Sed0017392 (gene) Chayote v1

Overview


Name	Sed0017392
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Transcription factor UPBEAT1
Location	LG06: 35645596 .. 35645898 (-)
RNA-Seq Expression	Sed0017392
Synteny	Sed0017392

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTTTCTTTGAAAGATACGCTTCGTAAAAACGAAGAACGAGGTGACTCTAATGATCATGTTTCGGACAGGAGAATCACGAAACGAGTCGAGAGAAGGCAACCGAGCACGTCGATAACGAGGTCGGAGAAGAAGGTTTGCTCTAAAAGGATTAGGAGGCTGAGAAAGATGATTCCAAAGGGTGAATCAATGGAGATGAATGGGCTTTTTAGAGAGACAGCTGATTATATTATGGGGTTACAAATGAAGGTGAGGATGATGCAAGCTTTGGTTTATGTGTTGAATGACTATGATGAATAA

mRNA sequence

ATGAAAGTTTCTTTGAAAGATACGCTTCGTAAAAACGAAGAACGAGGTGACTCTAATGATCATGTTTCGGACAGGAGAATCACGAAACGAGTCGAGAGAAGGCAACCGAGCACGTCGATAACGAGGTCGGAGAAGAAGGTTTGCTCTAAAAGGATTAGGAGGCTGAGAAAGATGATTCCAAAGGGTGAATCAATGGAGATGAATGGGCTTTTTAGAGAGACAGCTGATTATATTATGGGGTTACAAATGAAGGTGAGGATGATGCAAGCTTTGGTTTATGTGTTGAATGACTATGATGAATAA

Coding sequence (CDS)

ATGAAAGTTTCTTTGAAAGATACGCTTCGTAAAAACGAAGAACGAGGTGACTCTAATGATCATGTTTCGGACAGGAGAATCACGAAACGAGTCGAGAGAAGGCAACCGAGCACGTCGATAACGAGGTCGGAGAAGAAGGTTTGCTCTAAAAGGATTAGGAGGCTGAGAAAGATGATTCCAAAGGGTGAATCAATGGAGATGAATGGGCTTTTTAGAGAGACAGCTGATTATATTATGGGGTTACAAATGAAGGTGAGGATGATGCAAGCTTTGGTTTATGTGTTGAATGACTATGATGAATAA

Protein sequence

MKVSLKDTLRKNEERGDSNDHVSDRRITKRVERRQPSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE

Homology

[Close]

BLAST of Sed0017392 vs. NCBI nr
Match: KGN58133.1 (hypothetical protein Csa_017541 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-18
Identity = 57/86 (66.28%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 18  SNDHVSDRRITKRVERRQ---PSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRET 77
           + D VSDRRI K+V +++    S S   SEK++C KRIRRL+KM+PK ESME+NGLFRET
Sbjct: 5   AKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRET 64

Query: 78  ADYIMGLQMKVRMMQALVYVLNDYDE 101
           ADYI+ LQMKVRMMQALV+VLN  DE
Sbjct: 65  ADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of Sed0017392 vs. NCBI nr
Match: KAA0038125.1 (basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic helix-loop-helix protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17
Identity = 57/86 (66.28%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 18  SNDHVSDRRITKRVERRQ---PSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRET 77
           + D VSDRRI K+V +++    S     SEK++C KRIR+LRKMIPK ESME+NGLFRET
Sbjct: 5   AKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRET 64

Query: 78  ADYIMGLQMKVRMMQALVYVLNDYDE 101
           ADYI+ LQMKVRMMQALV+VLN  DE
Sbjct: 65  ADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of Sed0017392 vs. NCBI nr
Match: KAG1365315.1 (Transcription factor UPBEAT1 [Cocos nucifera])

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-07
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 41  TRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYD 100
           +R  +    +R+++LR+++P GESME+ GLFRETADYIM LQM+V++MQ +V VL+  D
Sbjct: 42  SRKPRSHIERRMKKLRRLLPNGESMELEGLFRETADYIMCLQMQVKVMQIMVSVLSPMD 100

[Close]

BLAST of Sed0017392 vs. NCBI nr
Match: XP_041022171.1 (transcription factor UPBEAT1 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 64.3 bits (155), Expect = 6.8e-07
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 50  KRIRRLRKMIPKGESM-EMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE 101
           +R+R L+++IP GESM  ++GLFRETADYI+ LQM+VR+MQ  V VL ++DE
Sbjct: 94  RRVRTLKRLIPNGESMGNLDGLFRETADYILSLQMRVRVMQTAVNVLTNFDE 145

[Close]

BLAST of Sed0017392 vs. NCBI nr
Match: GFZ04515.1 (hypothetical protein Acr_17g0000870 [Actinidia rufa])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 30/55 (54.55%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 42  RSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLN 97
           R  K V  K++R LRK++PK ESM ++GLFR+TA+YI+ LQM+V++MQ +V VL+
Sbjct: 60  RRRKTVVEKKVRALRKLVPKSESMGLDGLFRDTAEYILALQMRVQVMQIMVQVLS 114

[Close]

BLAST of Sed0017392 vs. ExPASy Swiss-Prot
Match: O22901 (Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-05
Identity = 26/72 (36.11%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 27 ITKRVERRQPSTSITRSEKKVCSKRIRRLRKMIPKGESME-MNGLFRETADYIMGLQMKV 86
          + K + R + S   +R   +   +R++ L++++P  ++ E ++GLFR+TADYI+ L+MKV
Sbjct: 27 VKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILALEMKV 86

Query: 87 RMMQALVYVLND 98
          ++MQ +V VL +
Sbjct: 87 KVMQTMVQVLTE 98

[Close]

BLAST of Sed0017392 vs. ExPASy TrEMBL
Match: A0A0A0L8J6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 57/86 (66.28%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 18  SNDHVSDRRITKRVERRQ---PSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRET 77
           + D VSDRRI K+V +++    S S   SEK++C KRIRRL+KM+PK ESME+NGLFRET
Sbjct: 5   AKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRET 64

Query: 78  ADYIMGLQMKVRMMQALVYVLNDYDE 101
           ADYI+ LQMKVRMMQALV+VLN  DE
Sbjct: 65  ADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of Sed0017392 vs. ExPASy TrEMBL
Match: A0A5A7T9M0 (Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00560 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.4e-18
Identity = 57/86 (66.28%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 18  SNDHVSDRRITKRVERRQ---PSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRET 77
           + D VSDRRI K+V +++    S     SEK++C KRIR+LRKMIPK ESME+NGLFRET
Sbjct: 5   AKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRET 64

Query: 78  ADYIMGLQMKVRMMQALVYVLNDYDE 101
           ADYI+ LQMKVRMMQALV+VLN  DE
Sbjct: 65  ADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of Sed0017392 vs. ExPASy TrEMBL
Match: A0A2N9IQ45 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54520 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.3e-07
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 21  HVSDRRITKRVERRQPSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMG 80
           HV  +R T+ + +R      +R +     +R++ L+K+IP G+SM ++GLF+ETADYI+ 
Sbjct: 57  HVKSKRPTRILMKRVARLG-SRKQANGIERRVKTLKKLIPNGDSMGLDGLFKETADYILS 116

Query: 81  LQMKVRMMQALVYVLNDYDE 101
           LQM+VR MQ +V VL   DE
Sbjct: 117 LQMRVRAMQVMVNVLTGSDE 135

[Close]

BLAST of Sed0017392 vs. ExPASy TrEMBL
Match: A0A438IXS1 (Transcription factor UPBEAT1 OS=Vitis vinifera OX=29760 GN=UPB1_1 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.6e-07
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 25  RRITKRVER----RQPSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMG 84
           RR+ +R +R    R+     +R       +R+R L+K++P G+SM ++GLFRETADYI+ 
Sbjct: 42  RRLQRRRQRILMKRRAHLPDSRRPTSGIQRRVRTLKKLVPNGDSMGLDGLFRETADYILS 101

Query: 85  LQMKVRMMQALVYVLNDYDE 101
           LQM+V +MQ +V VL+D D+
Sbjct: 102 LQMRVEVMQIMVKVLSDSDK 121

[Close]

BLAST of Sed0017392 vs. ExPASy TrEMBL
Match: F6HZB3 (BHLH domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g01700 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.6e-07
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 25  RRITKRVER----RQPSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMG 84
           RR+ +R +R    R+     +R       +R+R L+K++P G+SM ++GLFRETADYI+ 
Sbjct: 42  RRLQRRRQRILMKRRAHLPDSRRPTSGIQRRVRTLKKLVPNGDSMGLDGLFRETADYILS 101

Query: 85  LQMKVRMMQALVYVLNDYDE 101
           LQM+V +MQ +V VL+D D+
Sbjct: 102 LQMRVEVMQIMVKVLSDSDK 121

[Close]

BLAST of Sed0017392 vs. TAIR 10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 50.4 bits (119), Expect = 9.4e-07
Identity = 26/72 (36.11%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 27 ITKRVERRQPSTSITRSEKKVCSKRIRRLRKMIPKGESME-MNGLFRETADYIMGLQMKV 86
          + K + R + S   +R   +   +R++ L++++P  ++ E ++GLFR+TADYI+ L+MKV
Sbjct: 27 VKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILALEMKV 86

Query: 87 RMMQALVYVLND 98
          ++MQ +V VL +
Sbjct: 87 KVMQTMVQVLTE 98

The following BLAST results are available for this feature:

BLAST of Sed0017392 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58133.1	2.9e-18	66.28	hypothetical protein Csa_017541 [Cucumis sativus]	[more]
KAA0038125.1	1.1e-17	66.28	basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic heli...	[more]
KAG1365315.1	4.0e-07	52.54	Transcription factor UPBEAT1 [Cocos nucifera]	[more]
XP_041022171.1	6.8e-07	59.62	transcription factor UPBEAT1 [Juglans microcarpa x Juglans regia]	[more]
GFZ04515.1	1.2e-06	54.55	hypothetical protein Acr_17g0000870 [Actinidia rufa]	[more]

BLAST of Sed0017392 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22901	1.3e-05	36.11	Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1	[more]

BLAST of Sed0017392 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8J6	1.4e-18	66.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1	[more]
A0A5A7T9M0	5.4e-18	66.28	Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A2N9IQ45	4.3e-07	43.75	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54520 PE=4 SV=1	[more]
A0A438IXS1	5.6e-07	43.75	Transcription factor UPBEAT1 OS=Vitis vinifera OX=29760 GN=UPB1_1 PE=4 SV=1	[more]
F6HZB3	5.6e-07	43.75	BHLH domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g01700 P...	[more]

BLAST of Sed0017392 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47270.1	9.4e-07	36.11	sequence-specific DNA binding transcription factors;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR33124:SF39	TRANSCRIPTION FACTOR UPBEAT1	coord: 14..97
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 14..97
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 42..92 e-value: 3.59324E-12 score: 54.1656

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017392.1	Sed0017392.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0005488	binding