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MSGR+SRSRRS VGSRN ISD+QIADLISKLQ LIPEIRN RSSS VS SKVLQE CNYI
Sbjct: 1  MSGRSSRSRRSGVGSRN-ISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM 97
          R+LQREV DLSDRLS+LLASTDPESAQAAIIR+LLM
Sbjct: 61 RSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0017506 vs. ExPASy TrEMBL
Match: A0A6J1G268 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 83/96 (86.46%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MS R+SRSRRSSV S N ISD+QIADLISKLQ LIPEIRNARSSS VS SKVLQE CNYI
Sbjct: 1  MSSRSSRSRRSSVPSSN-ISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM 97
          R+LQREVGDLSDRLSELL STDPESAQAAIIR+LLM
Sbjct: 61 RSLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0017506 vs. ExPASy TrEMBL
Match: A0A6J1DAM4 (transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.8e-31
Identity = 83/96 (86.46%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MS R+SRSRRS V SRN ISDDQIADLISKLQ LIPEIRNARSSS VS SKVLQE CNYI
Sbjct: 1  MSSRSSRSRRSPVPSRN-ISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM 97
          R+LQREV DLS+RLSELLASTDPESAQAAIIR+LLM
Sbjct: 61 RSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0017506 vs. ExPASy TrEMBL
Match: A0A6J1HXN1 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 7.0e-31
Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MS R+SRSRRSSV S N ISD+QIADLISKLQ LIPEIRNARSSS VS SKVLQE CNYI
Sbjct: 1  MSSRSSRSRRSSVPSSN-ISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM 97
          R+LQREV DLSDRLSELL STDPESAQAAIIR+LLM
Sbjct: 61 RSLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0017506 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-26
Identity = 69/95 (72.63%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MS R S   R S  SR  ISDDQI+DL+SKLQHLIPE+R  RS   VS SKVLQE CNYI
Sbjct: 1  MSSRRSSRSRQSGSSR--ISDDQISDLVSKLQHLIPELRRRRSDK-VSASKVLQETCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL 96
          RNL REV DLSDRLSELLASTD  SA+AAIIR+LL
Sbjct: 61 RNLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Sed0017506 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 108.6 bits (270), Expect = 2.8e-24
Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 7  RSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQRE 66
          RSR++S  SR  ISDDQI DLISKL+  IPEIR  R S+TVS SKVLQE CNYIRNL +E
Sbjct: 6  RSRQASSSSR--ISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKE 65

Query: 67 VGDLSDRLSELLASTDPESAQAAIIRTLL 96
            DLSDRL++LL S DP S QAA+IR+L+
Sbjct: 66 ADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of Sed0017506 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 107.8 bits (268), Expect = 4.8e-24
Identity = 63/95 (66.32%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYI 60
          MSGR SRSR+SS  SR  IS+DQI DLI KLQ L+PE+R++R S  VS ++VLQ+ CNYI
Sbjct: 1  MSGRRSRSRQSSGTSR--ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYI 60

Query: 61 RNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL 96
          RNL REV DLS+RLSELLA++D  +AQAA+IR+LL
Sbjct: 61 RNLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

[Close]

BLAST of Sed0017506 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-22
Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 5  NSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQ 64
          N RSR++S  SR  ISDDQ+ DL+SKL+  +PEI   R S  VS SKVLQE CNYIR L 
Sbjct: 3  NRRSRQTSNASR--ISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLH 62

Query: 65 REVGDLSDRLSELLASTDPESAQAAIIRTLLM 97
          REV +LSDRLS+LL S D +S +AA+IR+LLM
Sbjct: 63 REVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Sed0017506 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-21
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 5  NSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQ 64
          N RSR+SS   R  ISD+Q+ DL+SKL+ ++PEI   R S   S SKVLQE CNYIRNL 
Sbjct: 3  NRRSRQSSSAPR--ISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLN 62

Query: 65 REVGDLSDRLSELLASTDPESAQAAIIRTLLM 97
          REV +LS+RLS+LL S D +S +AA+IR+LLM
Sbjct: 63 REVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

The following BLAST results are available for this feature:

BLAST of Sed0017506 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135185.1	2.0e-32	87.50	transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa...	[more]
XP_008446331.1	4.5e-32	86.46	PREDICTED: transcription factor PRE6-like [Cucumis melo]	[more]
XP_038893351.1	5.8e-32	87.50	transcription factor PRE6-like [Benincasa hispida]	[more]
XP_022945906.1	2.9e-31	86.46	transcription factor PRE6-like [Cucurbita moschata] >XP_023541313.1 transcriptio...	[more]
XP_022151230.1	3.8e-31	86.46	transcription factor PRE6-like [Momordica charantia]	[more]

BLAST of Sed0017506 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	1.9e-25	72.63	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9LXG5	3.9e-23	67.42	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]
Q9CA64	6.7e-23	66.32	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
B8APB5	3.7e-21	62.50	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	3.7e-21	62.50	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]

BLAST of Sed0017506 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQJ7	9.7e-33	87.50	Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G604940 PE=4 SV=1	[more]
A0A1S3BFH5	2.2e-32	86.46	transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103489101 PE=4 SV=1	[more]
A0A6J1G268	1.4e-31	86.46	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=...	[more]
A0A6J1DAM4	1.8e-31	86.46	transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE...	[more]
A0A6J1HXN1	7.0e-31	85.42	transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 ...	[more]

BLAST of Sed0017506 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	1.3e-26	72.63	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G15160.1	2.8e-24	67.42	BANQUO 2	[more]
AT1G74500.1	4.8e-24	66.32	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT3G28857.1	2.6e-22	61.96	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	1.7e-21	59.78	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..80
None	No IPR available	PANTHER	PTHR46446:SF11	TRANSCRIPTION FACTOR PRE6	coord: 1..96
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 22..64 e-value: 2.2E-4 score: 21.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 8..63 score: 8.765437
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 20..91 e-value: 1.7E-7 score: 33.3
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 22..83
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017506.1	Sed0017506.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity