Sed0017454 (gene) Chayote v1

Overview


Name	Sed0017454
Type	gene
Organism	Sechium edule (Chayote v1)
Description	30S ribosomal protein S18, chloroplastic
Location	Contig00297: 126793 .. 127098 (-)
RNA-Seq Expression	Sed0017454
Synteny	Sed0017454

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAATCCAAGCGACTCCTTCTTAAATCCAAACGATCTTTTCGTAAGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGGGAGTCGACCGCTAGAACTATTGGTCTTAGAACCAGGAATAAATAG

mRNA sequence

ATGGATAAATCCAAGCGACTCCTTCTTAAATCCAAACGATCTTTTCGTAAGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGGGAGTCGACCGCTAGAACTATTGGTCTTAGAACCAGGAATAAATAG

Coding sequence (CDS)

ATGGATAAATCCAAGCGACTCCTTCTTAAATCCAAACGATCTTTTCGTAAGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGGGAGTCGACCGCTAGAACTATTGGTCTTAGAACCAGGAATAAATAG

Protein sequence

MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK

Homology

[Close]

BLAST of Sed0017454 vs. NCBI nr
Match: YP_009945439.1 (ribosomal protein S18 [Sechium edule] >QIT04155.1 ribosomal protein S18 [Sechium edule] >QOE55969.1 ribosomal protein S18 [Sechium edule])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 101

[Close]

BLAST of Sed0017454 vs. NCBI nr
Match: YP_009317408.1 (ribosomal protein S18 [Coccinia grandis] >YP_009525208.1 ribosomal protein S18 [Hodgsonia macrocarpa] >YP_009560857.1 ribosomal protein S18 [Trichosanthes kirilowii] >YP_009751675.1 ribosomal protein S18 [Hodgsonia heteroclita] >YP_009751928.1 ribosomal protein S18 [Cyclanthera pedata] >YP_009752265.1 ribosomal protein S18 [Trichosanthes baviensis] >YP_009752434.1 ribosomal protein S18 [Trichosanthes tricuspidata] >YP_009752518.1 ribosomal protein S18 [Trichosanthes tubiflora] >YP_009752603.1 ribosomal protein S18 [Trichosanthes homophylla] >YP_009753196.1 ribosomal protein S18 [Trichosanthes truncata] >YP_009753642.1 ribosomal protein S18 [Trichosanthes wallichiana] >YP_009753727.1 ribosomal protein S18 [Trichosanthes nervifolia] >YP_009753811.1 ribosomal protein S18 [Trichosanthes pilosa] >QJD26493.1 ribosomal protein S18 [Trichosanthes kirilowii var. japonica] >QJD26667.1 ribosomal protein S18 [Trichosanthes rosthornii] >AOX48766.1 ribosomal protein S18 [Coccinia grandis] >AOX48851.1 ribosomal protein S18 [Coccinia grandis] >AXR94577.1 ribosomal protein S18 [Hodgsonia macrocarpa])

HSP 1 Score: 184.1 bits (466), Expect = 5.9e-43
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFER ESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

[Close]

BLAST of Sed0017454 vs. NCBI nr
Match: YP_009456168.1 (ribosomal protein S18 [Lagenaria siceraria] >YP_009674413.1 ribosomal protein S18 [Siraitia grosvenorii] >YP_009738223.1 ribosomal protein S18 [Siraitia siamensis] >YP_009751844.1 ribosomal protein S18 [Indofevillea khasiana] >YP_009752097.1 ribosomal protein S18 [Dendrosicyos socotranus] >YP_009752688.1 ribosomal protein S18 [Ampelosycios humblotii] >YP_009752942.1 ribosomal protein S18 [Momordica sessilifolia] >YP_009753111.1 ribosomal protein S18 [Corallocarpus boehmii] >YP_009753280.1 ribosomal protein S18 [Nothoalsomitra suberosa] >YP_010131116.1 ribosomal protein S18 [Benincasa hispida] >QIT04072.1 ribosomal protein S18 [Luffa aegyptiaca] >QKX48495.1 ribosomal protein S18 [Luffa acutangula] >QNM38553.1 ribosomal protein S18 [Lagenaria siceraria var. microcarpa] >AHM88716.1 ribosomal protein S18 [Lagenaria siceraria] >AHM88775.1 ribosomal protein S18 [Lagenaria siceraria])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFER ESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

[Close]

BLAST of Sed0017454 vs. NCBI nr
Match: YP_009753896.1 (ribosomal protein S18 [Trichosanthes lobata] >QIT05844.1 ribosomal protein S18 [Trichosanthes lobata])

HSP 1 Score: 182.6 bits (462), Expect = 1.7e-42
Identity = 99/101 (98.02%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFER EST RTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 101

[Close]

BLAST of Sed0017454 vs. NCBI nr
Match: QJR52978.1 (ribosomal protein S18 [Herpetospermum pedunculosum])

HSP 1 Score: 182.6 bits (462), Expect = 1.7e-42
Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRR+NRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRINRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFER ESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

[Close]

BLAST of Sed0017454 vs. ExPASy Swiss-Prot
Match: A0ZZ57 (30S ribosomal protein S18, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps18 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-43
Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRL LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFER EST RT  LRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTTALRTRNK 101

[Close]

BLAST of Sed0017454 vs. ExPASy Swiss-Prot
Match: Q0ZIZ8 (30S ribosomal protein S18, chloroplastic OS=Vitis vinifera OX=29760 GN=rps18 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 6.2e-43
Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKR  LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRPFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILS LPFLNNEKQFER ESTART GLRTRNK
Sbjct: 61  LITIAIKQARILSSLPFLNNEKQFERTESTARTTGLRTRNK 101

[Close]

BLAST of Sed0017454 vs. ExPASy Swiss-Prot
Match: Q0G9U0 (30S ribosomal protein S18, chloroplastic OS=Daucus carota OX=4039 GN=rps18 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.4e-42
Identity = 94/101 (93.07%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKR  LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRPFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFER EST RT GLR RNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERTESTTRTAGLRARNK 101

[Close]

BLAST of Sed0017454 vs. ExPASy Swiss-Prot
Match: Q2L928 (30S ribosomal protein S18, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps18 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.4e-42
Identity = 94/101 (93.07%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRL LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILS LPFLNNEKQFER EST RT  LRTRNK
Sbjct: 61  LITIAIKQARILSSLPFLNNEKQFERSESTTRTTALRTRNK 101

[Close]

BLAST of Sed0017454 vs. ExPASy Swiss-Prot
Match: B1A957 (30S ribosomal protein S18, chloroplastic OS=Carica papaya OX=3649 GN=rps18 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.3e-42
Identity = 93/101 (92.08%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRL  KSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILS LPFLNNEKQFER EST +T GLRTRNK
Sbjct: 61  LITIAIKQARILSSLPFLNNEKQFERSESTTKTTGLRTRNK 101

[Close]

BLAST of Sed0017454 vs. ExPASy TrEMBL
Match: A0A6H0EQL7 (30S ribosomal protein S18, chloroplastic OS=Sechium edule OX=184140 GN=rps18 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.8e-44
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 101

[Close]

BLAST of Sed0017454 vs. ExPASy TrEMBL
Match: A0A410HFA4 (30S ribosomal protein S18, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rps18 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.9e-43
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFER ESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

[Close]

BLAST of Sed0017454 vs. ExPASy TrEMBL
Match: A0A6M3RTS7 (30S ribosomal protein S18, chloroplastic OS=Trichosanthes kirilowii var. japonica OX=61011 GN=rps18 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.9e-43
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFER ESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

[Close]

BLAST of Sed0017454 vs. ExPASy TrEMBL
Match: A0A2Z2CGJ8 (30S ribosomal protein S18, chloroplastic OS=Coccinia grandis OX=387127 GN=rps18 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.9e-43
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFER ESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

[Close]

BLAST of Sed0017454 vs. ExPASy TrEMBL
Match: A0A346QNH8 (30S ribosomal protein S18, chloroplastic OS=Hodgsonia macrocarpa OX=2184935 GN=rps18 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.9e-43
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFER ESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

[Close]

BLAST of Sed0017454 vs. TAIR 10
Match: ATCG00650.1 (ribosomal protein S18 )

HSP 1 Score: 166.8 bits (421), Expect = 9.1e-42
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           M+KSKRL  KSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNR+TLKQQR
Sbjct: 1   MNKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRVTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNN+KQFER EST RT  LRTR K
Sbjct: 61  LITIAIKQARILSLLPFLNNQKQFERSESTPRTTSLRTRKK 101

The following BLAST results are available for this feature:

BLAST of Sed0017454 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009945439.1	1.2e-43	100.00	ribosomal protein S18 [Sechium edule] >QIT04155.1 ribosomal protein S18 [Sechium...	[more]
YP_009317408.1	5.9e-43	99.01	ribosomal protein S18 [Coccinia grandis] >YP_009525208.1 ribosomal protein S18 [...	[more]
YP_009456168.1	1.3e-42	98.02	ribosomal protein S18 [Lagenaria siceraria] >YP_009674413.1 ribosomal protein S1...	[more]
YP_009753896.1	1.7e-42	98.02	ribosomal protein S18 [Trichosanthes lobata] >QIT05844.1 ribosomal protein S18 [...	[more]
QJR52978.1	1.7e-42	97.03	ribosomal protein S18 [Herpetospermum pedunculosum]	[more]

BLAST of Sed0017454 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0ZZ57	2.8e-43	94.06	30S ribosomal protein S18, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1...	[more]
Q0ZIZ8	6.2e-43	94.06	30S ribosomal protein S18, chloroplastic OS=Vitis vinifera OX=29760 GN=rps18 PE=...	[more]
Q0G9U0	1.4e-42	93.07	30S ribosomal protein S18, chloroplastic OS=Daucus carota OX=4039 GN=rps18 PE=3 ...	[more]
Q2L928	1.4e-42	93.07	30S ribosomal protein S18, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps18 ...	[more]
B1A957	2.3e-42	92.08	30S ribosomal protein S18, chloroplastic OS=Carica papaya OX=3649 GN=rps18 PE=3 ...	[more]

BLAST of Sed0017454 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EQL7	5.8e-44	100.00	30S ribosomal protein S18, chloroplastic OS=Sechium edule OX=184140 GN=rps18 PE=...	[more]
A0A410HFA4	2.9e-43	99.01	30S ribosomal protein S18, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=r...	[more]
A0A6M3RTS7	2.9e-43	99.01	30S ribosomal protein S18, chloroplastic OS=Trichosanthes kirilowii var. japonic...	[more]
A0A2Z2CGJ8	2.9e-43	99.01	30S ribosomal protein S18, chloroplastic OS=Coccinia grandis OX=387127 GN=rps18 ...	[more]
A0A346QNH8	2.9e-43	99.01	30S ribosomal protein S18, chloroplastic OS=Hodgsonia macrocarpa OX=2184935 GN=r...	[more]

BLAST of Sed0017454 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00650.1	9.1e-42	89.11	ribosomal protein S18	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001648	Ribosomal protein S18	PRINTS	PR00974	RIBOSOMALS18	coord: 35..45 score: 60.88 coord: 67..77 score: 71.07 coord: 53..67 score: 54.34 coord: 45..52 score: 65.53
IPR001648	Ribosomal protein S18	PFAM	PF01084	Ribosomal_S18	coord: 27..75 e-value: 5.0E-19 score: 68.2
IPR001648	Ribosomal protein S18	TIGRFAM	TIGR00165	TIGR00165	coord: 22..79 e-value: 2.3E-17 score: 61.0
IPR001648	Ribosomal protein S18	PANTHER	PTHR13479	30S RIBOSOMAL PROTEIN S18	coord: 2..100
IPR001648	Ribosomal protein S18	HAMAP	MF_00270	Ribosomal_S18	coord: 12..80 score: 19.342112
IPR036870	Ribosomal protein S18 superfamily	GENE3D	4.10.640.10	Ribosomal protein S18	coord: 21..84 e-value: 3.0E-28 score: 99.4
IPR036870	Ribosomal protein S18 superfamily	SUPERFAMILY	46911	Ribosomal protein S18	coord: 15..81
None	No IPR available	PANTHER	PTHR13479:SF61	30S RIBOSOMAL PROTEIN S18, CHLOROPLASTIC	coord: 2..100
IPR018275	Ribosomal protein S18, conserved site	PROSITE	PS00057	RIBOSOMAL_S18	coord: 28..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017454.1	Sed0017454.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome