Sed0017444 (gene) Chayote v1

Overview
NameSed0017444
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG02: 32819850 .. 32821414 (+)
RNA-Seq ExpressionSed0017444
SyntenySed0017444
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGGGCGACACCTGCCTTTGATGATTCACAAAATCTTACTTTTGTTCCTGCTACACACCTTCTAGTGGTGATACATTAGGTAATTTTTATCTTGTAATGAAATAGAAATGTCCAATAAAAAATTTAATATATACTAACATTTCTATTTATTATGTAGTAGCAATCGAGCTTATCGATGCTATAACACAGGAAAAATTTGGGCAAGCGCGTGACCAATCACATGAAGGTAAGTGTGGAGTTTAGTGAGGAATACGAGAAGCCCGTATGCGAGGATGTCATTACACTAAGCTATCAAATCAGCGTGTTGGTTCGAAAAACATTTCCACTTCATATTCATGGGTGGAAACAGATTCCTAAGGAGACGAAAGATCTCATTACGTCGTCGTTGTTGGTTAGTTGATTCACTTTTTAAAACTTAAATTTAATTATTTTTACATAGTCTTATATACGATAAATTTTTTCACTTTGTAGACACATTTTACTTTGGATTTAAAAGATCCAACTATTGTTAGGACAATGGAGAACACTATGAAAGTATTCTTCAAGGAGCATAGATATGAGATGCACAAGCATTATTGGTAAGAATTATACATAAACATTATTGTTACATATTTGTTGATTATTATTGATGTTAATATTGTTTTTCCAACAGCTTGATGCCCACTGAGCTTAGATAAGTGACTTCGAGTAGGAGAGTGACTAAGCTCGAAGATTGGGAATATCTATGCAACTATTAAGAATCACCCAAATGTCTGGAAAAGAGTAAGAAAGTGAAAGAGAGTTAAGCGACGCTCCAATACCACCACCGAGCAGGCAATAAGTCGTTCTTGTACATTAATGAGAAGGTCAGTAATAGTCTTGTCCATTGTGTTATTAAATGATTTTAATGCATATTGTTTTTCCTGAAGGATTGTAATAAATATTCCTTTTTTAACTATAGAAAAAGAAAGAAACGGGTATTCAACTAGACGCGGTAGAACTGTGGCATGATGTTCGCTACCATCCAGTGAAGGAATGGCTGGGTCCTAAAGCCGTTGAGCTTCACGTGAGTATTTTTTTTATAATAATTCAATGTTTTTTTTTTTGTATTTCATACATTGTTAAAGAATAATAAATGTATTTCATGTATTTGCAGGGAAAGATGATAGCCCTTCAAGAAGCATCAACTCCTGAACGGTCCAAACCCTTGACTCAGTCTGAAATTCTTGCACTTGTGTTAGGGAATCGGTCTAACAAAGTTAAGGGTATGGGTTATCTCCCCTATGGAAACAGATCAAAAGGTATCTAATTAACTAGTGGTAATCGTGATCGTGAAAGACTGTGGCATCATTGAGGATGGAAAGTATAGCAATACAAGATAGTTTCAACAAGTATGCAGAACAAAAAGACGAGAAAGATCGGGCCCTAGAGGGGAGAGAAAGGGAGAGGGAAGAGAAAGCAAGGGAAAGAGAAAAGGAGAGAGATGAGAGAGAAAGTGCAAGAGAAAAGGAGAGAGAAGATAGAGAATTGGCGAGAGAAAGGGCGCAACAAAAGAAAGTAGAGTGCGAGAGCAAGAAATGA

mRNA sequence

ATGGATAGGGCGACACCTGCCTTTGATGATTCACAAAATCTTACTTTTGTTCCTGCTACACACCTTCTAGTGAAAAAGAAAGAAACGGGTATTCAACTAGACGCGGTAGAACTGTGGCATGATGTTCGCTACCATCCAGTGAAGGAATGGCTGGGTCCTAAAGCCGTTGAGCTTCACGGAAAGATGATAGCCCTTCAAGAAGCATCAACTCCTGAACGGTCCAAACCCTTGACTCAGTCTGAAATTCTTGCACTTGTGTTAGGGAATCGGTCTAACAAAGTTAAGGGTATGGGTTATCTCCCCTATGGAAACAGATCAAAAGAACAAAAAGACGAGAAAGATCGGGCCCTAGAGGGGAGAGAAAGGGAGAGGGAAGAGAAAGCAAGGGAAAGAGAAAAGGAGAGAGATGAGAGAGAAAGTGCAAGAGAAAAGGAGAGAGAAGATAGAGAATTGGCGAGAGAAAGGGCGCAACAAAAGAAAGTAGAGTGCGAGAGCAAGAAATGA

Coding sequence (CDS)

ATGGATAGGGCGACACCTGCCTTTGATGATTCACAAAATCTTACTTTTGTTCCTGCTACACACCTTCTAGTGAAAAAGAAAGAAACGGGTATTCAACTAGACGCGGTAGAACTGTGGCATGATGTTCGCTACCATCCAGTGAAGGAATGGCTGGGTCCTAAAGCCGTTGAGCTTCACGGAAAGATGATAGCCCTTCAAGAAGCATCAACTCCTGAACGGTCCAAACCCTTGACTCAGTCTGAAATTCTTGCACTTGTGTTAGGGAATCGGTCTAACAAAGTTAAGGGTATGGGTTATCTCCCCTATGGAAACAGATCAAAAGAACAAAAAGACGAGAAAGATCGGGCCCTAGAGGGGAGAGAAAGGGAGAGGGAAGAGAAAGCAAGGGAAAGAGAAAAGGAGAGAGATGAGAGAGAAAGTGCAAGAGAAAAGGAGAGAGAAGATAGAGAATTGGCGAGAGAAAGGGCGCAACAAAAGAAAGTAGAGTGCGAGAGCAAGAAATGA

Protein sequence

MDRATPAFDDSQNLTFVPATHLLVKKKETGIQLDAVELWHDVRYHPVKEWLGPKAVELHGKMIALQEASTPERSKPLTQSEILALVLGNRSNKVKGMGYLPYGNRSKEQKDEKDRALEGREREREEKAREREKERDERESAREKEREDRELARERAQQKKVECESKK
Homology
[Close]
BLAST of Sed0017444 vs. NCBI nr
Match: KAA8538994.1 (hypothetical protein F0562_025686 [Nyssa sinensis])

HSP 1 Score: 58.5 bits (140), Expect = 6.2e-05
Identity = 31/87 (35.63%), Postives = 47/87 (54.02%), Query Frame = 0 

Query: 15  TFVPATHLLVKKK--ETGIQLDAVELWHDVRYHPVKEWLGPKAVELHGKMIALQEASTPE 74
           +FV   H +  ++  ET  Q   +++W    Y+PVK W    A E++ +MIALQ   TPE
Sbjct: 25  SFVRFRHEMFSQRDSETQQQPSRIQVWQKTHYNPVKGWSCSLAKEMYDEMIALQSQPTPE 84

Query: 75  RSKPLTQSEILALVLGNRSNKVKGMGY 100
            S PL   +I   VLG     ++G+G+
Sbjct: 85  GSTPLMDDDICDRVLGTGRGYIRGLGH 111

[Close]
BLAST of Sed0017444 vs. ExPASy TrEMBL
Match: A0A5B6ZBJ5 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_010732 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-04
Identity = 50/146 (34.25%), Postives = 73/146 (50.00%), Query Frame = 0 

Query: 24  VKKKETGIQLDAVELWHDVRYHPVKEWLGPKAVELHGKMIALQEASTPERSKPLTQSEIL 83
           ++ KET +  D +++WH   Y P K W      E + +M+A Q   TPE SKPLT  EI 
Sbjct: 145 MRDKETNVPPDRIQVWHQTHYKPDKGWANSFVEEKYNEMLAFQSEPTPEGSKPLTVDEIC 204

Query: 84  ALVLGNRSNKVKGMGY--LPYGNRSKEQKDEKDRALEGREREREEKAREREKERDERESA 143
             VLG R+  + GMG+   P  + S        R LE  ER R E A  R +E D R S 
Sbjct: 205 NRVLGTRAGYICGMGHGMRPESSSSSVHTQCNTRLLE--ERRRAEDAARRAEELDTRLSI 264

Query: 144 REKEREDRELARERAQQKKVECESKK 168
              +++D +  ++  Q  K + ++ K
Sbjct: 265 ---QQQDLQTTQQELQMTKQDLQATK 285

The following BLAST results are available for this feature:
BLAST of Sed0017444 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA8538994.16.2e-0535.63hypothetical protein F0562_025686 [Nyssa sinensis][more]
BLAST of Sed0017444 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0017444 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5B6ZBJ57.4e-0434.25Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_010732 PE=4 SV=1[more]
BLAST of Sed0017444 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 106..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0017444.1Sed0017444.1mRNA