Sed0017254 (gene) Chayote v1

Overview
NameSed0017254
Typegene
OrganismSechium edule (Chayote v1)
DescriptionSmall nuclear ribonucleoprotein E
LocationLG10: 34911697 .. 34914990 (+)
RNA-Seq ExpressionSed0017254
SyntenySed0017254
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCGTACCTACATGGCAAAATGATATTTAAACCCAAAAAATAATAATGAATTCTATTATTTTATTCCTTTGAATTAAAGGGGTGGTTTTTTTAAGGAAAAAAAAAACAGTAAAGGGGGTTCTTTTAAACCCTATAAAATTCCTTTGCCCTAATACAAAGTTCCATTCCGTTGCTGCGAGCTTCGATCTGTGAAGTGAAAGCAGTGAAGTTCGGCCTTCAATCTCTTCTCAGCTCTTCGTTGACAAATTTCTTCGAATCGGTAGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATTGTACGATTTCATTTCATTCTCGTTTTTCTTTCTTTTTTCTGCGAATTTCGCTTACACTTTTTGTTTTTCATTCAATGGATCTTGCCTCGCCTTCAGAACTTGATTTTCAGGTTTCTTCAGAGTGTAAGTTCCTTTTCATCTTCATTTCGTCTAGTTTTTCATTGTTTTTCGTTCTGAAATTGACGTGTTCAGTTCTACTTATCTTCTCCTTCCAAATTTCCAGAAAGCTCGGATTCAGATATGGCTTTTTGAGCAAAAGGACCTGAGGATCGAAGGCCGAATCATTGTAAGCTCCTTAGCCTTGTGGGATTTTGAACCATTGTTGTAATTAATAGTTTGTCTTGTTTAATGTCCGTTTAAATGTGTTATTAAAGCCTGCTGGATTTAAGTTCCCAAGGGTGTGTTTGGAGCACCGGTTTGGTTATAGTAAAAAGTTATGATAAACGGTGGATTATTATAAATGGTGTTTGAGGGGCAAGTTATTATAATAGAGATTATGATAAATGGTGTTTGAGGGGCTGGTTATGTAACAAAAAGTAATATATGTAAGGTTTAGATAAACGGGCATGCAGGTTTAGGTAACCACCGTTTATAATAAACGGTGGGGAAAACGTTGGTTAGGTTATTATAACCAACCCGGCCGTCGTCTACATAAACGGGGGCCGGAACACACCCTAAGTGTTGAATCTTCATGTGGGTTTTGTTAATAGTTTTTTTCGAATCTAGGAAAAATAAGAACGTTCCAGATAAAATGGTAGTTAGTTTAGTAATATCGGTTATTAATATCTTGAGGGCGTGGTCACCTCGGGTATACTGGAGCGAAGCTTCGATTTTCCAGTTTGAGAAAAAAAAATTGATATTTTTTTATTTATTTTGTGGAGATACAGAAAATGTCACACTAAGTTTGCACGAATTAATCTAGTGAAATGTTGGAAAGTGTAAGGGGTTTGTGCATCTTAAAATTTATCATCAAGAACAATAAGAACTAGTAAAAATAGTGGAGAGGAGAAGAAATTTCTCTAATATTTAGATATTGTTTCTATAACTACTAAAGATTTTACTCTATAGAAAAGCCAGTAACTTCTTTTGAAGGAAGAGAAACAAAAAACAAGTGTAAGAGAGAATGCTCTTAAAAATCATCTTCCCTTTGTTGATTTGGTAACACAACCCAAAGTCAACTTTCATTGCATTGAAATAAGATCAGTTTGTATTTTTTTCTTCTTCATTAGCATAGTTGTCCATCTTTGTTGATGACTAATTTTTGAAGCCATGAGTGCGCAGGCTATTTTGGAGAAATATTTGGCTTGAGATTTGTAGTTAGACCGGAAAATAAGTCTTTCGTTACAAGATTAGTTAGGGTCCTAGGGATTCTTCAAGTTAAGTTAGAAGAAAGAAATCTTCTTTTTATGTAAGATTGAAATGATAGTTTGTTTTGGGGGGGTGTAGAAAGAAAGTTTTGTTTGTGTCTTTGCAATGTGTTTTCGTTGACCTGTAATTTATTTCGGACGGTTAATATTGAGAATGAAGTTTCTTTTCTTTTTTTCCTCTATATGCGAGTGTCCAGACCAACTTACGTTACTTGGAATTTTCTCCTTACAATATTTGGATATCAAGCCTAAGGGGTGGCACAGTGATTGAAAACTTGGACTTTGAAGGTGTGCTCCTCTCTAGGTCCCAAGTTCGAGACTCACCTGTGACATTAATTCGTAGATACCTCCCGTGTCTTTATTTCTTCAATGTCTCCTGGCGCCTGGCCAAGGGACGGTGGTGGTTACCCCGAGTATAGTGGGGCGAAGTTTTGATTTCCTAGTTAAAAAAAAAACAATATTTGGATATCAAAAAAATCTATAGAAAGTTAATTTTTAGGCAGGTGATAATTATGGATTGAACTCATAAGTTTATTTTGACAATTGGAATGGAGTCTTTTGGGTGCAAAAGTAATCAACTTAGAATGGTGTTAGAGTTGTACGTATTAGTGTTGTAAATTGTCTATTGAAAAGCATGGAGATAATGTTTAGTCCACCAACGTTTCTCTCTTCCCTTCTTCCACTCTTGGACTTGGACTATTAATTTAGTGCTGATTTCTGAGTTTCACCTCCTTAGGGCTTTGACGAGTATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAACGTAAAGAAGAAGAGCAAGAAGACTCTAGGTTTGTCATTTGATCATTTACCCATTCCCATGGCCAAATTAAGGCAAACTAAAACTTTGTTTTGTCTTCTTTTATTTCAGGGAGGATATTGCTTAAAGGAGACAACATAACTCTGATGATGAACACGTAAGTCCTCTCGAATCTCTGTTTCGACGCATAATTGATCTCACCATCTCACTTCAAAAAAATTAATGAATAATATTCCAATGCTAAATTACAGGGGGAAGTGATTGTCATTTTTGCACACATTTAAGAGATTGACTTGAAAGCCTTGTGTCAATCATATCATAGAATGTTCATTTTACTGTCAATTTGTTAGCTGTTTTTGTACTCTCTATTAAAAGAAATTAGAATGTCAGCCTTTTGAGAGATTGTGGCCCTTGCTCTGAACTCACCGGATCTCCTATTGCTTAGATCTTTGTATTCTGTTTTCATATATTTTCAACTCTATGATACATGCTAGATTTGAATATCAGTTTCTCAATTGCATTTTTGAACTGCTGAAAAGTTTGCGAATATATGAACAATGAAGCAAAAGTGAATGTTTTATAGAGGGTATAGACTTAAAGGGCTTTGGAGTGCATAAGATGATGAGTTTAATCCATGGTATGCCATGTGACATTAATCGAGGTGCGCGAAAGCCGGCCCGGACAGTAGGGTATATATCTCTAAAGAAGAGGGGAGAGGTTTGGATCTCTGCATCTACCTATTTTGATGGTTGAACTAGAAGAAAGTGTTGAAATCATATATCAAATGTATGATAACCAAGCTAAGATGTACCCTAAACCCTAAACCCTACATGTAC

mRNA sequence

GCCGTACCTACATGGCAAAATGATATTTAAACCCAAAAAATAATAATGAATTCTATTATTTTATTCCTTTGAATTAAAGGGGTGGTTTTTTTAAGGAAAAAAAAAACAGTAAAGGGGGTTCTTTTAAACCCTATAAAATTCCTTTGCCCTAATACAAAGTTCCATTCCGTTGCTGCGAGCTTCGATCTGTGAAGTGAAAGCAGTGAAGTTCGGCCTTCAATCTCTTCTCAGCTCTTCGTTGACAAATTTCTTCGAATCGGTAGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATTAACTTGATTTTCAGGTTTCTTCAGAGTAAAGCTCGGATTCAGATATGGCTTTTTGAGCAAAAGGACCTGAGGATCGAAGGCCGAATCATTGGCTTTGACGAGTATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAACGTAAAGAAGAAGAGCAAGAAGACTCTAGGGAGGATATTGCTTAAAGGAGACAACATAACTCTGATGATGAACACGGGGAAGTGATTGTCATTTTTGCACACATTTAAGAGATTGACTTGAAAGCCTTGTGTCAATCATATCATAGAATGTTCATTTTACTGTCAATTTGTTAGCTGTTTTTGTACTCTCTATTAAAAGAAATTAGAATGTCAGCCTTTTGAGAGATTGTGGCCCTTGCTCTGAACTCACCGGATCTCCTATTGCTTAGATCTTTGTATTCTGTTTTCATATATTTTCAACTCTATGATACATGCTAGATTTGAATATCAGTTTCTCAATTGCATTTTTGAACTGCTGAAAAGTTTGCGAATATATGAACAATGAAGCAAAAGTGAATGTTTTATAGAGGGTATAGACTTAAAGGGCTTTGGAGTGCATAAGATGATGAGTTTAATCCATGGTATGCCATGTGACATTAATCGAGGTGCGCGAAAGCCGGCCCGGACAGTAGGGTATATATCTCTAAAGAAGAGGGGAGAGGTTTGGATCTCTGCATCTACCTATTTTGATGGTTGAACTAGAAGAAAGTGTTGAAATCATATATCAAATGTATGATAACCAAGCTAAGATGTACCCTAAACCCTAAACCCTACATGTAC

Coding sequence (CDS)

ATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATTAACTTGATTTTCAGGTTTCTTCAGAGTAAAGCTCGGATTCAGATATGGCTTTTTGAGCAAAAGGACCTGAGGATCGAAGGCCGAATCATTGGCTTTGACGAGTATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAACGTAAAGAAGAAGAGCAAGAAGACTCTAGGGAGGATATTGCTTAAAGGAGACAACATAACTCTGATGATGAACACGGGGAAGTGA

Protein sequence

MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLMMNTGK
Homology
[Close]
BLAST of Sed0017254 vs. NCBI nr
Match: XP_003597961.1 (small nuclear ribonucleoprotein E [Medicago truncatula] >XP_003615807.1 small nuclear ribonucleoprotein E [Medicago truncatula] >XP_019463643.1 PREDICTED: small nuclear ribonucleoprotein E-like [Lupinus angustifolius] >AES68212.1 small nuclear ribonucleoprotein [Medicago truncatula] >AES98765.1 small nuclear ribonucleoprotein [Medicago truncatula] >AFK37227.1 unknown [Medicago truncatula] >RHN56601.1 putative small nuclear ribonucleoprotein E [Medicago truncatula] >RHN76562.1 putative small nuclear ribonucleoprotein E [Medicago truncatula])

HSP 1 Score: 171.8 bits (434), Expect = 2.7e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 89
          NVKKKSKKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Sed0017254 vs. NCBI nr
Match: XP_022135003.1 (small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022929068.1 small nuclear ribonucleoprotein E-like [Cucurbita moschata] >XP_022972120.1 small nuclear ribonucleoprotein E-like [Cucurbita maxima] >XP_023529379.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >KAG6587777.1 Small nuclear ribonucleoprotein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.8 bits (434), Expect = 2.7e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 89
          N+KKKSKKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Sed0017254 vs. NCBI nr
Match: XP_020227736.1 (small nuclear ribonucleoprotein E [Cajanus cajan])

HSP 1 Score: 171.4 bits (433), Expect = 3.5e-39
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 89
          N+KKKSKKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Sed0017254 vs. NCBI nr
Match: XP_022156313.1 (small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022156314.1 small nuclear ribonucleoprotein E-like [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 4.5e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 89
          NVKKKS+KTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Sed0017254 vs. NCBI nr
Match: XP_022932078.1 (small nuclear ribonucleoprotein E-like [Cucurbita moschata] >XP_022972899.1 small nuclear ribonucleoprotein E-like [Cucurbita maxima] >XP_023520877.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >XP_023520878.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >KAG6607609.1 Small nuclear ribonucleoprotein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170.6 bits (431), Expect = 5.9e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 89
          NVKKKSKK+LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKSLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Sed0017254 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Sed0017254 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Sed0017254 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Sed0017254 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Sed0017254 vs. ExPASy Swiss-Prot
Match: A1XQR9 (Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Sed0017254 vs. ExPASy TrEMBL
Match: G7IMA2 (Small nuclear ribonucleoprotein E OS=Medicago truncatula OX=3880 GN=11406496 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 89
          NVKKKSKKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Sed0017254 vs. ExPASy TrEMBL
Match: A0A6J1I7N4 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111470751 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 89
          N+KKKSKKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Sed0017254 vs. ExPASy TrEMBL
Match: A0A6J1C3K6 (Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111007114 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 89
          N+KKKSKKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Sed0017254 vs. ExPASy TrEMBL
Match: A0A6J1EQZ2 (Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111435765 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 89
          N+KKKSKKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Sed0017254 vs. ExPASy TrEMBL
Match: A0A6J1DT21 (Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111023239 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.2e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 89
          NVKKKS+KTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Sed0017254 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 159.8 bits (403), Expect = 9.7e-40
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 89
          ++KK ++K LGRILLKGDNITLMMNTGK
Sbjct: 61 SIKKNTRKPLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Sed0017254 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 159.8 bits (403), Expect = 9.7e-40
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 89
          ++KKK++K LGRILLKGDNITLMMN GK
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNAGK 88

[Close]
BLAST of Sed0017254 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 127.5 bits (319), Expect = 5.3e-30
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKTLG 72
          ++KK ++K LG
Sbjct: 61 SIKKNTRKPLG 71

[Close]
BLAST of Sed0017254 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKT--L 72
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + ++   L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 69

Query: 73 GRILLKGDNITLMMNTG 88
           +ILL G+NI +++  G
Sbjct: 70 DQILLNGNNIAILVPGG 82

The following BLAST results are available for this feature:
BLAST of Sed0017254 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_003597961.12.7e-3998.86small nuclear ribonucleoprotein E [Medicago truncatula] >XP_003615807.1 small nu... [more]
XP_022135003.12.7e-3998.86small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022929068.1 sma... [more]
XP_020227736.13.5e-3997.73small nuclear ribonucleoprotein E [Cajanus cajan][more]
XP_022156313.14.5e-3998.86small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022156314.1 sma... [more]
XP_022932078.15.9e-3998.86small nuclear ribonucleoprotein E-like [Cucurbita moschata] >XP_022972899.1 smal... [more]
BLAST of Sed0017254 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4FUI26.4e-2871.60Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1[more]
P623036.4e-2871.60Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1[more]
P623046.4e-2871.60Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1[more]
P623056.4e-2871.60Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1[more]
A1XQR96.4e-2871.60Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1[more]
BLAST of Sed0017254 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
G7IMA21.3e-3998.86Small nuclear ribonucleoprotein E OS=Medicago truncatula OX=3880 GN=11406496 PE=... [more]
A0A6J1I7N41.3e-3998.86Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111470751 PE... [more]
A0A6J1C3K61.3e-3998.86Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111007114... [more]
A0A6J1EQZ21.3e-3998.86Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111435765 ... [more]
A0A6J1DT212.2e-3998.86Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111023239... [more]
BLAST of Sed0017254 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G18740.19.7e-4090.91Small nuclear ribonucleoprotein family protein [more]
AT4G30330.19.7e-4090.91Small nuclear ribonucleoprotein family protein [more]
AT2G18740.25.3e-3088.73Small nuclear ribonucleoprotein family protein [more]
AT5G48870.12.0e-0535.06Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 19..85
e-value: 8.4E-18
score: 75.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 20..83
e-value: 3.0E-18
score: 65.3
NoneNo IPR availableGENE3D2.30.30.100coord: 1..86
e-value: 6.9E-42
score: 143.2
NoneNo IPR availablePANTHERPTHR11193:SF10SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 1..87
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 1..87
IPR027078Small nuclear ribonucleoprotein ECDDcd01718Sm_Ecoord: 7..85
e-value: 2.19152E-51
score: 153.478
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 12..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0017254.1Sed0017254.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding