Sed0017088 (gene) Chayote v1

Overview
NameSed0017088
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG01: 3726701 .. 3727667 (+)
RNA-Seq ExpressionSed0017088
SyntenySed0017088
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGGAAAAGCGACATTGCTTATCTCACTCCACGCGGCGCAACCAACGCTTCTCATGTGATCTCTCTCTCTCTCTCTCTCTATAAAATCACTTCCCATTCATTTTTCGTTTTCTCAAATCCTTCATCCAATTTCTTAAAAACGAAGAAACAGAGAGAGATTCATTCCGTGAATATATAATCCATCGCATTCATCCATGGGGAACTGTTTGAGAAGCAGCAGAGTAACGGCGCAAGATCCAGAGATTTATTCGCCGGCGTCGGAACCGGAGAAAGTAGAGGCGGAGGATCGTAAACCGGCCGCCAGATCTGCAATGGCGAAGCCGAGAACTACCGGTGCTAAGAAGGTAGTGAGGTTTAACCTTCAAGAACATGATCATGAAAATCCGGCCGGCGGCGACGGAGAAGCTGAGATCGGCGATACCGGCGGAGTGTTGAGGATTAAAGTAGTGGTATCTCAGAAAGAATTGAAGCAGATTTTGAAGGATAGAGAGAACAATCCGTGCAGCGTTGAGGAATTGATCGCTGAATTGAAGGTGAAAGCCAGGACCAGTACGGTTTCAGATGCTATTCAACGGCCGAGATCGCCTCCCAAAAGCACTTTTCCTGATTCTGAAGATCTTCAATAAAACCCTCTTTCTCTCACCTTTCTTAGCAAAGATTTGAAAATATTGCTGCGGTGTGTTATTTGATCACCGAAACTTCCCCAAATTATCAATTTCGTGTTATCATTTGGATGGAAATTAGAATTAAGTTATTTCGAAACTCGTTTGAAAAACTAATTGATTGAATCAAATATTATCTTTTATTTCTACATTTTATTGAATGATAAACATTATTTCTAAGTTTATATTGAATCATAAGTCTAAATTTTAAGTTTTTATCTATGTGTGTTCTTATGTTCAAATTGTATGTGTGTTTTTGTAATCATTTATACATATTTGAATTAATTAGTGTATGCTTTTTTC

mRNA sequence

AAAAGGAAAAGCGACATTGCTTATCTCACTCCACGCGGCGCAACCAACGCTTCTCATGTGATCTCTCTCTCTCTCTCTCTCTATAAAATCACTTCCCATTCATTTTTCGTTTTCTCAAATCCTTCATCCAATTTCTTAAAAACGAAGAAACAGAGAGAGATTCATTCCGTGAATATATAATCCATCGCATTCATCCATGGGGAACTGTTTGAGAAGCAGCAGAGTAACGGCGCAAGATCCAGAGATTTATTCGCCGGCGTCGGAACCGGAGAAAGTAGAGGCGGAGGATCGTAAACCGGCCGCCAGATCTGCAATGGCGAAGCCGAGAACTACCGGTGCTAAGAAGGTAGTGAGGTTTAACCTTCAAGAACATGATCATGAAAATCCGGCCGGCGGCGACGGAGAAGCTGAGATCGGCGATACCGGCGGAGTGTTGAGGATTAAAGTAGTGGTATCTCAGAAAGAATTGAAGCAGATTTTGAAGGATAGAGAGAACAATCCGTGCAGCGTTGAGGAATTGATCGCTGAATTGAAGGTGAAAGCCAGGACCAGTACGGTTTCAGATGCTATTCAACGGCCGAGATCGCCTCCCAAAAGCACTTTTCCTGATTCTGAAGATCTTCAATAAAACCCTCTTTCTCTCACCTTTCTTAGCAAAGATTTGAAAATATTGCTGCGGTGTGTTATTTGATCACCGAAACTTCCCCAAATTATCAATTTCGTGTTATCATTTGGATGGAAATTAGAATTAAGTTATTTCGAAACTCGTTTGAAAAACTAATTGATTGAATCAAATATTATCTTTTATTTCTACATTTTATTGAATGATAAACATTATTTCTAAGTTTATATTGAATCATAAGTCTAAATTTTAAGTTTTTATCTATGTGTGTTCTTATGTTCAAATTGTATGTGTGTTTTTGTAATCATTTATACATATTTGAATTAATTAGTGTATGCTTTTTTC

Coding sequence (CDS)

ATGGGGAACTGTTTGAGAAGCAGCAGAGTAACGGCGCAAGATCCAGAGATTTATTCGCCGGCGTCGGAACCGGAGAAAGTAGAGGCGGAGGATCGTAAACCGGCCGCCAGATCTGCAATGGCGAAGCCGAGAACTACCGGTGCTAAGAAGGTAGTGAGGTTTAACCTTCAAGAACATGATCATGAAAATCCGGCCGGCGGCGACGGAGAAGCTGAGATCGGCGATACCGGCGGAGTGTTGAGGATTAAAGTAGTGGTATCTCAGAAAGAATTGAAGCAGATTTTGAAGGATAGAGAGAACAATCCGTGCAGCGTTGAGGAATTGATCGCTGAATTGAAGGTGAAAGCCAGGACCAGTACGGTTTCAGATGCTATTCAACGGCCGAGATCGCCTCCCAAAAGCACTTTTCCTGATTCTGAAGATCTTCAATAA

Protein sequence

MGNCLRSSRVTAQDPEIYSPASEPEKVEAEDRKPAARSAMAKPRTTGAKKVVRFNLQEHDHENPAGGDGEAEIGDTGGVLRIKVVVSQKELKQILKDRENNPCSVEELIAELKVKARTSTVSDAIQRPRSPPKSTFPDSEDLQ
Homology
BLAST of Sed0017088 vs. NCBI nr
Match: XP_038902397.1 (uncharacterized protein LOC120089037 [Benincasa hispida])

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-20
Identity = 74/128 (57.81%), Postives = 86/128 (67.19%), Query Frame = 0

Query: 3   NCLRSSRVTAQD-PEIYSPASEPEKVEAEDRKPAARSAMAKPRTTGA------KKVVRFN 62
           NC +S++V AQD PE   P  E +KVE    KP   SAMAKP+T  A      KKVVRF 
Sbjct: 4   NCFKSNKVMAQDEPEDLLPPIEAKKVE---EKPRPGSAMAKPKTAEARTGGASKKVVRFK 63

Query: 63  LQEHDHENPAGGDGEAEIGDTGGVLRIKVVVSQKELKQILKDRENNPCSVEELIAELKVK 122
           LQE + +N   GD        GGVLRIKVV+SQKELKQ+LKDRENN C++EELI ELKVK
Sbjct: 64  LQEEEEKN--SGD--------GGVLRIKVVMSQKELKQMLKDRENNSCTLEELITELKVK 117

Query: 123 ARTSTVSD 124
            RT T+SD
Sbjct: 124 GRT-TISD 117

BLAST of Sed0017088 vs. NCBI nr
Match: KAG6570883.1 (hypothetical protein SDJN03_29798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-20
Identity = 78/137 (56.93%), Postives = 89/137 (64.96%), Query Frame = 0

Query: 1   MGN-CLRSSRVTAQDPEIY----SPASEPEKVEAEDRKPAARSAMAKPRT-------TGA 60
           MGN C +S++V AQD        SP  E +KVE    KP A SAMAKP+T          
Sbjct: 1   MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVE---EKPVAGSAMAKPKTAEERSGAAAG 60

Query: 61  KKVVRFNLQEHDHENPAGGDGEAEIGDTGGVLRIKVVVSQKELKQILKDRENNPCSVEEL 120
           KKVVRF LQE D EN  G  G+   GD  GVLRIKVV+SQ+ELKQILK+ EN+  S+EEL
Sbjct: 61  KKVVRFKLQEED-ENSGGSGGD---GDRAGVLRIKVVMSQRELKQILKENENSSRSLEEL 120

Query: 121 IAELKVKARTSTVSDAI 126
           IAE KVK RT TVSDAI
Sbjct: 121 IAEFKVKGRT-TVSDAI 129

BLAST of Sed0017088 vs. NCBI nr
Match: TYK24218.1 (hypothetical protein E5676_scaffold27G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-19
Identity = 75/135 (55.56%), Postives = 91/135 (67.41%), Query Frame = 0

Query: 1   MGN-CLRSSRVTAQDPEIYS----PASEPEKVEAEDRKPAARSAMAKPR--TTGA--KKV 60
           MGN C R+++V AQD    +       E EKVE +  +P   SAMAKP+  T GA  KKV
Sbjct: 1   MGNICFRTNKVMAQDDSYDNLPPDQFIEAEKVEEQPLRPG--SAMAKPKNGTGGAAGKKV 60

Query: 61  VRFNLQEHDHENPAGGDGEAEIGDTG-GVLRIKVVVSQKELKQILKDRENNPCSVEELIA 120
           VRFNLQE + +      G+    D+G GVLRIKVV+SQKELK+ILK+RENN CS+EELI 
Sbjct: 61  VRFNLQEEEEDQEDRNSGD----DSGAGVLRIKVVISQKELKEILKNRENNSCSLEELIE 120

Query: 121 ELKVKARTSTVSDAI 126
           ELKVK R +TVSD I
Sbjct: 121 ELKVKGRATTVSDEI 129

BLAST of Sed0017088 vs. NCBI nr
Match: KGN63254.1 (hypothetical protein Csa_022493 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-18
Identity = 77/150 (51.33%), Postives = 94/150 (62.67%), Query Frame = 0

Query: 1   MGN-CLRSSRVTAQDP--EIYSP--ASEPEKVEAEDRKPAARSAMAKPR--TTGA--KKV 60
           MGN C +S++V AQD   + + P    EP+KV+   ++P   SAMAKP+  T GA  KKV
Sbjct: 1   MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQ---QQPLPGSAMAKPKNGTGGAAGKKV 60

Query: 61  VRFNLQEHDHENPAGGDGEAEIGDTG-GVLRIKVVVSQKELKQILKDRENNPCSVEELIA 120
           VRFNLQE + +           GD+G GVLRIKVV+SQKELKQILK RENN CS+EELI 
Sbjct: 61  VRFNLQEEEKDEEGRNS-----GDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIE 120

Query: 121 ELKVKARTSTVSDAIQRPRSPPKSTFPDSE 141
           ELKVK R +TVS        P     P+ E
Sbjct: 121 ELKVKGRATTVSADETGSWKPALECIPEGE 142

BLAST of Sed0017088 vs. NCBI nr
Match: XP_022140639.1 (uncharacterized protein LOC111011249 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 5.5e-18
Identity = 72/133 (54.14%), Postives = 87/133 (65.41%), Query Frame = 0

Query: 1   MGNCLRSSRVTAQDPEIYSPASEPEKVEAE---DRKPAARSAMAKPRTTGA------KKV 60
           MGNCLR++RV AQD E  SP+      E     + KPAA SA+A+P+T  A      KKV
Sbjct: 43  MGNCLRNNRVMAQD-EACSPSPNSSLTETNYKVEDKPAAGSALARPKTEEARIAARRKKV 102

Query: 61  VRFNLQEHDHENPAGGDGEAEIGDTGGVLRIKVVVSQKELKQILKDRENNPCSVEELIAE 120
           VRF  Q+ + E   GG         GGVLRIKVVVSQKELKQILKDRE+N  ++EEL+AE
Sbjct: 103 VRF--QQREDEISGGG---------GGVLRIKVVVSQKELKQILKDRESNSSTLEELLAE 161

Query: 121 LKVKARTSTVSDA 125
           LK+K R  T+SDA
Sbjct: 163 LKMKGR--TISDA 161

BLAST of Sed0017088 vs. ExPASy TrEMBL
Match: A0A5D3DKZ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00200 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 8.2e-20
Identity = 75/135 (55.56%), Postives = 91/135 (67.41%), Query Frame = 0

Query: 1   MGN-CLRSSRVTAQDPEIYS----PASEPEKVEAEDRKPAARSAMAKPR--TTGA--KKV 60
           MGN C R+++V AQD    +       E EKVE +  +P   SAMAKP+  T GA  KKV
Sbjct: 1   MGNICFRTNKVMAQDDSYDNLPPDQFIEAEKVEEQPLRPG--SAMAKPKNGTGGAAGKKV 60

Query: 61  VRFNLQEHDHENPAGGDGEAEIGDTG-GVLRIKVVVSQKELKQILKDRENNPCSVEELIA 120
           VRFNLQE + +      G+    D+G GVLRIKVV+SQKELK+ILK+RENN CS+EELI 
Sbjct: 61  VRFNLQEEEEDQEDRNSGD----DSGAGVLRIKVVISQKELKEILKNRENNSCSLEELIE 120

Query: 121 ELKVKARTSTVSDAI 126
           ELKVK R +TVSD I
Sbjct: 121 ELKVKGRATTVSDEI 129

BLAST of Sed0017088 vs. ExPASy TrEMBL
Match: A0A0A0LQE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418890 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-18
Identity = 77/150 (51.33%), Postives = 94/150 (62.67%), Query Frame = 0

Query: 1   MGN-CLRSSRVTAQDP--EIYSP--ASEPEKVEAEDRKPAARSAMAKPR--TTGA--KKV 60
           MGN C +S++V AQD   + + P    EP+KV+   ++P   SAMAKP+  T GA  KKV
Sbjct: 1   MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQ---QQPLPGSAMAKPKNGTGGAAGKKV 60

Query: 61  VRFNLQEHDHENPAGGDGEAEIGDTG-GVLRIKVVVSQKELKQILKDRENNPCSVEELIA 120
           VRFNLQE + +           GD+G GVLRIKVV+SQKELKQILK RENN CS+EELI 
Sbjct: 61  VRFNLQEEEKDEEGRNS-----GDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIE 120

Query: 121 ELKVKARTSTVSDAIQRPRSPPKSTFPDSE 141
           ELKVK R +TVS        P     P+ E
Sbjct: 121 ELKVKGRATTVSADETGSWKPALECIPEGE 142

BLAST of Sed0017088 vs. ExPASy TrEMBL
Match: A0A6J1CG85 (uncharacterized protein LOC111011249 OS=Momordica charantia OX=3673 GN=LOC111011249 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 72/133 (54.14%), Postives = 87/133 (65.41%), Query Frame = 0

Query: 1   MGNCLRSSRVTAQDPEIYSPASEPEKVEAE---DRKPAARSAMAKPRTTGA------KKV 60
           MGNCLR++RV AQD E  SP+      E     + KPAA SA+A+P+T  A      KKV
Sbjct: 43  MGNCLRNNRVMAQD-EACSPSPNSSLTETNYKVEDKPAAGSALARPKTEEARIAARRKKV 102

Query: 61  VRFNLQEHDHENPAGGDGEAEIGDTGGVLRIKVVVSQKELKQILKDRENNPCSVEELIAE 120
           VRF  Q+ + E   GG         GGVLRIKVVVSQKELKQILKDRE+N  ++EEL+AE
Sbjct: 103 VRF--QQREDEISGGG---------GGVLRIKVVVSQKELKQILKDRESNSSTLEELLAE 161

Query: 121 LKVKARTSTVSDA 125
           LK+K R  T+SDA
Sbjct: 163 LKMKGR--TISDA 161

BLAST of Sed0017088 vs. ExPASy TrEMBL
Match: A0A6A4P389 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr19g0135851 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 50/129 (38.76%), Postives = 76/129 (58.91%), Query Frame = 0

Query: 1   MGNCLRSSRVTAQDPEIYSPASEP------EKVEAEDRKPAARSAMAKPRTTGAKKVVRF 60
           MGNCLR+++++AQD E Y    E       EKV+A        S   +  T   KK VRF
Sbjct: 1   MGNCLRNNKISAQDLENYETQVESCDEAKVEKVKASSLSNLKESVQKEQST---KKKVRF 60

Query: 61  NLQEHDHENPAGGDGEAEIGDTGGVLRIKVVVSQKELKQIL--KDRENNPCSVEELIAEL 120
           N+Q  D ++  G D  ++     GV+RIKVV+++KELK++L  K+ E+N  S+++L++ L
Sbjct: 61  NVQNDDDDDDEGEDRGSDDNSRNGVVRIKVVMTRKELKRVLSCKNEEHN-TSLDQLLSAL 120

Query: 121 KVKARTSTV 122
           K + R S V
Sbjct: 121 KFRGRVSKV 125

BLAST of Sed0017088 vs. ExPASy TrEMBL
Match: A0A6A5NC21 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00028963 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.0e-09
Identity = 49/127 (38.58%), Postives = 75/127 (59.06%), Query Frame = 0

Query: 1   MGNCLRSSRVTAQDPEIYSPASEP------EKVEAEDRKPAARSAMAKPRTTGAKKVVRF 60
           MGNCLR+++++AQD E Y    E       EKV+A        S   +  T   KK VRF
Sbjct: 1   MGNCLRNNKISAQDLENYETQVESCDEAKVEKVKASSLSNLKESVQKEQST---KKKVRF 60

Query: 61  NLQEHDHENPAGGDGEAEIGDTGGVLRIKVVVSQKELKQIL--KDRENNPCSVEELIAEL 120
           N+Q  D ++  G D  ++     GV+RIKVV+++KELK++L  K+ E+N  S+++L++ L
Sbjct: 61  NVQNDDDDDDEGEDRGSDDNSRNGVVRIKVVMTRKELKRVLSCKNEEHN-TSLDQLLSAL 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902397.12.6e-2057.81uncharacterized protein LOC120089037 [Benincasa hispida][more]
KAG6570883.12.6e-2056.93hypothetical protein SDJN03_29798, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK24218.11.7e-1955.56hypothetical protein E5676_scaffold27G00200 [Cucumis melo var. makuwa][more]
KGN63254.13.2e-1851.33hypothetical protein Csa_022493 [Cucumis sativus][more]
XP_022140639.15.5e-1854.14uncharacterized protein LOC111011249 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DKZ88.2e-2055.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LQE91.6e-1851.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418890 PE=4 SV=1[more]
A0A6J1CG852.7e-1854.14uncharacterized protein LOC111011249 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6A4P3892.9e-0938.76Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr19g0135851 PE=4 SV=1[more]
A0A6A5NC215.0e-0938.58Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00028963 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..143
NoneNo IPR availablePANTHERPTHR33148PLASTID MOVEMENT IMPAIRED PROTEIN-RELATEDcoord: 1..121
NoneNo IPR availablePANTHERPTHR33148:SF55OS01G0219300 PROTEINcoord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0017088.1Sed0017088.1mRNA