Sed0017436 (gene) Chayote v1

Overview


Name	Sed0017436
Type	gene
Organism	Sechium edule (Chayote v1)
Description	agamous-like MADS-box protein AGL29
Location	LG08: 38899512 .. 38900520 (+)
RNA-Seq Expression	Sed0017436
Synteny	Sed0017436

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGATCTAGTCTAAAGTCTTGCACCTACAAATATTTGATTTCACCAAATTTTCTATATAATATGAGAATAAAGAGACATTTTTGCTTGAACATAATCGTAATCTCGAATTTGTAACAACGAGTCAAATTTAGAAAGAGAGTTAAAAGCTTTCCATGTTAGCAAACAAAATGAACAGAACAATGTGTATAAAACAGACACCAAAATCCGATATTAGAAACATTGAAGAAAAACCCTCTGGTTTTCGATCCATTTCAATCCAATCACAAATCTCCTCAGAAAAATCAACCTCCGATCGTTCAAATTTACACAGAAATCAATCGATTGAAATTCCAATCACAAATCTCCACAGAAATCAACTTCCGATCGTTCAAATTTACACAAGAAACACAGCAATTATACGACCAGTCGCCAGATCTATGGGACGGCGAAAAATCGAGATGAAAATGGTGAAGGATAGAGGATCCAGACAAGTTACCTTTTCGAAGCGCCGAAACGGCCTGTTCAAGAAAGCGAACGATCTCGCAACTCTCTGCGGTCTAGAGGTCGCCATCGTCGTCTTCTCTCCCGGCGGCAAGGCGTTCTCGTTCGGCAATCCGAATGTTGATGGCGTCGTCGATCGGTACCTGAATCGCGAATCGGAGCCGATTCCGGCGGTGAGAGAGATCGGAGTCTTGGAGAAGGAGAATGAGGAACTTGTAGATCTGACGAAGCGATTGCAATTGGAGAAGAAGAAGGGAGAAATGTTGGAGAAGGAGATGAAATCGATTGAAATTGAGGATCTGGATTTGGATGCGCTTTTGAACTTGAAGGAATCTTTGGAAATTCTGCGAGAGAATGTGAAAATCAAAGAGAGTGAATTGGAGGCGTCGTCTTCGTTGCTGTTGCTCGCTAATGAACCACTCGTGGAAAGCCGATGAGTCTGATGAATTTTAGATTTAAAATTACTAAAAAATATTTGTTTTTTTTTTCGAAGAATTTGGTATATTTTCAATTGAGTGGAAAAATGGAG

mRNA sequence

CGATCTAGTCTAAAGTCTTGCACCTACAAATATTTGATTTCACCAAATTTTCTATATAATATGAGAATAAAGAGACATTTTTGCTTGAACATAATCGTAATCTCGAATTTGTAACAACGAGTCAAATTTAGAAAGAGAGTTAAAAGCTTTCCATGTTAGCAAACAAAATGAACAGAACAATGTGTATAAAACAGACACCAAAATCCGATATTAGAAACATTGAAGAAAAACCCTCTGGTTTTCGATCCATTTCAATCCAATCACAAATCTCCTCAGAAAAATCAACCTCCGATCGTTCAAATTTACACAGAAATCAATCGATTGAAATTCCAATCACAAATCTCCACAGAAATCAACTTCCGATCGTTCAAATTTACACAAGAAACACAGCAATTATACGACCAGTCGCCAGATCTATGGGACGGCGAAAAATCGAGATGAAAATGGTGAAGGATAGAGGATCCAGACAAGTTACCTTTTCGAAGCGCCGAAACGGCCTGTTCAAGAAAGCGAACGATCTCGCAACTCTCTGCGGTCTAGAGGTCGCCATCGTCGTCTTCTCTCCCGGCGGCAAGGCGTTCTCGTTCGGCAATCCGAATGTTGATGGCGTCGTCGATCGGTACCTGAATCGCGAATCGGAGCCGATTCCGGCGGTGAGAGAGATCGGAGTCTTGGAGAAGGAGAATGAGGAACTTGTAGATCTGACGAAGCGATTGCAATTGGAGAAGAAGAAGGGAGAAATGTTGGAGAAGGAGATGAAATCGATTGAAATTGAGGATCTGGATTTGGATGCGCTTTTGAACTTGAAGGAATCTTTGGAAATTCTGCGAGAGAATGTGAAAATCAAAGAGAGTGAATTGGAGGCGTCGTCTTCGTTGCTGTTGCTCGCTAATGAACCACTCGTGGAAAGCCGATGAGTCTGATGAATTTTAGATTTAAAATTACTAAAAAATATTTGTTTTTTTTTTCGAAGAATTTGGTATATTTTCAATTGAGTGGAAAAATGGAG

Coding sequence (CDS)

ATGTTAGCAAACAAAATGAACAGAACAATGTGTATAAAACAGACACCAAAATCCGATATTAGAAACATTGAAGAAAAACCCTCTGGTTTTCGATCCATTTCAATCCAATCACAAATCTCCTCAGAAAAATCAACCTCCGATCGTTCAAATTTACACAGAAATCAATCGATTGAAATTCCAATCACAAATCTCCACAGAAATCAACTTCCGATCGTTCAAATTTACACAAGAAACACAGCAATTATACGACCAGTCGCCAGATCTATGGGACGGCGAAAAATCGAGATGAAAATGGTGAAGGATAGAGGATCCAGACAAGTTACCTTTTCGAAGCGCCGAAACGGCCTGTTCAAGAAAGCGAACGATCTCGCAACTCTCTGCGGTCTAGAGGTCGCCATCGTCGTCTTCTCTCCCGGCGGCAAGGCGTTCTCGTTCGGCAATCCGAATGTTGATGGCGTCGTCGATCGGTACCTGAATCGCGAATCGGAGCCGATTCCGGCGGTGAGAGAGATCGGAGTCTTGGAGAAGGAGAATGAGGAACTTGTAGATCTGACGAAGCGATTGCAATTGGAGAAGAAGAAGGGAGAAATGTTGGAGAAGGAGATGAAATCGATTGAAATTGAGGATCTGGATTTGGATGCGCTTTTGAACTTGAAGGAATCTTTGGAAATTCTGCGAGAGAATGTGAAAATCAAAGAGAGTGAATTGGAGGCGTCGTCTTCGTTGCTGTTGCTCGCTAATGAACCACTCGTGGAAAGCCGATGA

Protein sequence

MLANKMNRTMCIKQTPKSDIRNIEEKPSGFRSISIQSQISSEKSTSDRSNLHRNQSIEIPITNLHRNQLPIVQIYTRNTAIIRPVARSMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNPNVDGVVDRYLNRESEPIPAVREIGVLEKENEELVDLTKRLQLEKKKGEMLEKEMKSIEIEDLDLDALLNLKESLEILRENVKIKESELEASSSLLLLANEPLVESR

Homology

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BLAST of Sed0017436 vs. NCBI nr
Match: XP_023519112.1 (agamous-like MADS-box protein AGL29 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.8 bits (660), Expect = 4.8e-65
Identity = 142/169 (84.02%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLE+AI+VFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNP 60

Query: 149 NVDGVVDRYLNRESEPIPAVREIGVLEKENEELVDLTKRLQLEKKKGEMLEKEMK----S 208
           NV+ VVDRYLNR+SEPIP   E G+ EKENEEL+DL K+LQLEKKKGEMLEKEMK    S
Sbjct: 61  NVEDVVDRYLNRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRGES 120

Query: 209 IEIEDLDLDALLNLKESLEILRENVKIKESELEASSSLLLLANEPLVES 254
           I+IEDLDLD LL LKESLE LR+NV++KESELEASSSLLLLANEP+VE+
Sbjct: 121 IKIEDLDLDELLKLKESLESLRQNVRMKESELEASSSLLLLANEPVVEA 168

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BLAST of Sed0017436 vs. NCBI nr
Match: KAG6583909.1 (Agamous-like MADS-box protein AGL29, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.5 bits (659), Expect = 6.2e-65
Identity = 142/169 (84.02%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLE+AI+VFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNP 60

Query: 149 NVDGVVDRYLNRESEPIPAVREIGVLEKENEELVDLTKRLQLEKKKGEMLEKEMK----S 208
           NV+ VVDRYLNR+SEPIP   E G+ EKENEEL+DL K+LQLEKKKGEMLEKEMK    S
Sbjct: 61  NVEDVVDRYLNRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRGES 120

Query: 209 IEIEDLDLDALLNLKESLEILRENVKIKESELEASSSLLLLANEPLVES 254
           I+IEDLDLD LL LKESLE LR+NV++KESELEASSSLLLLANEP+VE+
Sbjct: 121 IKIEDLDLDELLKLKESLERLRQNVRMKESELEASSSLLLLANEPVVEA 168

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BLAST of Sed0017436 vs. NCBI nr
Match: XP_022927257.1 (agamous-like MADS-box protein AGL29 [Cucurbita moschata])

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-64
Identity = 142/169 (84.02%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLE+AI+VFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNP 60

Query: 149 NVDGVVDRYLNRESEPIPAVREIGVLEKENEELVDLTKRLQLEKKKGEMLEKEMK----S 208
           NV+ VVDRYLNR+SEPIP   E G+ EKENEEL+DL K+LQLEKKKGEMLEKEMK    S
Sbjct: 61  NVEDVVDRYLNRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRGES 120

Query: 209 IEIEDLDLDALLNLKESLEILRENVKIKESELEASSSLLLLANEPLVES 254
           I+IEDLDLD LL LKESLE LR+NV +KESELEASSSLLLLANEP+VE+
Sbjct: 121 IKIEDLDLDELLKLKESLERLRQNVSMKESELEASSSLLLLANEPVVEA 168

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BLAST of Sed0017436 vs. NCBI nr
Match: XP_023001476.1 (agamous-like MADS-box protein AGL29 [Cucurbita maxima])

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-64
Identity = 142/169 (84.02%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLE+AI+VFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNP 60

Query: 149 NVDGVVDRYLNRESEPIPAVREIGVLEKENEELVDLTKRLQLEKKKGEMLEKEMK----S 208
           NV+ VVDRYLNR+SEPIP   E G+ EKENEEL+DL K+LQLEKKKGEMLEKEMK    S
Sbjct: 61  NVEEVVDRYLNRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRGES 120

Query: 209 IEIEDLDLDALLNLKESLEILRENVKIKESELEASSSLLLLANEPLVES 254
           I+IEDLDLD LL LKESLE LR+NV++KESELEASSSLLLLANEP+VE+
Sbjct: 121 IKIEDLDLDELLKLKESLERLRKNVRMKESELEASSSLLLLANEPVVEA 168

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BLAST of Sed0017436 vs. NCBI nr
Match: KAG7019526.1 (Agamous-like MADS-box protein AGL29, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-63
Identity = 139/169 (82.25%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLE+AI+VFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNP 60

Query: 149 NVDGVVDRYLNRESEPIPAVREIGVLEKENEELVDLTKRLQLEKKKGEMLEKEMK----S 208
           NV+ VVDRYLNR+SEPIP   E G+ EKENEEL+DL K+LQLEKKKGEMLEKEMK    S
Sbjct: 61  NVEDVVDRYLNRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRGES 120

Query: 209 IEIEDLDLDALLNLKESLEILRENVKIKESELEASSSLLLLANEPLVES 254
           I+IEDLDL+ LL L+ESLE LR+NV++KESELEASSSLLLLANEP++E+
Sbjct: 121 IKIEDLDLNELLKLRESLERLRKNVRMKESELEASSSLLLLANEPVMEA 168

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BLAST of Sed0017436 vs. ExPASy Swiss-Prot
Match: O64703 (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.7e-26
Identity = 73/172 (42.44%), Postives = 110/172 (63.95%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGRRKI+M+MV+D  +RQVTFSKRR GLFKKA++LATLC  E+ IVVFSPGGK FS+G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 149 NVDGVVDRYLNRESEPIPAVREIG-----VLEKENEELVDLTKRLQLEKKKGEMLEKEMK 208
           N+D V +R++    +      E        L++ +E L  L + ++ EK++GE  +++++
Sbjct: 61  NLDSVAERFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKLE 120

Query: 209 SI-------EIEDLDLDALLNLKESLEILRENVKIKESELEASSSLLLLANE 249
           S         IE L LD L   K+ L+ +   ++ + + L+ASS L+LL+ +
Sbjct: 121 SAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQASSCLMLLSRK 172

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BLAST of Sed0017436 vs. ExPASy Swiss-Prot
Match: Q9FKK2 (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.5e-25
Identity = 72/167 (43.11%), Postives = 102/167 (61.08%), Query Frame = 0


Query: 85  VARSMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFS 144
           V +S GR+KIEM  +K+  + QVTFSKRR+GLFKKA++L TLCG EVAIVVFSPG K FS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 145 FGNPNVDGVVDRYLNRESEP--------IPAVREIGVLEKENEELVDLTKRLQLEKKKGE 204
           FG+PNVD V+DR++N    P        +   R   +++  N  L  +  +L+ EKKK +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 205 MLEKEMKSIE---------IEDLDLDALLNLKESLEILRENVKIKES 235
            L+K  +  +         +E+L L  L   K +LE L++ V ++ S
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEAS 168

[Close]

BLAST of Sed0017436 vs. ExPASy Swiss-Prot
Match: Q4PSU4 (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.7e-21
Identity = 64/171 (37.43%), Postives = 103/171 (60.23%), Query Frame = 0


Query: 74  IYTRNTAIIRPVARSMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAI 133
           ++T+ T + +    S+GR+KI M  +K    RQVTFSKRR GLFKKA++L TLCG E+ I
Sbjct: 48  LHTKKTMMSKK-KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGI 107

Query: 134 VVFSPGGKAFSFGNPNVDGVVDRYLNRESEPIPAVREI----GVLEKENEELVDLTKRLQ 193
           +VFSP  K FSFG+P+V+ V+DRY++R +  +   +++        + N +L  +   ++
Sbjct: 108 IVFSPAKKPFSFGHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVE 167

Query: 194 LEKKKGEMLEKEMKSI-----------EIEDLDLDALLNLKESLEILRENV 230
            EKKKG+ +E+  K              +E++++  L  +K +LE LR+ V
Sbjct: 168 EEKKKGQAMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]

BLAST of Sed0017436 vs. ExPASy Swiss-Prot
Match: Q9LMM8 (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-16
Identity = 59/163 (36.20%), Postives = 98/163 (60.12%), Query Frame = 0


Query: 87  RSMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFG 146
           +++GRRKIE+  + +  + QVTFSKRR+GLFKK ++L TLC  E+AI+VFSP GKA+SFG
Sbjct: 4   KNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFG 63

Query: 147 NPNVDGVVDRYLNR----ESEPIPAVREIGVLEKENEELVDLTKRLQLEKK-KGEMLEKE 206
           +PNV+ ++D  L R     +      R    ++  NE L ++    + E++ K  +++ E
Sbjct: 64  HPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQNE 123

Query: 207 MKSIEIE--------DLDLDALLNLKESLEILRENVKIKESEL 237
            ++ + E        +L+L    ++K  LE L++ V  K ++L
Sbjct: 124 RENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL 166

[Close]

BLAST of Sed0017436 vs. ExPASy Swiss-Prot
Match: Q6Z6W2 (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS57 PE=1 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-15
Identity = 56/150 (37.33%), Postives = 86/150 (57.33%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGR KI ++ + +  SRQVTFSKRRNGL KKA +L+ LC  EV +VVFS  G+ + F + 
Sbjct: 1   MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSST 60

Query: 149 NVDGVVDRYLNRESEPI--PAVREIGVLEKENEELVDLTKRLQLEKKKGEMLEKEMKSIE 208
           N+  V+DRY N + E +   A  EI + ++E   L      LQ   K  +++ +E+  + 
Sbjct: 61  NMKTVIDRYTNAKEELLGGNATSEIKIWQREAASLRQQLHNLQESHK--QLMGEELSGLG 120

Query: 209 IEDLDLDALLNLKESLEILRENVKIKESEL 237
           + DL       L+  LEI   N+++++  L
Sbjct: 121 VRDLQ-----GLENRLEISLRNIRMRKDNL 143

[Close]

BLAST of Sed0017436 vs. ExPASy TrEMBL
Match: A0A6J1KIQ5 (agamous-like MADS-box protein AGL29 OS=Cucurbita maxima OX=3661 GN=LOC111495601 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 5.1e-65
Identity = 142/169 (84.02%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLE+AI+VFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNP 60

Query: 149 NVDGVVDRYLNRESEPIPAVREIGVLEKENEELVDLTKRLQLEKKKGEMLEKEMK----S 208
           NV+ VVDRYLNR+SEPIP   E G+ EKENEEL+DL K+LQLEKKKGEMLEKEMK    S
Sbjct: 61  NVEEVVDRYLNRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRGES 120

Query: 209 IEIEDLDLDALLNLKESLEILRENVKIKESELEASSSLLLLANEPLVES 254
           I+IEDLDLD LL LKESLE LR+NV++KESELEASSSLLLLANEP+VE+
Sbjct: 121 IKIEDLDLDELLKLKESLERLRKNVRMKESELEASSSLLLLANEPVVEA 168

[Close]

BLAST of Sed0017436 vs. ExPASy TrEMBL
Match: A0A6J1EGN3 (agamous-like MADS-box protein AGL29 OS=Cucurbita moschata OX=3662 GN=LOC111434156 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 5.1e-65
Identity = 142/169 (84.02%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLE+AI+VFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNP 60

Query: 149 NVDGVVDRYLNRESEPIPAVREIGVLEKENEELVDLTKRLQLEKKKGEMLEKEMK----S 208
           NV+ VVDRYLNR+SEPIP   E G+ EKENEEL+DL K+LQLEKKKGEMLEKEMK    S
Sbjct: 61  NVEDVVDRYLNRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRGES 120

Query: 209 IEIEDLDLDALLNLKESLEILRENVKIKESELEASSSLLLLANEPLVES 254
           I+IEDLDLD LL LKESLE LR+NV +KESELEASSSLLLLANEP+VE+
Sbjct: 121 IKIEDLDLDELLKLKESLERLRQNVSMKESELEASSSLLLLANEPVVEA 168

[Close]

BLAST of Sed0017436 vs. ExPASy TrEMBL
Match: A0A6J1CEW1 (agamous-like MADS-box protein AGL29 OS=Momordica charantia OX=3673 GN=LOC111010863 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-63
Identity = 137/169 (81.07%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGRRKIEMKMVKDR SRQVTFSKRRNGLFKKANDLATLCGLE+AIVVFSPGGKAFSFG+P
Sbjct: 1   MGRRKIEMKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHP 60

Query: 149 NVDGVVDRYLNRESEPIPAVREIGVLEKENEELVDLTKRLQLEKKKGEMLEKEMK----S 208
           NV+ V+DRYLN ESEPIP  RE G++EKENEEL+DL K+LQLEK++GE+LEKEMK    S
Sbjct: 61  NVEDVIDRYLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEES 120

Query: 209 IEIEDLDLDALLNLKESLEILRENVKIKESELEASSSLLLLANEPLVES 254
           I+IEDL+ D LL LKESLE LRENVKIK SELEASSSLLLLANEP++E+
Sbjct: 121 IKIEDLNFDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEA 169

[Close]

BLAST of Sed0017436 vs. ExPASy TrEMBL
Match: A0A5A7UFJ7 (Agamous-like MADS-box protein AGL29 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00320 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.1e-56
Identity = 132/166 (79.52%), Postives = 146/166 (87.95%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKA DLATLCGLE+AIVVFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60

Query: 149 NVDGVVDRYLNRE--SEPIPAVREIGVLEKENEELVDLTKRLQLEKKKGEMLEKEMKS-- 208
           NV+ VVDRYL+ E       AVRE G+LEKENEEL+DL K+LQ+EKKKGE++EKEMKS  
Sbjct: 61  NVEEVVDRYLSCEWKVNRNTAVRERGMLEKENEELLDLVKQLQMEKKKGEVMEKEMKSRG 120

Query: 209 --IEIEDLDLDALLNLKESLEILRENVKIKESELEASSSLLLLANE 249
             ++IEDLDL+ LL LKESLE LR+NVKI+ESELEAS SLLLLANE
Sbjct: 121 ELMKIEDLDLNELLKLKESLEKLRKNVKIEESELEASFSLLLLANE 166

[Close]

BLAST of Sed0017436 vs. ExPASy TrEMBL
Match: A0A1S3B9N7 (agamous-like MADS-box protein AGL29 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487550 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.1e-56
Identity = 132/166 (79.52%), Postives = 146/166 (87.95%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKA DLATLCGLE+AIVVFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60

Query: 149 NVDGVVDRYLNRE--SEPIPAVREIGVLEKENEELVDLTKRLQLEKKKGEMLEKEMKS-- 208
           NV+ VVDRYL+ E       AVRE G+LEKENEEL+DL K+LQ+EKKKGE++EKEMKS  
Sbjct: 61  NVEEVVDRYLSCEWKVNRNTAVRERGMLEKENEELLDLVKQLQMEKKKGEVMEKEMKSRG 120

Query: 209 --IEIEDLDLDALLNLKESLEILRENVKIKESELEASSSLLLLANE 249
             ++IEDLDL+ LL LKESLE LR+NVKI+ESELEAS SLLLLANE
Sbjct: 121 ELMKIEDLDLNELLKLKESLEKLRKNVKIEESELEASFSLLLLANE 166

[Close]

BLAST of Sed0017436 vs. TAIR 10
Match: AT2G34440.1 (AGAMOUS-like 29 )

HSP 1 Score: 119.0 bits (297), Expect = 5.5e-27
Identity = 73/172 (42.44%), Postives = 110/172 (63.95%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGRRKI+M+MV+D  +RQVTFSKRR GLFKKA++LATLC  E+ IVVFSPGGK FS+G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 149 NVDGVVDRYLNRESEPIPAVREIG-----VLEKENEELVDLTKRLQLEKKKGEMLEKEMK 208
           N+D V +R++    +      E        L++ +E L  L + ++ EK++GE  +++++
Sbjct: 61  NLDSVAERFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKLE 120

Query: 209 SI-------EIEDLDLDALLNLKESLEILRENVKIKESELEASSSLLLLANE 249
           S         IE L LD L   K+ L+ +   ++ + + L+ASS L+LL+ +
Sbjct: 121 SAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQASSCLMLLSRK 172

[Close]

BLAST of Sed0017436 vs. TAIR 10
Match: AT5G60440.1 (AGAMOUS-like 62 )

HSP 1 Score: 115.9 bits (289), Expect = 4.6e-26
Identity = 72/167 (43.11%), Postives = 102/167 (61.08%), Query Frame = 0


Query: 85  VARSMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFS 144
           V +S GR+KIEM  +K+  + QVTFSKRR+GLFKKA++L TLCG EVAIVVFSPG K FS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 145 FGNPNVDGVVDRYLNRESEP--------IPAVREIGVLEKENEELVDLTKRLQLEKKKGE 204
           FG+PNVD V+DR++N    P        +   R   +++  N  L  +  +L+ EKKK +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 205 MLEKEMKSIE---------IEDLDLDALLNLKESLEILRENVKIKES 235
            L+K  +  +         +E+L L  L   K +LE L++ V ++ S
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEAS 168

[Close]

BLAST of Sed0017436 vs. TAIR 10
Match: AT3G66656.1 (AGAMOUS-like 91 )

HSP 1 Score: 110.5 bits (275), Expect = 2.0e-24
Identity = 74/177 (41.81%), Postives = 106/177 (59.89%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGRRKI+M+ V+D  ++QVTFSKRR GLFKKA++LATLC  EV IVVFSPG K +SFG P
Sbjct: 1   MGRRKIKMEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKP 60

Query: 149 NVDGVVDRYLN--RESEPIPAVREIGVL--------EKENEELVDLTKRLQLEKKKGEML 208
           N D + +R+ N   E E   +    G          +K  + L  +T+  + EKK GE L
Sbjct: 61  NFDVIAERFKNEFEEEEEGDSCETSGYSRGNRARQEKKICKRLNSITEEAEAEKKHGEDL 120

Query: 209 EKEMKSIE-------IEDLDLDALLNLKESLEILRENVKIKESELEASSSLLLLANE 249
            K ++S E       IE+L L+ L   +  ++ +   ++   S ++ASSSL+ L+N+
Sbjct: 121 HKWLESAEQDKFNKPIEELTLEELKEFEAKIKKISCGIQSNISHMQASSSLMFLSND 177

[Close]

BLAST of Sed0017436 vs. TAIR 10
Match: AT2G24840.1 (AGAMOUS-like 61 )

HSP 1 Score: 102.8 bits (255), Expect = 4.1e-22
Identity = 64/171 (37.43%), Postives = 103/171 (60.23%), Query Frame = 0


Query: 74  IYTRNTAIIRPVARSMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAI 133
           ++T+ T + +    S+GR+KI M  +K    RQVTFSKRR GLFKKA++L TLCG E+ I
Sbjct: 48  LHTKKTMMSKK-KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGI 107

Query: 134 VVFSPGGKAFSFGNPNVDGVVDRYLNRESEPIPAVREI----GVLEKENEELVDLTKRLQ 193
           +VFSP  K FSFG+P+V+ V+DRY++R +  +   +++        + N +L  +   ++
Sbjct: 108 IVFSPAKKPFSFGHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVE 167

Query: 194 LEKKKGEMLEKEMKSI-----------EIEDLDLDALLNLKESLEILRENV 230
            EKKKG+ +E+  K              +E++++  L  +K +LE LR+ V
Sbjct: 168 EEKKKGQAMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]

BLAST of Sed0017436 vs. TAIR 10
Match: AT3G57230.2 (AGAMOUS-like 16 )

HSP 1 Score: 88.6 bits (218), Expect = 7.9e-18
Identity = 55/158 (34.81%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 89  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEVAIVVFSPGGKAFSFGNP 148
           MGR KI +K + +  SRQVTFSKRRNGL KKA +LA LC  EV +++FS  G+ + F + 
Sbjct: 1   MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 149 NVDGVVDRY------LNRESEPIPAVREIGVLEKE----NEELVDLTKRLQLEKKKGEML 208
           ++  V++RY       + E++P   ++E+ ++  E    +EELV               L
Sbjct: 61  SMKSVIERYSDAKGETSSENDPASEIQEMYIVTLEKYAYSEELV---------------L 120

Query: 209 EKEMKSIEIEDLDLDALLNLKESLEILRENVKIKESEL 237
           +++M   E+  L ++AL NL+  LE+    V++K+ ++
Sbjct: 121 DRQMMGEELSGLSVEALQNLENQLELSLRGVRMKKDQM 143

The following BLAST results are available for this feature:

BLAST of Sed0017436 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519112.1	4.8e-65	84.02	agamous-like MADS-box protein AGL29 [Cucurbita pepo subsp. pepo]	[more]
KAG6583909.1	6.2e-65	84.02	Agamous-like MADS-box protein AGL29, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022927257.1	1.1e-64	84.02	agamous-like MADS-box protein AGL29 [Cucurbita moschata]	[more]
XP_023001476.1	1.1e-64	84.02	agamous-like MADS-box protein AGL29 [Cucurbita maxima]	[more]
KAG7019526.1	1.5e-63	82.25	Agamous-like MADS-box protein AGL29, partial [Cucurbita argyrosperma subsp. argy...	[more]

BLAST of Sed0017436 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64703	7.7e-26	42.44	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=...	[more]
Q9FKK2	6.5e-25	43.11	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=...	[more]
Q4PSU4	5.7e-21	37.43	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=...	[more]
Q9LMM8	2.5e-16	36.20	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=...	[more]
Q6Z6W2	1.2e-15	37.33	MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]

BLAST of Sed0017436 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KIQ5	5.1e-65	84.02	agamous-like MADS-box protein AGL29 OS=Cucurbita maxima OX=3661 GN=LOC111495601 ...	[more]
A0A6J1EGN3	5.1e-65	84.02	agamous-like MADS-box protein AGL29 OS=Cucurbita moschata OX=3662 GN=LOC11143415...	[more]
A0A6J1CEW1	1.3e-63	81.07	agamous-like MADS-box protein AGL29 OS=Momordica charantia OX=3673 GN=LOC1110108...	[more]
A0A5A7UFJ7	1.1e-56	79.52	Agamous-like MADS-box protein AGL29 isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3B9N7	1.1e-56	79.52	agamous-like MADS-box protein AGL29 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Sed0017436 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34440.1	5.5e-27	42.44	AGAMOUS-like 29	[more]
AT5G60440.1	4.6e-26	43.11	AGAMOUS-like 62	[more]
AT3G66656.1	2.0e-24	41.81	AGAMOUS-like 91	[more]
AT2G24840.1	4.1e-22	37.43	AGAMOUS-like 61	[more]
AT3G57230.2	7.9e-18	34.81	AGAMOUS-like 16	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 212..235
None	No IPR available	COILS	Coil	Coil	coord: 171..208
None	No IPR available	PANTHER	PTHR11945:SF229	AGAMOUS-LIKE MADS-BOX PROTEIN AGL29	coord: 90..253
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 90..253
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 111..126 score: 64.15 coord: 91..111 score: 48.83 coord: 126..147 score: 41.53
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 89..148 e-value: 3.5E-32 score: 122.9
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 100..145 e-value: 6.3E-23 score: 80.1
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 89..149 score: 26.338114
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 102..165 e-value: 4.4E-26 score: 92.5
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 89..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017436.1	Sed0017436.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding