Sed0017146 (gene) Chayote v1

Overview


Name	Sed0017146
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Superoxide dismutase [Cu-Zn]
Location	LG11: 2387313 .. 2391086 (-)
RNA-Seq Expression	Sed0017146
Synteny	Sed0017146

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCGCTACTTCAGTGTTCTCTTCATCTCTTCTCTTTCGACTCCATTGAAGAAATTCTGCGGTGAATCTGATATTTTGTAGTTGCAGTTTTTGTTTTAATTCTGTTTTGCACCGTAGATTAAAGATCGATAGCGTAAGTTGCACTTGATTTACTTTCTAGTTTCAAATTTCCATGATAGTTGCGAGTTTTTAAGTTTTTTTTTTTTTTTTTTTAATGGTTTTGATGGCCGTGTTTCATAACACATTTTCATTGCTTGTTGTTAGTATTTGGATATAGAAAGAAAAATCATGTTGTTTTTTGGAATAAAACAGGTCTTGATATTTCTAGTCCCGTTTGATAATCATTTGGTTATTTGTTTTTGAAATTTAAGTTTATTTTAACTCAAATTTCTTAAAATGTGTTCCATTTTTCCTACGATTTATCTATCTTTACTTAAGAAGGTATGTGATTGCTAACTAAATGTAAAAAAACAAAAACAAGTTTTGGAAGCTTTTTTTTTTTGTTTCTAAATTTTATTTTGGTTTCTAAAAATATAGGTAAGATGTAGATATACAAGTAATAAAAATATAGGTAAGACTTAGATATACAAGTAACAAAAAAACATAGGATAAGGTAGTTGTTGTAGGCTTAAATTTTTTTTTAAAAAAAAACTAAAAACAAAATGATTATCAAATGGGGCTTTAGTTTGTTATGGTAGGGGGACCACAAACACTATGTAAAGGGTATTGCTGTTTGCAAATAAATGAGAGCCAAATAACGATTCTCTGAATCAAACCTGTGACCATGGTGTTGAATTGGTTTACCACTAAACAATGGAACCAACGCGCTACTAACCCTCTCAGTCATACAAGGAAACTCTAAACAAAGTCCTAATCCTACCGGGAATAATAACCGAAGTTCTAATCAAAATCCTACCCGGAATAATAACTCTAACATCATGAATATATTTGAAAGTGGAATTTTTTGTAATTAGCTTATTTTACTGACTCGTATCCAATTGTACTAGTTATCTCAGCTGTTTTAATAACCTTGATTAGGTCTGAGTTCAGTTAACACGGAACAATGGTGAAAGCTGTAGCTGTTCTTGCAGTTTTTTTTGTTATTGTTCTTAATTTTGTCTGTACATTTTTCAGGTCCAACTACAGTTACAGGAAATATTTCTGGCCTTATGGCAGGGCTTCATGGCTTCCATGTTCATGCCCTTGGAGACACAACCAATGGTTGCTCATCAACTGGTATATTCTCATGAGTAACATCCTTTTAGTTATTAGATACTAAGTGTTCCTTGTAACTATTGGACATTATAACAAAACAAAGCAAATCGAATGCAGGGCCACATTTCAACCCTGAAGGCAAAGACCATGGTGCCCCTGATGATCAGAATCGTCATGTTGGTGATCTTGGAAATTTAGTTGCTGGTGATGATGGTCTGTTTAATGCTGTTTATTCCACATTTCTTTTCATTTTCTTCCTGAAGCAAATTTGAGTAGACGGGACCCTCCAAAGTATATGTCTTCTTTCATTCTTCTTTGGGATTCGGTTGAGGAAACTGAATCCCAAAGATGCAAGTTCATTTTTTTTCAATTTGAGTAAAATGTTCATTGTGGCCTTCGGTTGTGTGTTACTTTTTGCTCAGTCAATGATACGATTTAGACCTTAGTTGAAATAGAAATAGTTAGAAGGGCATATGTGCAATTAGATAGGAAGTTAGTTAGGGTTTTCAATTATAAACCGAGCGGCGGGGTGAGTGAGGAAGGCATCCAAAATATCGAGTGAAGTAGTGAGCTCTTAAGAGAATTGTTCTTATCTTTTTTTTAAACAAGAGTAATCATGCCCGTATCTAGGCCAAGCACCGGGAGACATCGAAGGAATGGAGACATGAGAGGTATGTACAAATTAATGTCACAAACTTACAAGTATGTCTCGAACCTGGGACTTCGAAGAGAACACATCTTCAAAGCCCAAGTCTTCAACCACTGTGCCATCCCTTGGGTGTTCTTATCTTTTGATATCAATATAGATTCCAAGACCTATTAAATCTTGGTTTATCTTGTATTTTCTTATCTTTTGATATCAATATAGATTTCGGGTTGTATCAGTCACATCTTGCTTGATTGGCGTTCATTTTTGTTGTAGTTGGCTCCTTTTTTGTATGCTCTCTTTTTTTTCCTCTCAATCAAAGTTGGGTATTTCACTATAAAAAGCATTACGCTGTATTCCTTGAGGAATTCAGCTTCCTCCCCCACCATCAATAGTATTATTACAACAAATATCTTTGAATTTCATGTTAAAGGATCTTTTCTTTTCCTTTTTGAGGATTAATTTGACATGACTGTATACATCTGCCGCACAGGGACTGCAACTTTCTCTATTATTGACAAGCAGGTTTGGACAATTTCATCTTTATTTGGATGCTTCACTATCACTACTAGAAGTTCAACTAGTGAGCATTTTTTTTTCTATGTTATGCAGATTTCTCTCGTTGGACCAAATTCCGTTCTTGGAAGGTCTATTGTTGTCCATGCAGATCCTGATGATCTTGGCAGGGGTAATATTGCAAATCTTCATTGCCTTCTAATAATTATCTTATAGGTTGTTTTAACTCTTAATCACTCGAGGATCGTAATGATTGACTAAATAAGTTCACTGGCATATACATGGTAAAAACAAGCACGTTTCACCTTGGAATGATTTTGATTTTCTTTGAATTCAGTTTTTGCCCCCATTTTTCACTGTATACATGCAGAACATCCTATATAGGAATTAATTTTTTACGAGTTTCCTTGACATCCAAATGTTGTAGGAAGATGTGGTATGTCCCGTGACAATAGCCGAAGTGTGCATAAGCTGAACCAGACAATCACGATTATGAAAAAAATATAGGTTTCAATAATTTTACTCAATCATAAACCATGAGCTGAAAGAATCCATGTTTGAAATATATGTTTCCCTTCAATTATTTATAAGTCTCCTTTTTGTCTCTGCACATCAAGTAGGTGAATTCCGTCAGCGAAATCTGAAGCATGATTTGTAAACTGTTGTGATCTTCTTTTCAGGTCGAACCGAACTTAGCTTAACCACTGGCAATGCGGGCGAGAGAACAGCTTGTGGTAAGTTACAGAATCATACTATTTCTTCTCATTGCTTGTTTATGATTATGCTATGCTATGCTATCGATCTATAAGAAGGCATAGGATACAACCAGCGAAGAAAAGTTTCTCATGTTCACCTGCTCACACCCCCAATTATCTTTTATTATTAGATGGCTGTGCTTATAACTAGTTAAGCTAATAAGCATTATTAAAATTCACTTTATACAATTCTGGCAAACATAATGGCTCTTGCACCTAGTGTGACTCAACTAATTTAGACATATTTTATGACCAAAAGATCAGAAATTTGAATTATGAACTCAGAATCAGAATAACCACTCTTACACTAATATTAAATCAATAACCTTTTAGAAGAAAAAAAAGAAGCTCTAGTACTGTGTTATAAAGACATTATGTGGCAAATGGCAATATTGAGTGTTGTAAGGCAAGGAAACAACATACTACAACAACTTTTGAAGCTATAAAGTGCTCCCTCTCTTTCACAATTATAGTTTTACAACTCTCATTAATAAGAGGGGATTTCCTCTTCTTCTTTTTTTATTTTTTTTATTTTTAATTTTTAAATTAATTTATTTTAATAATTTCATTGTTTCCTGTGTGTAAACATTATACGTTTTTTCCCCTTTTCTCGCAGGCGTTATTGGGCTGCAAGAGTGA

mRNA sequence

ATGCACCGCTACTTCAGTGTTCTCTTCATCTCTTCTCTTTCGACTCCATTGAAGAAATTCTGCGGTCCAACTACAGTTACAGGAAATATTTCTGGCCTTATGGCAGGGCTTCATGGCTTCCATGTTCATGCCCTTGGAGACACAACCAATGGTTGCTCATCAACTGGGCCACATTTCAACCCTGAAGGCAAAGACCATGGTGCCCCTGATGATCAGAATCGTCATGTTGGTGATCTTGGAAATTTAGTTGCTGGTGATGATGGGACTGCAACTTTCTCTATTATTGACAAGCAGATTTCTCTCGTTGGACCAAATTCCGTTCTTGGAAGGTCTATTGTTGTCCATGCAGATCCTGATGATCTTGGCAGGGGTCGAACCGAACTTAGCTTAACCACTGGCAATGCGGGCGAGAGAACAGCTTGTGGCGTTATTGGGCTGCAAGAGTGA

Coding sequence (CDS)

ATGCACCGCTACTTCAGTGTTCTCTTCATCTCTTCTCTTTCGACTCCATTGAAGAAATTCTGCGGTCCAACTACAGTTACAGGAAATATTTCTGGCCTTATGGCAGGGCTTCATGGCTTCCATGTTCATGCCCTTGGAGACACAACCAATGGTTGCTCATCAACTGGGCCACATTTCAACCCTGAAGGCAAAGACCATGGTGCCCCTGATGATCAGAATCGTCATGTTGGTGATCTTGGAAATTTAGTTGCTGGTGATGATGGGACTGCAACTTTCTCTATTATTGACAAGCAGATTTCTCTCGTTGGACCAAATTCCGTTCTTGGAAGGTCTATTGTTGTCCATGCAGATCCTGATGATCTTGGCAGGGGTCGAACCGAACTTAGCTTAACCACTGGCAATGCGGGCGAGAGAACAGCTTGTGGCGTTATTGGGCTGCAAGAGTGA

Protein sequence

MHRYFSVLFISSLSTPLKKFCGPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTACGVIGLQE

Homology

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BLAST of Sed0017146 vs. NCBI nr
Match: XP_022999148.1 (superoxide dismutase [Cu-Zn] 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 251.9 bits (642), Expect = 3.4e-63
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           GPTTV GNISGL+ GLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDD+NRHVGDLGN
Sbjct: 26  GPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDENRHVGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRG+TELSLTTGNAGER AC
Sbjct: 86  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGQTELSLTTGNAGERIAC 145

Query: 142 GVIGLQE 149
           GVIGLQE
Sbjct: 146 GVIGLQE 152

[Close]

BLAST of Sed0017146 vs. NCBI nr
Match: KAG7030279.1 (Superoxide dismutase [Cu-Zn] 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.1 bits (640), Expect = 5.8e-63
Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           GPTTV GNISGL  GLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDD+NRHVGDLGN
Sbjct: 26  GPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDENRHVGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRG+TELSLTTGNAGER AC
Sbjct: 86  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGQTELSLTTGNAGERIAC 145

Query: 142 GVIGLQE 149
           GVIGLQE
Sbjct: 146 GVIGLQE 152

[Close]

BLAST of Sed0017146 vs. NCBI nr
Match: XP_022150819.1 (superoxide dismutase [Cu-Zn] 1-like isoform X2 [Momordica charantia] >XP_022150820.1 superoxide dismutase [Cu-Zn] 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 248.4 bits (633), Expect = 3.8e-62
Identity = 118/127 (92.91%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           GPTTVTGNISGL AGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAP+D+NRHVGDLGN
Sbjct: 26  GPTTVTGNISGLQAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPEDKNRHVGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           LVAGDDGTATFSIIDKQISLV PNS++GR+IVVHADPDDLGRG+TELSLTTGNAGER AC
Sbjct: 86  LVAGDDGTATFSIIDKQISLVRPNSIVGRAIVVHADPDDLGRGQTELSLTTGNAGERVAC 145

Query: 142 GVIGLQE 149
           GVIGLQE
Sbjct: 146 GVIGLQE 152

[Close]

BLAST of Sed0017146 vs. NCBI nr
Match: XP_022946180.1 (superoxide dismutase [Cu-Zn]-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 248.1 bits (632), Expect = 4.9e-62
Identity = 120/127 (94.49%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           GPTTV GNISGL  GLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDD+NRHVGDLGN
Sbjct: 26  GPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDENRHVGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           LVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHADPDDLGRG+TELSLTTGNAGER AC
Sbjct: 86  LVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHADPDDLGRGQTELSLTTGNAGERIAC 145

Query: 142 GVIGLQE 149
           GVIGLQE
Sbjct: 146 GVIGLQE 152

[Close]

BLAST of Sed0017146 vs. NCBI nr
Match: KAG6599281.1 (Superoxide dismutase [Cu-Zn] 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248.1 bits (632), Expect = 4.9e-62
Identity = 120/127 (94.49%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           GPTTV GNISGL  GLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDD+NRHVGDLGN
Sbjct: 57  GPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDENRHVGDLGN 116

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           LVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHADPDDLGRG+TELSLTTGNAGER AC
Sbjct: 117 LVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHADPDDLGRGQTELSLTTGNAGERIAC 176

Query: 142 GVIGLQE 149
           GVIGLQE
Sbjct: 177 GVIGLQE 183

[Close]

BLAST of Sed0017146 vs. ExPASy Swiss-Prot
Match: P93258 (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.7e-55
Identity = 99/126 (78.57%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           GPTTVTGN+SGL  GLHGFHVHALGDTTNGC STGPHFNP GK+HGAP+D+ RH GDLGN
Sbjct: 26  GPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           +  GDDGTATF+IID QI L GPNS++GR++VVHADPDDLGRG  ELS  TGNAG R AC
Sbjct: 86  ITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVAC 145

Query: 142 GVIGLQ 148
           GVIGLQ
Sbjct: 146 GVIGLQ 151

[Close]

BLAST of Sed0017146 vs. ExPASy Swiss-Prot
Match: P22233 (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea OX=3562 GN=SODCC PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.0e-54
Identity = 97/126 (76.98%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           GPTTVTGN+SGL  GLHGFHVHALGDTTNGC STGPH+NP GK+HGAP+D  RH GDLGN
Sbjct: 26  GPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           +  GDDGTATF+IID QI L GPNS++GR++VVHA+PDDLGRG  ELS TTGNAG R AC
Sbjct: 86  ITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVAC 145

Query: 142 GVIGLQ 148
           G+IGLQ
Sbjct: 146 GIIGLQ 151

[Close]

BLAST of Sed0017146 vs. ExPASy Swiss-Prot
Match: Q42611 (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea OX=3707 GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 211.1 bits (536), Expect = 8.7e-54
Identity = 97/126 (76.98%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           G TTVTG +SGL  GLHGFHVHALGDTTNGC STGPHFNPEGK HGAP+D NRH GDLGN
Sbjct: 26  GTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           +  GDDGTATF+I D QI L GPNS++GR++VVHA+PDDLG+G  ELSLTTGNAG R AC
Sbjct: 86  ITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVAC 145

Query: 142 GVIGLQ 148
           G+IGLQ
Sbjct: 146 GIIGLQ 151

[Close]

BLAST of Sed0017146 vs. ExPASy Swiss-Prot
Match: P09678 (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata OX=3716 GN=SODCC PE=1 SV=2)

HSP 1 Score: 209.9 bits (533), Expect = 1.9e-53
Identity = 96/126 (76.19%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           G TTVTG +SGL  GLHGFHVHALGD TNGC STGPHFNP+GK HGAP+D NRH GDLGN
Sbjct: 26  GATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           ++ GDDGTATF+I D QI L GPNS++GR+IVVHADPDDLG+G  ELSL+TGNAG R AC
Sbjct: 86  IIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVAC 145

Query: 142 GVIGLQ 148
           G+IGLQ
Sbjct: 146 GIIGLQ 151

[Close]

BLAST of Sed0017146 vs. ExPASy Swiss-Prot
Match: Q8L5E0 (Superoxide dismutase [Cu-Zn] 2 OS=Olea europaea OX=4146 GN=OLE5 PE=1 SV=2)

HSP 1 Score: 209.5 bits (532), Expect = 2.5e-53
Identity = 94/126 (74.60%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           GPTTVTGN+SGL  GLHGFHVHALGDTTNGC STGPHFNP GK+HGAP D+NRH GDLGN
Sbjct: 26  GPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPGDENRHAGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           +  G+DGTA  +I+DKQI L GP+S++GR++VVH+DPDDLGRG  ELS +TGNAG R AC
Sbjct: 86  ITVGEDGTAAINIVDKQIPLTGPHSIIGRAVVVHSDPDDLGRGGHELSKSTGNAGGRVAC 145

Query: 142 GVIGLQ 148
           G+IGLQ
Sbjct: 146 GIIGLQ 151

[Close]

BLAST of Sed0017146 vs. ExPASy TrEMBL
Match: A0A6J1KIS8 (Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.6e-63
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           GPTTV GNISGL+ GLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDD+NRHVGDLGN
Sbjct: 26  GPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDENRHVGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRG+TELSLTTGNAGER AC
Sbjct: 86  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGQTELSLTTGNAGERIAC 145

Query: 142 GVIGLQE 149
           GVIGLQE
Sbjct: 146 GVIGLQE 152

[Close]

BLAST of Sed0017146 vs. ExPASy TrEMBL
Match: A0A6J1D9J5 (Superoxide dismutase [Cu-Zn] OS=Momordica charantia OX=3673 GN=LOC111018871 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.8e-62
Identity = 118/127 (92.91%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           GPTTVTGNISGL AGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAP+D+NRHVGDLGN
Sbjct: 26  GPTTVTGNISGLQAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPEDKNRHVGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           LVAGDDGTATFSIIDKQISLV PNS++GR+IVVHADPDDLGRG+TELSLTTGNAGER AC
Sbjct: 86  LVAGDDGTATFSIIDKQISLVRPNSIVGRAIVVHADPDDLGRGQTELSLTTGNAGERVAC 145

Query: 142 GVIGLQE 149
           GVIGLQE
Sbjct: 146 GVIGLQE 152

[Close]

BLAST of Sed0017146 vs. ExPASy TrEMBL
Match: A0A6J1G334 (Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.4e-62
Identity = 120/127 (94.49%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           GPTTV GNISGL  GLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDD+NRHVGDLGN
Sbjct: 26  GPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDENRHVGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           LVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHADPDDLGRG+TELSLTTGNAGER AC
Sbjct: 86  LVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHADPDDLGRGQTELSLTTGNAGERIAC 145

Query: 142 GVIGLQE 149
           GVIGLQE
Sbjct: 146 GVIGLQE 152

[Close]

BLAST of Sed0017146 vs. ExPASy TrEMBL
Match: A0A0A0LIH2 (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=Csa_2G013250 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.9e-62
Identity = 118/127 (92.91%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           GPT +TGNISGL AGLHGFHVHALGDTTNGC STGPHFNPEGKDHGAPDD+NRHVGDLGN
Sbjct: 26  GPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTGPHFNPEGKDHGAPDDENRHVGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           +VAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRG TELSLTTGNAGER  C
Sbjct: 86  VVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGGTELSLTTGNAGERIGC 145

Query: 142 GVIGLQE 149
           GVIGLQE
Sbjct: 146 GVIGLQE 152

[Close]

BLAST of Sed0017146 vs. ExPASy TrEMBL
Match: A0A6J1KC95 (Superoxide dismutase OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 9.0e-62
Identity = 121/131 (92.37%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           GPTTV GNISGL+ GLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDD+NRHVGDLGN
Sbjct: 26  GPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDENRHVGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRG+TELSLTTGNAGER AC
Sbjct: 86  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGQTELSLTTGNAGERIAC 145

Query: 142 ----GVIGLQE 149
               GVIGLQE
Sbjct: 146 VFLAGVIGLQE 156

[Close]

BLAST of Sed0017146 vs. TAIR 10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 207.6 bits (527), Expect = 6.8e-54
Identity = 95/126 (75.40%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           G TTV+G +SGL  GLHGFHVHALGDTTNGC STGPHFNP+GK HGAP+D NRH GDLGN
Sbjct: 26  GVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           +  GDDGTATF+I D QI L GPNS++GR++VVHADPDDLG+G  ELSL TGNAG R AC
Sbjct: 86  ITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVAC 145

Query: 142 GVIGLQ 148
           G+IGLQ
Sbjct: 146 GIIGLQ 151

[Close]

BLAST of Sed0017146 vs. TAIR 10
Match: AT1G08830.2 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 207.6 bits (527), Expect = 6.8e-54
Identity = 95/126 (75.40%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           G TTV+G +SGL  GLHGFHVHALGDTTNGC STGPHFNP+GK HGAP+D NRH GDLGN
Sbjct: 26  GVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGN 85

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           +  GDDGTATF+I D QI L GPNS++GR++VVHADPDDLG+G  ELSL TGNAG R AC
Sbjct: 86  ITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVAC 145

Query: 142 GVIGLQ 148
           G+IGLQ
Sbjct: 146 GIIGLQ 151

[Close]

BLAST of Sed0017146 vs. TAIR 10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2 )

HSP 1 Score: 171.4 bits (433), Expect = 5.4e-43
Identity = 83/125 (66.40%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           GPTTV   I+GL  G HGFH+H  GDTTNGC STGPHFNP    HGAP+D+ RH GDLGN
Sbjct: 89  GPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGN 148

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           + A  DG A  +I+D QI L GPNSV+GR+ VVH   DDLG+G  ELSLTTGNAG R AC
Sbjct: 149 INANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLAC 208

Query: 142 GVIGL 147
           GVIGL
Sbjct: 209 GVIGL 213

[Close]

BLAST of Sed0017146 vs. TAIR 10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 171.4 bits (433), Expect = 5.4e-43
Identity = 79/126 (62.70%), Postives = 95/126 (75.40%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           G T VTG ISGL  G HGFH+H+ GDTTNGC STGPHFNP  + HG P+++ RH GDLGN
Sbjct: 32  GTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPPNEEERHAGDLGN 91

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERTAC 141
           ++AG +G A   I DK I L G  S+LGR++VVHADPDDLG+G  +LS +TGNAG R  C
Sbjct: 92  ILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGGHKLSKSTGNAGSRVGC 151

Query: 142 GVIGLQ 148
           G+IGLQ
Sbjct: 152 GIIGLQ 157

[Close]

BLAST of Sed0017146 vs. TAIR 10
Match: AT5G18100.2 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-34
Identity = 65/103 (63.11%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 22  GPTTVTGNISGLMAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDQNRHVGDLGN 81
           G T VTG ISGL  G HGFH+H+ GDTTNGC STGPHFNP  + HG P+++ RH GDLGN
Sbjct: 32  GTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPPNEEERHAGDLGN 91

Query: 82  LVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRG 125
           ++AG +G A   I DK I L G  S+LGR++VVHADPDDLG+G
Sbjct: 92  ILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKG 134

The following BLAST results are available for this feature:

BLAST of Sed0017146 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022999148.1	3.4e-63	95.28	superoxide dismutase [Cu-Zn] 1-like isoform X2 [Cucurbita maxima]	[more]
KAG7030279.1	5.8e-63	95.28	Superoxide dismutase [Cu-Zn] 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022150819.1	3.8e-62	92.91	superoxide dismutase [Cu-Zn] 1-like isoform X2 [Momordica charantia] >XP_0221508...	[more]
XP_022946180.1	4.9e-62	94.49	superoxide dismutase [Cu-Zn]-like isoform X2 [Cucurbita moschata]	[more]
KAG6599281.1	4.9e-62	94.49	Superoxide dismutase [Cu-Zn] 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0017146 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93258	2.7e-55	78.57	Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC...	[more]
P22233	3.0e-54	76.98	Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea OX=3562 GN=SODCC PE=2 SV=1	[more]
Q42611	8.7e-54	76.98	Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea OX=3707 GN=SODCC1 PE=2 SV=3	[more]
P09678	1.9e-53	76.19	Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata OX=3716 GN=SODCC...	[more]
Q8L5E0	2.5e-53	74.60	Superoxide dismutase [Cu-Zn] 2 OS=Olea europaea OX=4146 GN=OLE5 PE=1 SV=2	[more]

BLAST of Sed0017146 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KIS8	1.6e-63	95.28	Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV...	[more]
A0A6J1D9J5	1.8e-62	92.91	Superoxide dismutase [Cu-Zn] OS=Momordica charantia OX=3673 GN=LOC111018871 PE=3...	[more]
A0A6J1G334	2.4e-62	94.49	Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 ...	[more]
A0A0A0LIH2	6.9e-62	92.91	Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=Csa_2G013250 PE=3 SV=...	[more]
A0A6J1KC95	9.0e-62	92.37	Superoxide dismutase OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1	[more]

BLAST of Sed0017146 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08830.1	6.8e-54	75.40	copper/zinc superoxide dismutase 1	[more]
AT1G08830.2	6.8e-54	75.40	copper/zinc superoxide dismutase 1	[more]
AT2G28190.1	5.4e-43	66.40	copper/zinc superoxide dismutase 2	[more]
AT5G18100.1	5.4e-43	62.70	copper/zinc superoxide dismutase 3	[more]
AT5G18100.2	2.1e-34	63.11	copper/zinc superoxide dismutase 3	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 75..84 score: 70.93 coord: 94..116 score: 57.24 coord: 119..145 score: 68.19 coord: 39..61 score: 78.93
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 23..144 e-value: 5.3E-45 score: 153.0
IPR001424	Superoxide dismutase, copper/zinc binding domain	CDD	cd00305	Cu-Zn_Superoxide_Dismutase	coord: 22..141 e-value: 1.35983E-56 score: 171.675
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	GENE3D	2.60.40.200	Superoxide dismutase, copper/zinc binding domain	coord: 13..148 e-value: 2.4E-57 score: 195.4
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	SUPERFAMILY	49329	Cu,Zn superoxide dismutase-like	coord: 23..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..75
None	No IPR available	PANTHER	PTHR10003:SF84	SUPEROXIDE DISMUTASE [CU-ZN]	coord: 21..148
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 21..148
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 39..49
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00332	SOD_CU_ZN_2	coord: 133..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017146.1	Sed0017146.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0006801	superoxide metabolic process
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004784	superoxide dismutase activity
molecular_function	GO:0046872	metal ion binding