Sed0017306 (gene) Chayote v1

Overview


Name	Sed0017306
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Complex 1 LYR protein
Location	LG11: 26822055 .. 26825447 (-)
RNA-Seq Expression	Sed0017306
Synteny	Sed0017306

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTTTTCATCCGCTTGAGACGGGATTCCAGGTCTGTTCTCCGTTGTGGCGAACTTGCTCCTTCGTCAATCTCTCTGAATAATCAATCTTCCCTCTCTCAATCTCACTACCTTCGATCCTTCCAGGTCTGTTATCGTGATCAAATTTGTCGTTTGTTTTCCTTCGAGATTTTGTTGTTGTTTTTTCCTCAAAATTTGAATTAGCGATTATGTTGTGCTAGGGTTTCTGAAATCCCGATATTAGATGTTTCACAGAGTGATTAGCATTCAACGTCTACGTTCTTTTAGCTTGAGCTTGTAATAGGATTTGACGGAGGATACAATTTTTCCGGATATTTTCTCTAGATATTGATTGTGATTGTACCTTTAGCATAAATCATAATCAATTCCCAGAACTCTGATCAATAAAATATTTTGATTTTTTGGTTGCAAAGTATAGTCTATAGTTAGAAGTTTAGAACATTAATGGTTGTTGGCTTTAATGAGAGTTGAATAACCTTTAAAATTTGTAATAGTTATGAGTAACTTTTGTGTCATTCTGAGTTTTAGGAGAGAGGTGTTCAATAATACATTTTGAATGTCAAAAGTATCGTAAGAAACCAAAAGATTGTGAGTTCAATTCATAGTGCTATCTACCTAGGAATTAATTTCTTGCAGGTTTCCTTTTAACATTCAAATGTTGTAGAGTTAGGCGGTGTGTCCCGTGAGAATAGTCAAGGTGCATATGAACTGACTCATACATTTATGGATATCAAAAAAATAAAATACATTTTGTATCTATGATAACCTAAGTTTGGCTTTGTTTGTAAATGTGAATCATAGTTTTCGTTTTAGAAAATCTGAATCCATTACTGCATTGCTTCTAAAGGCGGTCACATCAATTCCAAGATATATTTCATTTTGTGGAACAATGTGTATAACTTTAGAACAAGCTCTATATCAAAATCTTGCTCAGATTCAGTACTCACTCCGATACCATTTGATAGGACCTGATTTTGCAGTAGAAATTGCCAGAAAACAACCCTCAAACTGTATTACTATGTGATTAGTAAAATTACAATACCAAATCCCAAACACATTGAGGTGCTTAAACTTTACCATCCAAGGACTTAAAGAGGCCTAGACTCTCCCATCCAAGCACTTTAAGAGGCATGAACTCTTCCAAGATTATTCTTCCAAATTCTTTTTACAACTACACTACTTACCCTAAGCAAGCACCGTTATGCCACTACCACTACTATTACCAATATCTTATAGTAATAGTATCTCGACAACCATTCCTCTGCATTGGTGTTGGTTGATGTTTGAGCCCTATTCTTGGCATGCGGAAAACCGTGCGAGTGCATTGCTTCGACACTTATCTTTCCAGTGATTTTCTTTTTTTTGAATTCTCTATCGGTATTTAGATTAAGTAGGGCAGTGTTCTAGCTATAGCTTGTATGATCCGACCTACTCCATCTAACATTCTATACTCAACAAGGGTCTCTCCCTTCATCGTCGACCATAGTGTAGCACCGCCTTTCTCTAACCCTTGAAAGTTCGTGGTCTTTAGTGTAACAACTTCCCTTTCTTTCTTTGTCACTTGCAAAGCGATTTCGTGATGAGCCACGCGTCTTCTCCATACCTTCTACCACTTAGCGCCAAACCGGGATGCGTCTCCCTCTCCCCTCCCCTTCATGTCAGTTCCGTTGGAGTTTCCTCCTTATGCAAGTTCTTTTCTCAGATGCGTAGCTGATAATGAGATAATCCTTTGGATGTACAAGTCTTTTCTTTATGACTCAAAGTTGGGCGTTCAACTTTCTAAGAGTTCAAGTTTTGTATTTACCGTGTTATCTTATTGTAAAAATAACTTAGAATCTGGCTTAAAACCTTCTAACACTTTCATCTTATCAATGTAAATATTTTGTTTCCTATAAAAAAAAACATACTAGGGTTTGGATTCCTTTTTGGTTTATAAAAAATGTTCTACTTTTGTGAGGTGTTGGTTTATTTCCCAAAATGGTTTGGTCTAGTTTGTGTTATATGTTCAAAATTTGATTTCAAAGGTATTATGATGTCCACCAGGCTTTTGTTTTGGCTTGATGTGGATTTTTTCTTTGGTTGGAAAAGAAATTGTTGTGTATATCCATTCAACATCCTATGATATATCTTTAGTATTTTGCAGGAAAGTGCATGGGTAGTGTCTTGAGGCATGGTGGTGGCTGTAAGAAAAGCTGTCCGATAGTGAAGATTAAGATGGCTGCCCTTTGGAAACCAGATTCCAAGTAAATCATTCGGCACTGCCCCATTGTGATCAAAGGGAATTATTTGAATCATCGAGTTGATTGACAGCGTATGCAGTCGAGCAGGGATGATGATCCTGAGGCTGGTGGGAAAATGTTTAAACCTATCAAATCAAAAGAATTGTCTGGCTTGTGATAATATTGTGTTCCACCTTCGAGTTTTGCATAATGGTCCAGACACAATTGATGAACTTTTAGACAGACATGTGGTTAAGAAAGAAAAGTCCTATGATGATGAAGATGATGAATTGATAACTCAGAGACGCCTCACCAGCACTCGACGTGAAGCTCTAAGTCTGTACCGAGATATTCTCCGTGCAACTCGATTTTTTATGTGGCCAGATTCTCGAGGTGTCTTATGGCAAGATATTCTCAGGGAGAATGCTCGGAAGGAGTTTGAGGATGCCCGCTACGAGCCTGATCCAGAAATTGTGACACGACTTCTCATCGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGATGCTGGAGATTGATCAGAAACAAAGTGGTCGAGATCAACTTTGATCTGTCAAATGGTTATTCTGATCTAATCTGCTATTACCATAGAAGCTTAAGTTTAGTGGGCCCTTTGTTTTGTATTTGGGTCTAATCAACTGAGAGGTTATTTAACATACAAAAAACATTAGTTGCTAATAAAATGAAAGCAAAAGGAAAGACCAGAAATGGAATTCATTTGTTATGGTGGTTTGTTTGAACTCCTTAGTTTTTATATGTGGAGGCAATCCTGAAGCAAGTGCTTAATAGTCAATCTTCGAAAATCGTCAGCGTCAAGAGCTGGAAAGATTTCTACACCCACAACTATACACTACAATCGCCATCAACATTTGCCAGAATGCAATGTTCATTACTATACACTACAATGCTCACTTGCGTAAGCAATGTAAGCTATTATGTTCCACCCGTACACTTGTTTTATCCTGTTTACTCACTTTTAACTGTAGTTCAGTTTGGCTGCTTGGGCAATGAGTTTGCATGAGACATTGCATTTGGGTTAAAAAAATATTTTCGAACGTTTACTTTAACTTGGCACTGGTGGTTTCTTAGAGAACATTTTAGGGGCAGAACTATG

mRNA sequence

CTTTTTTTTCATCCGCTTGAGACGGGATTCCAGGTCTGTTCTCCGTTGTGGCGAACTTGCTCCTTCGTCAATCTCTCTGAATAATCAATCTTCCCTCTCTCAATCTCACTACCTTCGATCCTTCCAGGAAAGTGCATGGGTAGTGTCTTGAGGCATGGTGGTGGCTGTAAGAAAAGCTGTCCGATAGTGAAGATTAAGATGGCTGCCCTTTGGAAACCAGATTCCAAGTAAATCATTCGGCACTGCCCCATTGTGATCAAAGGGAATTATTTGAATCATCGAGTTGATTGACAGCGTATGCAGTCGAGCAGGGATGATGATCCTGAGGCTGGTGGGAAAATGTTTAAACCTATCAAATCAAAAGAATTGTCTGGCTTGTGATAATATTGTGTTCCACCTTCGAGTTTTGCATAATGGTCCAGACACAATTGATGAACTTTTAGACAGACATGTGGTTAAGAAAGAAAAGTCCTATGATGATGAAGATGATGAATTGATAACTCAGAGACGCCTCACCAGCACTCGACGTGAAGCTCTAAGTCTGTACCGAGATATTCTCCGTGCAACTCGATTTTTTATGTGGCCAGATTCTCGAGGTGTCTTATGGCAAGATATTCTCAGGGAGAATGCTCGGAAGGAGTTTGAGGATGCCCGCTACGAGCCTGATCCAGAAATTGTGACACGACTTCTCATCGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGATGCTGGAGATTGATCAGAAACAAAGTGGTCGAGATCAACTTTGATCTGTCAAATGGTTATTCTGATCTAATCTGCTATTACCATAGAAGCTTAAGTTTAGTGGGCCCTTTGTTTTGTATTTGGGTCTAATCAACTGAGAGGTTATTTAACATACAAAAAACATTAGTTGCTAATAAAATGAAAGCAAAAGGAAAGACCAGAAATGGAATTCATTTGTTATGGTGGTTTGTTTGAACTCCTTAGTTTTTATATGTGGAGGCAATCCTGAAGCAAGTGCTTAATAGTCAATCTTCGAAAATCGTCAGCGTCAAGAGCTGGAAAGATTTCTACACCCACAACTATACACTACAATCGCCATCAACATTTGCCAGAATGCAATGTTCATTACTATACACTACAATGCTCACTTGCGTAAGCAATGTAAGCTATTATGTTCCACCCGTACACTTGTTTTATCCTGTTTACTCACTTTTAACTGTAGTTCAGTTTGGCTGCTTGGGCAATGAGTTTGCATGAGACATTGCATTTGGGTTAAAAAAATATTTTCGAACGTTTACTTTAACTTGGCACTGGTGGTTTCTTAGAGAACATTTTAGGGGCAGAACTATG

Coding sequence (CDS)

ATGATGATCCTGAGGCTGGTGGGAAAATGTTTAAACCTATCAAATCAAAAGAATTGTCTGGCTTGTGATAATATTGTGTTCCACCTTCGAGTTTTGCATAATGGTCCAGACACAATTGATGAACTTTTAGACAGACATGTGGTTAAGAAAGAAAAGTCCTATGATGATGAAGATGATGAATTGATAACTCAGAGACGCCTCACCAGCACTCGACGTGAAGCTCTAAGTCTGTACCGAGATATTCTCCGTGCAACTCGATTTTTTATGTGGCCAGATTCTCGAGGTGTCTTATGGCAAGATATTCTCAGGGAGAATGCTCGGAAGGAGTTTGAGGATGCCCGCTACGAGCCTGATCCAGAAATTGTGACACGACTTCTCATCGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGATGCTGGAGATTGATCAGAAACAAAGTGGTCGAGATCAACTTTGA

Protein sequence

MMILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL

Homology

[Close]

BLAST of Sed0017306 vs. NCBI nr
Match: XP_038884246.1 (uncharacterized protein LOC120075144 [Benincasa hispida])

HSP 1 Score: 269.2 bits (687), Expect = 2.2e-68
Identity = 134/155 (86.45%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 4   LRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELIT 63
           +RLVGKCLNLS  KN L C+ I FH RVLHNGPDT+ ELLDRHVVKKEKS+DDE+DELIT
Sbjct: 1   MRLVGKCLNLSIHKNFLTCNKIGFHPRVLHNGPDTVAELLDRHVVKKEKSFDDEEDELIT 60

Query: 64  QRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILRENARKEFEDARYEPDPEIVT 123
           QRRLT+TRREALSLYRDILRATRFFMWPDSRGVLW+D+LR+NARKEFEDARYE DPEIVT
Sbjct: 61  QRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARYESDPEIVT 120

Query: 124 RLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL 159
           RLLIGGRDAVQSALDKLAEKQM EID+KQ+GRDQL
Sbjct: 121 RLLIGGRDAVQSALDKLAEKQMQEIDKKQNGRDQL 155

[Close]

BLAST of Sed0017306 vs. NCBI nr
Match: XP_022144304.1 (uncharacterized protein LOC111014019 [Momordica charantia])

HSP 1 Score: 265.8 bits (678), Expect = 2.4e-67
Identity = 133/156 (85.26%), Postives = 144/156 (92.31%), Query Frame = 0


Query: 2   MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDEL 61
           M +RLVGKCLNLS  K+ LAC+ I FH RVLHNGPDTIDELLDRHVVKKEKS++DEDDEL
Sbjct: 9   MTIRLVGKCLNLSIHKHFLACNKIGFHPRVLHNGPDTIDELLDRHVVKKEKSFNDEDDEL 68

Query: 62  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILRENARKEFEDARYEPDPEI 121
           ITQR LTSTRREALSLYRDI+RATRFFMWPDSRGVLW+D+LRENARKEFE+ARYE DPE+
Sbjct: 69  ITQRHLTSTRREALSLYRDIIRATRFFMWPDSRGVLWRDVLRENARKEFEEARYESDPEV 128

Query: 122 VTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ 158
           VTRLLIGGRDAVQSALDKLAEKQM EID+KQ G DQ
Sbjct: 129 VTRLLIGGRDAVQSALDKLAEKQMQEIDKKQHGGDQ 164

[Close]

BLAST of Sed0017306 vs. NCBI nr
Match: XP_022961619.1 (uncharacterized protein LOC111462339 [Cucurbita moschata] >XP_022961620.1 uncharacterized protein LOC111462339 [Cucurbita moschata] >KAG6598519.1 hypothetical protein SDJN03_08297, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260.8 bits (665), Expect = 7.8e-66
Identity = 129/156 (82.69%), Postives = 144/156 (92.31%), Query Frame = 0


Query: 2   MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDEL 61
           M +RLV KC+ LS  KN LAC+ + FH R+LHNGPDTIDELLDRHVVKKEKS+DD+++EL
Sbjct: 1   MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60

Query: 62  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILRENARKEFEDARYEPDPEI 121
           ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLW+D+LR+NARKEFEDAR+E DPEI
Sbjct: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120

Query: 122 VTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ 158
           VTRLLIGGRDAVQSALDKLAEKQ  EID+KQSGRD+
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR 156

[Close]

BLAST of Sed0017306 vs. NCBI nr
Match: XP_023545212.1 (uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.5 bits (654), Expect = 1.5e-64
Identity = 128/156 (82.05%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 2   MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDEL 61
           M +RLV KC+ LS  KN LAC+ I +  R LHNGPDTIDELLDRHVVKKEKS+DD+++EL
Sbjct: 1   MSMRLVEKCVKLSTHKNFLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60

Query: 62  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILRENARKEFEDARYEPDPEI 121
           ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLW+D+LR+NARKEFEDAR+E DPEI
Sbjct: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120

Query: 122 VTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ 158
           VTRLLIGGRDAVQSALDKLAEKQ  EID+KQSGRD+
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR 156

[Close]

BLAST of Sed0017306 vs. NCBI nr
Match: XP_031736624.1 (uncharacterized protein LOC101214249 [Cucumis sativus] >KGN62269.1 hypothetical protein Csa_018772 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 2.5e-64
Identity = 131/158 (82.91%), Postives = 142/158 (89.87%), Query Frame = 0


Query: 2   MILRLVGKCLNLSN-QKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDE 61
           M +RLVGK LNLS+  KN L C  I FH RVLHNGPDT++ELLDRHVVKKEK +DDEDD+
Sbjct: 1   MTMRLVGKYLNLSSIHKNFLTCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKFFDDEDDK 60

Query: 62  LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILRENARKEFEDARYEPDPE 121
           LITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLW+D+LRENARKEFEDAR E DPE
Sbjct: 61  LITQRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEDARLESDPE 120

Query: 122 IVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL 159
           +VTRLLIGGRDAVQSALDKLAEKQ  EID+KQ GRDQL
Sbjct: 121 MVTRLLIGGRDAVQSALDKLAEKQREEIDKKQGGRDQL 158

[Close]

BLAST of Sed0017306 vs. ExPASy TrEMBL
Match: A0A6J1CRY1 (uncharacterized protein LOC111014019 OS=Momordica charantia OX=3673 GN=LOC111014019 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 133/156 (85.26%), Postives = 144/156 (92.31%), Query Frame = 0


Query: 2   MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDEL 61
           M +RLVGKCLNLS  K+ LAC+ I FH RVLHNGPDTIDELLDRHVVKKEKS++DEDDEL
Sbjct: 9   MTIRLVGKCLNLSIHKHFLACNKIGFHPRVLHNGPDTIDELLDRHVVKKEKSFNDEDDEL 68

Query: 62  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILRENARKEFEDARYEPDPEI 121
           ITQR LTSTRREALSLYRDI+RATRFFMWPDSRGVLW+D+LRENARKEFE+ARYE DPE+
Sbjct: 69  ITQRHLTSTRREALSLYRDIIRATRFFMWPDSRGVLWRDVLRENARKEFEEARYESDPEV 128

Query: 122 VTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ 158
           VTRLLIGGRDAVQSALDKLAEKQM EID+KQ G DQ
Sbjct: 129 VTRLLIGGRDAVQSALDKLAEKQMQEIDKKQHGGDQ 164

[Close]

BLAST of Sed0017306 vs. ExPASy TrEMBL
Match: A0A6J1HEL0 (uncharacterized protein LOC111462339 OS=Cucurbita moschata OX=3662 GN=LOC111462339 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.8e-66
Identity = 129/156 (82.69%), Postives = 144/156 (92.31%), Query Frame = 0


Query: 2   MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDEL 61
           M +RLV KC+ LS  KN LAC+ + FH R+LHNGPDTIDELLDRHVVKKEKS+DD+++EL
Sbjct: 1   MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60

Query: 62  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILRENARKEFEDARYEPDPEI 121
           ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLW+D+LR+NARKEFEDAR+E DPEI
Sbjct: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120

Query: 122 VTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ 158
           VTRLLIGGRDAVQSALDKLAEKQ  EID+KQSGRD+
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR 156

[Close]

BLAST of Sed0017306 vs. ExPASy TrEMBL
Match: A0A0A0LMK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346590 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.2e-64
Identity = 131/158 (82.91%), Postives = 142/158 (89.87%), Query Frame = 0


Query: 2   MILRLVGKCLNLSN-QKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDE 61
           M +RLVGK LNLS+  KN L C  I FH RVLHNGPDT++ELLDRHVVKKEK +DDEDD+
Sbjct: 1   MTMRLVGKYLNLSSIHKNFLTCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKFFDDEDDK 60

Query: 62  LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILRENARKEFEDARYEPDPE 121
           LITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLW+D+LRENARKEFEDAR E DPE
Sbjct: 61  LITQRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEDARLESDPE 120

Query: 122 IVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL 159
           +VTRLLIGGRDAVQSALDKLAEKQ  EID+KQ GRDQL
Sbjct: 121 MVTRLLIGGRDAVQSALDKLAEKQREEIDKKQGGRDQL 158

[Close]

BLAST of Sed0017306 vs. ExPASy TrEMBL
Match: A0A5A7VCD6 (Complex 1 LYR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001620 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.1e-64
Identity = 131/158 (82.91%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 2   MILRLVGKCLNLSN-QKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDE 61
           M +RLVGK LNLS+  KN L C  I FH RVLHNGPDT++ELLDRHVVKKEKS DD+ D+
Sbjct: 1   MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60

Query: 62  LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILRENARKEFEDARYEPDPE 121
           LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLW+D+LR+NARKEFEDAR+E DPE
Sbjct: 61  LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120

Query: 122 IVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL 159
           IVTRLLIGGRDAVQSALDKLAEKQ  EID+KQSGRDQL
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL 158

[Close]

BLAST of Sed0017306 vs. ExPASy TrEMBL
Match: A0A1S4DWJ1 (uncharacterized protein LOC103488569 OS=Cucumis melo OX=3656 GN=LOC103488569 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.1e-64
Identity = 131/158 (82.91%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 2   MILRLVGKCLNLSN-QKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDE 61
           M +RLVGK LNLS+  KN L C  I FH RVLHNGPDT++ELLDRHVVKKEKS DD+ D+
Sbjct: 1   MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60

Query: 62  LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILRENARKEFEDARYEPDPE 121
           LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLW+D+LR+NARKEFEDAR+E DPE
Sbjct: 61  LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120

Query: 122 IVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL 159
           IVTRLLIGGRDAVQSALDKLAEKQ  EID+KQSGRDQL
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL 158

[Close]

BLAST of Sed0017306 vs. TAIR 10
Match: AT1G76060.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 177.9 bits (450), Expect = 6.2e-45
Identity = 94/154 (61.04%), Postives = 116/154 (75.32%), Query Frame = 0


Query: 2   MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDD-E 61
           M+   + K  NL+ + + +     V   R LH GPDT++ELL+RH+ KKEK   D D+ E
Sbjct: 1   MMAAKLQKWRNLAGRLDLMNRSGAVSTRRFLHEGPDTVEELLERHLAKKEKPIIDHDEAE 60

Query: 62  LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILRENARKEFEDARYEPDPE 121
            + +RRLTSTRREALSLYRDILRATRFF W DSRG LW+D+LRENARKEFE AR+E DPE
Sbjct: 61  FLNRRRLTSTRREALSLYRDILRATRFFTWIDSRGNLWRDVLRENARKEFEAARFETDPE 120

Query: 122 IVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSG 155
           ++TRLLIGG DAV SALDKLAEKQ   I++++ G
Sbjct: 121 VITRLLIGGSDAVSSALDKLAEKQREMIEKQRRG 154

The following BLAST results are available for this feature:

BLAST of Sed0017306 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884246.1	2.2e-68	86.45	uncharacterized protein LOC120075144 [Benincasa hispida]	[more]
XP_022144304.1	2.4e-67	85.26	uncharacterized protein LOC111014019 [Momordica charantia]	[more]
XP_022961619.1	7.8e-66	82.69	uncharacterized protein LOC111462339 [Cucurbita moschata] >XP_022961620.1 unchar...	[more]
XP_023545212.1	1.5e-64	82.05	uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo]	[more]
XP_031736624.1	2.5e-64	82.91	uncharacterized protein LOC101214249 [Cucumis sativus] >KGN62269.1 hypothetical ...	[more]

BLAST of Sed0017306 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0017306 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CRY1	1.2e-67	85.26	uncharacterized protein LOC111014019 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1HEL0	3.8e-66	82.69	uncharacterized protein LOC111462339 OS=Cucurbita moschata OX=3662 GN=LOC1114623...	[more]
A0A0A0LMK5	1.2e-64	82.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346590 PE=4 SV=1	[more]
A0A5A7VCD6	2.1e-64	82.91	Complex 1 LYR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]
A0A1S4DWJ1	2.1e-64	82.91	uncharacterized protein LOC103488569 OS=Cucumis melo OX=3656 GN=LOC103488569 PE=...	[more]

BLAST of Sed0017306 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76060.1	6.2e-45	61.04	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 72..132 e-value: 3.5E-10 score: 39.8
None	No IPR available	PANTHER	PTHR47484	COMPLEX 1 PROTEIN CONTAINING PROTEIN, EXPRESSED	coord: 8..157
None	No IPR available	CDD	cd20267	Complex1_LYR_LYRM7	coord: 74..134 e-value: 3.17726E-16 score: 66.8183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017306.1	Sed0017306.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
cellular_component	GO:0005759	mitochondrial matrix