Sed0017242 (gene) Chayote v1

Overview
NameSed0017242
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRibonuclease H2 subunit B
LocationLG03: 9705103 .. 9710307 (+)
RNA-Seq ExpressionSed0017242
SyntenySed0017242
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTGGATTCCTGCTTTCCCTTCGCCATCCAAAATCAGGTAATTTAAAGGGCAATTTGTCACCCCATCTTCCACCTTGGTGATAACGATTTGTTACATGTTCCCTTGGTTACATCCGTTTGGACTTCGAAAATAGAAAAATGAAGAAGGAAAGAAAACTGTCGAGTTAGAATACTAAATTTGCATGATAAGGATAATCAATTATGAGGTAAGTGCTAGGTAACACTCTTTCCCTCTAAAAACAGTCTTCATCTTTTTCTGTTTGATGGAGCTTGTTTGCAACTAGAGGGAAAAGATAACAATCTGAATACTATATTTGGTTAACTATCATATTGATTGGTGACTTGCTTATTTAAATGAAACCATCTTTAAACATATTTAAATGAAACCAGCTTTAAACATAAATTTATCACAGAAATTTAAGAAAGTACAAGCTTTAGTCAATACTGACTGATCATATTTTTAAAGAAAGATTCTATTCAATGAGTATATTTGTTATACTTTCTTTTACAGGAAATACAACATGCTTCTTACATGTAAATGAGACGCTTGAGGAAATTCACTGGTTTAAGCAGCCATATTCATCTTGGTTTTTGGGAGACTATATTACTGAGGGTAACTGAGCTACGTTGCACTGAAAATCTTTTTTGTTGATGGCTTACTTCTTAAGCTTACTACATTCTGTCTAATGGTTTAATCTCCTTAAGATGCAGCTAATTCAAGTATAATTTATTGAAATAAGCTATACAACACAATTAATTTTGAATAAACAATTGGGAACCAGATAGTGTGCACGTGAATGTAGTTGGATCTTATGTATGCTGTAAAATCATCGAAGAGTGTTTTTTTTTTGCATTTTTTCTCTTCCTTTGCTCAAGGACATGGTTATTTTGGTAGCTAGTTTTTTATTTTGTCCATGTCTCAGCAACTCTAACTGTTCAACGCTGTTCCCATTACCTTGCTGTCATACTTAGGAACTTAATCTGTATTATTGTGTCTACAGATGGTCGTCTGTATTCTGCCACTCCAGTAGATCCTGTATTTATTTTCTTGCCCATTTTTGAGGAAGCTAGAATGAAGGTACTCCTACAGTCTTACTGCAAAATCTGTATGATATCATAATTGAGAGGTGGGAAATAATTATACGATTTATACCATTGTTTTGCAGTCATTAACAGTAGTAGTCGTGGTATAACCTTGCAATCTGCTTGGAAATTAGAAAGACAATTTCGAATTTTCCCTGGTTGCTTTGCTATTTATATGTCTATTTCTTAATCGTCAATTGGTTGACCTAATTGTGAGGGCTACAAAGCTAGTTGATTTTGTTGTCCATTCAAACTCTTTATTATATACATAATACATCATTTTAAAAGGCTCACTTAAGCATGTTAGGAGCAAGGCACACGTTTAGCGCTTTGCCTTGAATAGGCGAGACTTTTGTAAAAAAATGTGCTCTAAGTGCACAAAAATAAGTTTAACTAACCCTTAATGCAAAAATCCTTGTGTTTAGGGTTTTTTTTGTTCTTTACCAACCCTTAGAGTTTTTTTTTTCTTTTTTCTTTTTTTTCCCCCTTTTTTTAAAAAAAATAAATATTCCAACTCCAATTATATTATCTATTCTTTATGAATGTTCTTACATGTAGTATGGCTCACTGAAAAAGTTCTGTGCCTTTTGTTGCGCCGTATGCCTAAGTCTCGGTAGGCTATTGCGCCTTAGTGCACCTTGAGCTTTTAAAAAAACTAGTTATAACTACTGATATTTTCTCATAATTTAATGCTAATTGTTGAGTTTTTTTTTTTTTAAAAAGTAGTTTCAAATTCTTGCAGAAGGGAGATGATCTTGGGAAATTCAGGCAATTGGATGACATAATGTTCATCAATGGGTATCCTGGATATCAACATTTACTTTCTGTTGCAGAGAAGTCTATGCAAGTAGTCTGTGAGGTGCAAGGTGGGCCTGCAGTTCATAGAATTTGAAAAAAAAAAGTTCAATCATGTCTACAATCTATTCTTTCCATTTATGCTACCTTGTCTTCTGCAGAAGTTGGATCGTCAAGGTTTTTTAGGCTCGATGATTCAAAAGTTCTGGCATGGTTATATCACAAGGTTAGTGCTCATCGTCTCCACTATTTTCAAAATTTTAAAATGTTCCACATATTGATGAGAATAATTAACAATACATGTCATGATCAGCATATTCATATAGATTTAGCATTGGTGATTGACAAATCCTATTTTACATCAGTTTGAAGGAACTAAAATGCTGACCCATCTTTCATATTGGCTACCATCCAATATTTAACATGGAAGTTTCTAGCAGCCAATTCTTCATGATGTAGTACTCTTTGCCAACTTTACCTAGCTTTTCTATTTCCATAAGGCAACTACTTTTATTCTCTATAATATTTTCAAGAATAGGCTGTGTGGATTCTCTTATTTATTATTTTATTTTATGGTTTTTCATTGCAGGTACATCTGCTGAAAAAAACTCTGTGCACTCTGGATAAAAACTATGCTGCAAGAGAAGAAAAAGATACATGTATAATTCTGGGGAGAGGGCAACTTATAACCCCTTTATGTCGTTTGTTTAATATCTGCAGCTGGCTTTCTTTCATTTTCCTCTTCATCAGTATAGTGTCACACTGTAGAACTAGAGCATGCATTAAAATATCTGGCGTATCGGAAAAAACTATATGAAGCGTCTGTAGTTTTGCATTACCTCAGTATGATTTGATTAGTCAGAAGCTAAGACCCTGTTTGATGACCATTTTGTTTTTCGTTTTTTGTTTATGAAATTTAAGCCTACAACAACTACCTTACTATACCTTTTTTCTTATTTGGATATCTACATCTTACCTATATTTTAATAAACAAAACCAAAATTTGTAAACAAAAAAAAGTAGCTTCCAAAAGCTTGTTTTTGTTTTTGAAATTTGGTTAGTATTCACCTACTTTCTTAAGGAAATATGGATACATTGTAGGAAAGATGGAGCACATGGTAGGAAATTTGAGTAGAAATAAGCTTAAATTTCATAAACAAAAAACAAAAAACCAAATGGTTATCAAACGGGGCCTAAGATATTCAGACATCAAAGAGAAATTCCATAACCTGAGACCTTTGTTGAACTTGATCATCATCATATGAAAAAGCTACTGCTAATTGATGAAACTCTATTTGTTTCATGTGAAATTTTCTTATAGACATGTGAATAAATATTGTGGCGCTAATTTTCTTATGTAAGATACTGGACTTTGGGAAACTGCTATGGATTTAAAAAGAACATGAAGGAATGAACAAACTATTCGTTAAGGAAAAAGAAACAAAATTCATGAACTGAACGGCTTTTCTGAGGTCGAAAGAAAGGTCCTTTGTGTGCGAAAGCAACATCAAGTGGTATAGGCACTGTCATTGTATTCATTTTACATAAAAACTGCAGGAAAGTTTGTTTTGGTTTAGTATAGTTCCTTGGTTGCAAGTATTCGTGTTCGAACAAATTGATGGCTTCTCTTACATCTTTTTTTTTTTGGTACAGTAAGCGATGCCGTTTCAATATTAGGGGAATACTTGAAGGACGAACCTTGGTTGAAGCTTTTATGTGACCATCTCAAGTATTTAAACCTCTACTACTTTAGAGTTCCATAAACTTGGCTTGGTATTTGATTGTCCCGAGGCCGCACGCTGCTGATTTTGTTTGCAGGTTAAATTTTGCTGAAACAATAAAAAAGGCATCGGATGCAGAAAAGGCTCCTATAAGCATAGATCACAATTTTGATTCTACCTCACAGGTACAATTCCCAATGACTTGTAATTGCATCAATCTTCTATTTTCCTCTTCCTTACGTGCCCCTTATGATTATTCGTATCTGATGTGTGGTCATGTTGAAATATTCCAAATCATGTTTTATGATTTTGGTCCAAAGATGTTTTCATAAGCCAATCGAGAATTGGTCTTAGTACGTAGAAAACGGTTAAGTTTCTTTTTTTCCATTTTACCTTATCTTGCTTTTAGACAAATGATTTACTTTGAGGATGGGAGGTATTTGGGTGGTGGGAGGGGAGCTGGTGGTGCATGAATTTCAAAATGTCTGATAATGTTCCCTGATTGTCAAAGTCACATTTCAAATTTATCTTGAAAGGGGGTGTTTGATAAAAAAAATCATTTCTAAGGGAATGTTTGATATTTGGTTTTGGGGAGGAGTTACAAATGAGCATTTAGCCCTCTTAGAAAAACCAGATCCAAACGAGTTATTACAACCACTCAAAATAAATACTCATTTCTAATCATTCAAAATAACTCTCTTTTCAAAACCATTCATTTCTTTTTTTTAAAAAAATTCAATAACATTTCGGACTTCAACCTGTAACCAACTGGTTATTATTTAATACATAATACCACTAGCGTATTACTCAATTTGGCACTCATTTCGGCACTCATTTCTACAATCACTCACTACAAAACCCATATCCAAACAAATTATCGGTTGCAACTCCTCTACAAAAATCCACATCCAAACAAGCTATATCCTGCAACTGCTTTACAATAATCCACATCCAAACGAGCTATTACTACAACCTCAATTTTTAATCATTTTCAATTTTCACTCATAGTAAATCACTTGTCTAAAAGCATGATAAAGAGAATACTTTTCAATCACTCAATTTTCAATTTTCAACCATTTCTCAAAAAAAAAAAATAATAATCAAAATAACTCTTTATTTAATCACTCAAAATAACTCCTCATGCAACCTACTTGTCCAAACACCCCTCAGGGCTTTGAAGCCATTTTAGAAAAAAAGGCTAGTTTTAAGCTCAAAACAGTACTAAGTAATTATCTCAAATTCATATAGGATTGATTTCTTAGATTTTCACGTATCTAGATATTAATTTTCTAGACAGATGTAGTAGTTTAAATAGTTGTCTCGTGAGATTAGTTGAAGTACCCATACACTCACAAATATAAAAAGGAAAGATAAAAAGAATTCTTCTAGGGTTGTGTTCAAATATATACATTTCTTGGCTTTGAATCTTGATTTTTTTTTTTCCTTCTCAAATTGTTTGTGCAACTTACTTATGGCAGGATAAGAGTAGGAGTGGCGCAAAGAATACAAGAAATGGAAAGCAAGCTAAGAAGCCTAAGATGGAGACAGAATCACGGAACATCAAGGACATGTTTTCAAGGGCTACCAGAAAAAAAAGCTGA

mRNA sequence

ATGGCACTGGATTCCTGCTTTCCCTTCGCCATCCAAAATCAGGAAATACAACATGCTTCTTACATTTTCAAATTCTTGCAGAAGGGAGATGATCTTGGGAAATTCAGGCAATTGGATGACATAATGTTCATCAATGGGTATCCTGGATATCAACATTTACTTTCTGTTGCAGAGAAGTCTATGCAAGTAGTCTGTGAGGTGCAAGAAGTTGGATCGTCAAGGTTTTTTAGGCTCGATGATTCAAAAGTTCTGGCATGGTTATATCACAAGGTACATCTGCTGAAAAAAACTCTGTGCACTCTGGATAAAAACTATGCTGCAAGAGAAGAAAAAGATACATTAAGCGATGCCGTTTCAATATTAGGGGAATACTTGAAGGACGAACCTTGGTTGAAGCTTTTATGTGACCATCTCAAGTTAAATTTTGCTGAAACAATAAAAAAGGCATCGGATGCAGAAAAGGCTCCTATAAGCATAGATCACAATTTTGATTCTACCTCACAGGATAAGAGTAGGAGTGGCGCAAAGAATACAAGAAATGGAAAGCAAGCTAAGAAGCCTAAGATGGAGACAGAATCACGGAACATCAAGGACATGTTTTCAAGGGCTACCAGAAAAAAAAGCTGA

Coding sequence (CDS)

ATGGCACTGGATTCCTGCTTTCCCTTCGCCATCCAAAATCAGGAAATACAACATGCTTCTTACATTTTCAAATTCTTGCAGAAGGGAGATGATCTTGGGAAATTCAGGCAATTGGATGACATAATGTTCATCAATGGGTATCCTGGATATCAACATTTACTTTCTGTTGCAGAGAAGTCTATGCAAGTAGTCTGTGAGGTGCAAGAAGTTGGATCGTCAAGGTTTTTTAGGCTCGATGATTCAAAAGTTCTGGCATGGTTATATCACAAGGTACATCTGCTGAAAAAAACTCTGTGCACTCTGGATAAAAACTATGCTGCAAGAGAAGAAAAAGATACATTAAGCGATGCCGTTTCAATATTAGGGGAATACTTGAAGGACGAACCTTGGTTGAAGCTTTTATGTGACCATCTCAAGTTAAATTTTGCTGAAACAATAAAAAAGGCATCGGATGCAGAAAAGGCTCCTATAAGCATAGATCACAATTTTGATTCTACCTCACAGGATAAGAGTAGGAGTGGCGCAAAGAATACAAGAAATGGAAAGCAAGCTAAGAAGCCTAAGATGGAGACAGAATCACGGAACATCAAGGACATGTTTTCAAGGGCTACCAGAAAAAAAAGCTGA

Protein sequence

MALDSCFPFAIQNQEIQHASYIFKFLQKGDDLGKFRQLDDIMFINGYPGYQHLLSVAEKSMQVVCEVQEVGSSRFFRLDDSKVLAWLYHKVHLLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAETIKKASDAEKAPISIDHNFDSTSQDKSRSGAKNTRNGKQAKKPKMETESRNIKDMFSRATRKKS
Homology
[Close]
BLAST of Sed0017242 vs. NCBI nr
Match: XP_023546639.1 (ribonuclease H2 subunit B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321.6 bits (823), Expect = 4.9e-84
Identity = 160/183 (87.43%), Postives = 174/183 (95.08%), Query Frame = 0 

Query: 26  LQKGDDLGKFRQLDDIMFINGYPGYQHLLSVAEKSMQVVCEVQEVGSSRFFRLDDSKVLA 85
           ++KGDD GKFRQLDDIMFINGYPGY HLLSVAEKSMQVVCEV+EVGSS+FFRLDDSKVLA
Sbjct: 95  MKKGDDPGKFRQLDDIMFINGYPGYLHLLSVAEKSMQVVCEVKEVGSSKFFRLDDSKVLA 154

Query: 86  WLYHKVHLLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAET 145
           WLYHKV  LKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAE 
Sbjct: 155 WLYHKVCQLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAEA 214

Query: 146 IKKASDAEKAPISIDHNFDSTSQDKSRSGAKNTRNGKQAKKPKMETESRNIKDMFSRATR 205
            +KASDAEK P+SI++NFDS SQDK+RSGAKNTRNGKQAKKPK+ETESRNIKDMFS+A +
Sbjct: 215 TRKASDAEKPPLSIENNFDSISQDKTRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIK 274

Query: 206 KKS 209
           +K+
Sbjct: 275 RKT 277

[Close]
BLAST of Sed0017242 vs. NCBI nr
Match: KAG7029739.1 (Ribonuclease H2 subunit B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 321.2 bits (822), Expect = 6.4e-84
Identity = 159/183 (86.89%), Postives = 174/183 (95.08%), Query Frame = 0 

Query: 26  LQKGDDLGKFRQLDDIMFINGYPGYQHLLSVAEKSMQVVCEVQEVGSSRFFRLDDSKVLA 85
           ++KGDD GKFRQLDDIMFINGYPGY HLLSVAEKSMQVVCEV+E+GSS+FFRLDDSKVLA
Sbjct: 95  MKKGDDPGKFRQLDDIMFINGYPGYLHLLSVAEKSMQVVCEVKEIGSSKFFRLDDSKVLA 154

Query: 86  WLYHKVHLLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAET 145
           WLYHKV  LKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAE 
Sbjct: 155 WLYHKVCQLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAEA 214

Query: 146 IKKASDAEKAPISIDHNFDSTSQDKSRSGAKNTRNGKQAKKPKMETESRNIKDMFSRATR 205
            +KASDAEK P+SI++NFDS SQDK+RSGAKNTRNGKQAKKPK+ETESRNIKDMFS+A +
Sbjct: 215 TRKASDAEKPPLSIENNFDSISQDKTRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIK 274

Query: 206 KKS 209
           +K+
Sbjct: 275 RKT 277

[Close]
BLAST of Sed0017242 vs. NCBI nr
Match: KAG6598802.1 (Ribonuclease H2 subunit B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 321.2 bits (822), Expect = 6.4e-84
Identity = 159/183 (86.89%), Postives = 174/183 (95.08%), Query Frame = 0 

Query: 26  LQKGDDLGKFRQLDDIMFINGYPGYQHLLSVAEKSMQVVCEVQEVGSSRFFRLDDSKVLA 85
           ++KGDD GKFRQLDDIMFINGYPGY HLLSVAEKSMQVVCEV+E+GSS+FFRLDDSKVLA
Sbjct: 116 MKKGDDPGKFRQLDDIMFINGYPGYLHLLSVAEKSMQVVCEVKEIGSSKFFRLDDSKVLA 175

Query: 86  WLYHKVHLLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAET 145
           WLYHKV  LKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAE 
Sbjct: 176 WLYHKVCQLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAEA 235

Query: 146 IKKASDAEKAPISIDHNFDSTSQDKSRSGAKNTRNGKQAKKPKMETESRNIKDMFSRATR 205
            +KASDAEK P+SI++NFDS SQDK+RSGAKNTRNGKQAKKPK+ETESRNIKDMFS+A +
Sbjct: 236 TRKASDAEKPPLSIENNFDSISQDKTRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIK 295

Query: 206 KKS 209
           +K+
Sbjct: 296 RKT 298

[Close]
BLAST of Sed0017242 vs. NCBI nr
Match: XP_022131593.1 (ribonuclease H2 subunit B [Momordica charantia])

HSP 1 Score: 320.9 bits (821), Expect = 8.4e-84
Identity = 163/184 (88.59%), Postives = 176/184 (95.65%), Query Frame = 0 

Query: 26  LQKGDDLGKFRQLDDIMFINGYPGYQHLLSVAEKSMQVVCEVQEVGSSRFFRLDDSKVLA 85
           ++K DD GKFRQLDDIMFINGYPGYQ LLSVAEKSMQVVCEV+EVGSSRFFRLDDSKVLA
Sbjct: 95  MKKRDDPGKFRQLDDIMFINGYPGYQRLLSVAEKSMQVVCEVKEVGSSRFFRLDDSKVLA 154

Query: 86  WLYHKVHLLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAET 145
           WLYHKV  LKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAE 
Sbjct: 155 WLYHKVCQLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAEA 214

Query: 146 IKKASDAEKAPISIDHNFDST-SQDKSRSGAKNTRNGKQAKKPKMETESRNIKDMFSRAT 205
           I+KASDAEKAPISI++NFDS  SQDKSRSGAKNTRNGKQ+KKPK+ET+SRNIKDMFS+AT
Sbjct: 215 IRKASDAEKAPISIENNFDSNISQDKSRSGAKNTRNGKQSKKPKVETQSRNIKDMFSKAT 274

Query: 206 RKKS 209
           ++K+
Sbjct: 275 KRKN 278

[Close]
BLAST of Sed0017242 vs. NCBI nr
Match: XP_022962545.1 (ribonuclease H2 subunit B [Cucurbita moschata])

HSP 1 Score: 318.5 bits (815), Expect = 4.1e-83
Identity = 159/183 (86.89%), Postives = 173/183 (94.54%), Query Frame = 0 

Query: 26  LQKGDDLGKFRQLDDIMFINGYPGYQHLLSVAEKSMQVVCEVQEVGSSRFFRLDDSKVLA 85
           ++KGDD GKFRQLDDIMFINGYP Y HLLSVAEKSMQVVCEV+EVGSS+FFRLDDSKVLA
Sbjct: 95  MKKGDDPGKFRQLDDIMFINGYPEYLHLLSVAEKSMQVVCEVKEVGSSKFFRLDDSKVLA 154

Query: 86  WLYHKVHLLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAET 145
           WLYHKV  LKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAE 
Sbjct: 155 WLYHKVCQLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAEA 214

Query: 146 IKKASDAEKAPISIDHNFDSTSQDKSRSGAKNTRNGKQAKKPKMETESRNIKDMFSRATR 205
            +KASDAEK P+SI++NFDS SQDK+RSGAKNTRNGKQAKKPK+ETESRNIKDMFS+A +
Sbjct: 215 TRKASDAEKPPLSIENNFDSISQDKTRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIK 274

Query: 206 KKS 209
           +K+
Sbjct: 275 RKT 277

[Close]
BLAST of Sed0017242 vs. ExPASy TrEMBL
Match: A0A6J1BTT6 (Ribonuclease H2 subunit B OS=Momordica charantia OX=3673 GN=LOC111004733 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 4.0e-84
Identity = 163/184 (88.59%), Postives = 176/184 (95.65%), Query Frame = 0 

Query: 26  LQKGDDLGKFRQLDDIMFINGYPGYQHLLSVAEKSMQVVCEVQEVGSSRFFRLDDSKVLA 85
           ++K DD GKFRQLDDIMFINGYPGYQ LLSVAEKSMQVVCEV+EVGSSRFFRLDDSKVLA
Sbjct: 95  MKKRDDPGKFRQLDDIMFINGYPGYQRLLSVAEKSMQVVCEVKEVGSSRFFRLDDSKVLA 154

Query: 86  WLYHKVHLLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAET 145
           WLYHKV  LKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAE 
Sbjct: 155 WLYHKVCQLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAEA 214

Query: 146 IKKASDAEKAPISIDHNFDST-SQDKSRSGAKNTRNGKQAKKPKMETESRNIKDMFSRAT 205
           I+KASDAEKAPISI++NFDS  SQDKSRSGAKNTRNGKQ+KKPK+ET+SRNIKDMFS+AT
Sbjct: 215 IRKASDAEKAPISIENNFDSNISQDKSRSGAKNTRNGKQSKKPKVETQSRNIKDMFSKAT 274

Query: 206 RKKS 209
           ++K+
Sbjct: 275 KRKN 278

[Close]
BLAST of Sed0017242 vs. ExPASy TrEMBL
Match: A0A6J1HFF3 (Ribonuclease H2 subunit B OS=Cucurbita moschata OX=3662 GN=LOC111462943 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.0e-83
Identity = 159/183 (86.89%), Postives = 173/183 (94.54%), Query Frame = 0 

Query: 26  LQKGDDLGKFRQLDDIMFINGYPGYQHLLSVAEKSMQVVCEVQEVGSSRFFRLDDSKVLA 85
           ++KGDD GKFRQLDDIMFINGYP Y HLLSVAEKSMQVVCEV+EVGSS+FFRLDDSKVLA
Sbjct: 95  MKKGDDPGKFRQLDDIMFINGYPEYLHLLSVAEKSMQVVCEVKEVGSSKFFRLDDSKVLA 154

Query: 86  WLYHKVHLLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAET 145
           WLYHKV  LKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAE 
Sbjct: 155 WLYHKVCQLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAEA 214

Query: 146 IKKASDAEKAPISIDHNFDSTSQDKSRSGAKNTRNGKQAKKPKMETESRNIKDMFSRATR 205
            +KASDAEK P+SI++NFDS SQDK+RSGAKNTRNGKQAKKPK+ETESRNIKDMFS+A +
Sbjct: 215 TRKASDAEKPPLSIENNFDSISQDKTRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIK 274

Query: 206 KKS 209
           +K+
Sbjct: 275 RKT 277

[Close]
BLAST of Sed0017242 vs. ExPASy TrEMBL
Match: A0A6J1K9Q1 (Ribonuclease H2 subunit B OS=Cucurbita maxima OX=3661 GN=LOC111491930 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.4e-81
Identity = 156/183 (85.25%), Postives = 171/183 (93.44%), Query Frame = 0 

Query: 26  LQKGDDLGKFRQLDDIMFINGYPGYQHLLSVAEKSMQVVCEVQEVGSSRFFRLDDSKVLA 85
           ++KGDD GKFRQLDDIMFINGYPGY HLLSVAEKSMQVVCEV+EVGSS+FFRLDDSKVLA
Sbjct: 95  MKKGDDPGKFRQLDDIMFINGYPGYLHLLSVAEKSMQVVCEVKEVGSSKFFRLDDSKVLA 154

Query: 86  WLYHKVHLLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAET 145
           WLYHKV  LKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAE 
Sbjct: 155 WLYHKVCQLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAEA 214

Query: 146 IKKASDAEKAPISIDHNFDSTSQDKSRSGAKNTRNGKQAKKPKMETESRNIKDMFSRATR 205
            ++ASDAEK P+ I++NFDS SQDK+RSGAKNTRNGKQAK  K+ETESRNIKDMFS+A +
Sbjct: 215 TRQASDAEKPPLRIENNFDSISQDKTRSGAKNTRNGKQAKNLKVETESRNIKDMFSKAIK 274

Query: 206 KKS 209
           +K+
Sbjct: 275 RKT 277

[Close]
BLAST of Sed0017242 vs. ExPASy TrEMBL
Match: A0A1S3BBT5 (Ribonuclease H2 subunit B OS=Cucumis melo OX=3656 GN=LOC103488218 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.5e-81
Identity = 156/182 (85.71%), Postives = 170/182 (93.41%), Query Frame = 0 

Query: 26  LQKGDDLGKFRQLDDIMFINGYPGYQHLLSVAEKSMQVVCEVQEVGSSRFFRLDDSKVLA 85
           ++KGDD GKFRQLDDIMFINGYPGY HLLS+AEKSMQVVCEV+EVGSSRFFRLDDSKVLA
Sbjct: 147 MKKGDDPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLA 206

Query: 86  WLYHKVHLLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAET 145
           WLYHKV  LKKTLCTLDKNYAAREEK+TLSDAVSILGEYLKD+PWLKLLCDHLKLNFAE 
Sbjct: 207 WLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWLKLLCDHLKLNFAEA 266

Query: 146 IKKASDAEKAPISIDHNFDSTSQDKSRSGAKNTRNGKQAKKPKMETESRNIKDMFSRATR 205
            +KASD+EKAP SI++ FDS SQDKS S AKNTRNGKQAKKPK+ETESRNIKDMFS+A +
Sbjct: 267 TRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAK 326

Query: 206 KK 208
           +K
Sbjct: 327 RK 328

[Close]
BLAST of Sed0017242 vs. ExPASy TrEMBL
Match: A0A1S3BCJ9 (Ribonuclease H2 subunit B OS=Cucumis melo OX=3656 GN=LOC103488218 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.5e-81
Identity = 156/182 (85.71%), Postives = 170/182 (93.41%), Query Frame = 0 

Query: 26  LQKGDDLGKFRQLDDIMFINGYPGYQHLLSVAEKSMQVVCEVQEVGSSRFFRLDDSKVLA 85
           ++KGDD GKFRQLDDIMFINGYPGY HLLS+AEKSMQVVCEV+EVGSSRFFRLDDSKVLA
Sbjct: 95  MKKGDDPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLA 154

Query: 86  WLYHKVHLLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAET 145
           WLYHKV  LKKTLCTLDKNYAAREEK+TLSDAVSILGEYLKD+PWLKLLCDHLKLNFAE 
Sbjct: 155 WLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWLKLLCDHLKLNFAEA 214

Query: 146 IKKASDAEKAPISIDHNFDSTSQDKSRSGAKNTRNGKQAKKPKMETESRNIKDMFSRATR 205
            +KASD+EKAP SI++ FDS SQDKS S AKNTRNGKQAKKPK+ETESRNIKDMFS+A +
Sbjct: 215 TRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAK 274

Query: 206 KK 208
           +K
Sbjct: 275 RK 276

[Close]
BLAST of Sed0017242 vs. TAIR 10
Match: AT4G20325.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-53
Identity = 103/182 (56.59%), Postives = 141/182 (77.47%), Query Frame = 0 

Query: 26  LQKGDDLGKFRQLDDIMFINGYPGYQHLLSVAEKSMQVVCEVQEVGSSRFFRLDDSKVLA 85
           ++KG++ GKFRQLD+I+F+ GYPGYQHLLS+AEK M++VC+ QEVGS +F+RLD+SKVLA
Sbjct: 98  MKKGENSGKFRQLDEILFVEGYPGYQHLLSLAEKCMEIVCQTQEVGSMKFYRLDNSKVLA 157

Query: 86  WLYHKVHLLKKTLCTLDKNYAAREEKDTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAET 145
           WL  K++ LK +L  LDKNYAA++EK TL D+VSI+GEYLK EPWLKLL DHL L F + 
Sbjct: 158 WLSCKIYCLKNSLPELDKNYAAQDEKQTLVDSVSIVGEYLKTEPWLKLLYDHLGLKFVDP 217

Query: 146 IKKASDAEKAPISIDHNFDSTSQDKSRSGAKNTRNGKQAKKPKMETESRNIKDMFSRATR 205
             K ++ E  P + ++N  S++  + ++   N + GKQ K+ K+ET S+NI+DMFSRA +
Sbjct: 218 TMKETNMENLPTANENNMASSNSIQEKA---NKKPGKQTKQAKVETGSKNIRDMFSRACK 276

Query: 206 KK 208
           KK
Sbjct: 278 KK 276

[Close]
BLAST of Sed0017242 vs. TAIR 10
Match: AT4G20325.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-22
Identity = 43/62 (69.35%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 26  LQKGDDLGKFRQLDDIMFINGYPGYQHLLSVAEKSMQVVCEVQEVGSSRFFRLDDSKVLA 85
           ++KG++ GKFRQLD+I+F+ GYPGYQHLLS+AEK M++VC+ QEVGS +F+RLD+SKVLA
Sbjct: 98  MKKGENSGKFRQLDEILFVEGYPGYQHLLSLAEKCMEIVCQTQEVGSMKFYRLDNSKVLA 157

Query: 86  WL 88
           WL
Sbjct: 158 WL 159

The following BLAST results are available for this feature:
BLAST of Sed0017242 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023546639.14.9e-8487.43ribonuclease H2 subunit B [Cucurbita pepo subsp. pepo][more]
KAG7029739.16.4e-8486.89Ribonuclease H2 subunit B [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6598802.16.4e-8486.89Ribonuclease H2 subunit B, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022131593.18.4e-8488.59ribonuclease H2 subunit B [Momordica charantia][more]
XP_022962545.14.1e-8386.89ribonuclease H2 subunit B [Cucurbita moschata][more]
BLAST of Sed0017242 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0017242 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BTT64.0e-8488.59Ribonuclease H2 subunit B OS=Momordica charantia OX=3673 GN=LOC111004733 PE=4 SV... [more]
A0A6J1HFF32.0e-8386.89Ribonuclease H2 subunit B OS=Cucurbita moschata OX=3662 GN=LOC111462943 PE=4 SV=... [more]
A0A6J1K9Q11.4e-8185.25Ribonuclease H2 subunit B OS=Cucurbita maxima OX=3661 GN=LOC111491930 PE=4 SV=1[more]
A0A1S3BBT52.5e-8185.71Ribonuclease H2 subunit B OS=Cucumis melo OX=3656 GN=LOC103488218 PE=4 SV=1[more]
A0A1S3BCJ92.5e-8185.71Ribonuclease H2 subunit B OS=Cucumis melo OX=3656 GN=LOC103488218 PE=4 SV=1[more]
BLAST of Sed0017242 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G20325.11.3e-5356.59FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT4G20325.21.5e-2269.35FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019024Ribonuclease H2 subunit B, wHTH domainPFAMPF09468RNase_H2-Ydr279coord: 34..105
e-value: 3.0E-7
score: 30.8
NoneNo IPR availableGENE3D1.10.20.120coord: 21..139
e-value: 1.0E-22
score: 82.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..180
IPR040456Ribonuclease H2 subunit BPANTHERPTHR13383RIBONUCLEASE H2 SUBUNIT Bcoord: 24..207

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0017242.1Sed0017242.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000455 enzyme-directed rRNA pseudouridine synthesis
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0032299 ribonuclease H2 complex
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding