Sed0017079 (gene) Chayote v1

Overview


Name	Sed0017079
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA-directed RNA polymerase
Location	LG09: 35339574 .. 35341669 (-)
RNA-Seq Expression	Sed0017079
Synteny	Sed0017079

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATGGTTTAGATCTCTCCTCGTTTCGCCATTGAAGAAGCTTTGGGATCGTCTTCACTCTCCCCGTAGAAATCGTAAGCGTCCTATCTCTTTTCGATTTCTCGACAACCAATCTATCCGGTAATTAAGGGTCGGGTTAGAATTATTTCTATGAATGTGACTAAATATGTGATTTAATCTTTCCTTTATTCTGATTTAGTTTTATTGCTTAAATTGTTTTAGTTTAGTCATGGCCTTTAAACATCATTTTTTCAGTAGAGTTTAAATGTGGGTGATGGTTATATTAGATGACATGATATTTAGAGGAAGAAATCAAAAGGATCGGTAGCGTGATGGTTTCGTTGTTTTCTTGAAATCTAATTCACACTATGGTCAAGTTTGGTCCATGAAATCGATATTTGACTTTCATTTATTATTAGGTTAGGACTCGACATATATCTTCTTTGTGGAAGAATATCATTGACAATGAAGGGAGGGAAACAAATTTTATTTTTACTTCAAATTATCTCTAAATTGTGTGTTTTTTTTTAATTCGACAACAATTGAAGATGGATCACCTATTATTGATTATTGATCAGTTATACAAGAATATTGATTATTGATTTTTACTTATTATTGATTATTGATCAGTTATACAAGAATATCACTGGAGCTATTTGCTCTTTTTGATAATTTCTAGAAACTTTGATTGCATTCTCTTCTCTTGAGTTACCAAGTCCTACAAAATATTTTATCAATTCACTATTCAAAAATTTTATCAATTCAATAAATATTAGTAAGCTCGAACAATTGTTTTCAAAAAAAAAAAAAAGTAAGCTCGGACAAAATATGATAGAATTATAATATGAACTAAAAATATCCGAATAATAAGACCAAATAAATTATTTATTTAGCTTTCATCTTTTAATGGGTATAATTTTGAGTTTAATAATTCAAGGGCAAACCTAGAGAAAAATATTAATTATATTTCATCTCATATACGTATTTTTAAATTTTAATACAAATGAATGGAGATGTCCATGTGGCCGGCTGAAGAATGATTTTCCAATTCCCATCAGTAACCAAAATCAGTCCCATCATTTTTTCCACATGTAATTTTCTTCTCATTTTATATATATTTTTTAAATAATAATCTAAAATAATTAATTTTCTTTTAAAATATCTATTAACTTTCAATTATATCCTTAATTATAAGGAAATATATTCATTTCAAAAAATAATTTCACTAACAAATATTTTTTATCTAAAAATTAAAAAATATAATGGAAGAAAAGTAATTTTTAAAAAAATTGTAAATGTGGCGAGAATCAAGATCAAATGAGAATAGGGAATACATTTTATGTCGGTGAGCTGGCAAAGAAGATTTTTTGTCCCGTTTAGAGCACATTCCTGCAGAAAAAAATGAACATCTCTACAAATAAAAGTGCAATATACTCTTTTTTTTTCTTTTTTTGTTCATTAAATAGCATGGTATTTTATACTGAAGTTGGGCGGGATAGTCCAATTTCACAAAATAATTGCTGATAGACAAATTTGAATTTTTTTCATCCATAATCAAATATACGATATAATTAATATTCACCATGATATAATTTAGGGTATAAATATAATATTTTGTATTATTAATACATTTTTATATATGTATTATTAATACAATATTATATATTATTAGTACAATATTGTATATTAATACAATATTATAGATTAATTATAGCATACAATTTGCGTGACTTTAATTATTAAATTTTTTTTTTTGCTTTATAAATATTTTTTCAATTTGACCCACTTCTAAAATTATCCTTATTTTATATTAAATTTAATTCATGATAAAAAAAATTTATAAATTCTAGTAGACATTTTTCTAAGGTGAGATTCTCAGCACAATTATCCTTCACGAAACGTCTCTTTACGTCTCCATTTTTTAAGATTTAATATCCATTGTACAAGACTAATTTTTACTTTTCTTTTGGGGACGCAGGCAAAGGCATCTACATTCTGTACAAGGATGTGAAGTCTTGCCCATGTGAAGATGTGCAAATGCTTTGGTCCATCCTCGTCGAGTCGAGTTCTCCTAATCCGCCATCGCCTCTGTGA

mRNA sequence

ATGGGATGGTTTAGATCTCTCCTCGTTTCGCCATTGAAGAAGCTTTGGGATCGTCTTCACTCTCCCCGTAGAAATCGCAAAGGCATCTACATTCTGTACAAGGATGTGAAGTCTTGCCCATGTGAAGATGTGCAAATGCTTTGGTCCATCCTCGTCGAGTCGAGTTCTCCTAATCCGCCATCGCCTCTGTGA

Coding sequence (CDS)

ATGGGATGGTTTAGATCTCTCCTCGTTTCGCCATTGAAGAAGCTTTGGGATCGTCTTCACTCTCCCCGTAGAAATCGCAAAGGCATCTACATTCTGTACAAGGATGTGAAGTCTTGCCCATGTGAAGATGTGCAAATGCTTTGGTCCATCCTCGTCGAGTCGAGTTCTCCTAATCCGCCATCGCCTCTGTGA

Protein sequence

MGWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVESSSPNPPSPL

Homology

[Close]

BLAST of Sed0017079 vs. NCBI nr
Match: KGN44804.1 (hypothetical protein Csa_015628 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MGWFRSLLVSPLKKLWDRLHSPRR-NRKGIYILYKDVKSCPCEDVQMLWSILVESSSPNP 60
          MGWF+S L+SP KKLWDRLHSP + NRKGIYILYKDVKSCPCEDVQMLWSILV+S+SP P
Sbjct: 1  MGWFKSFLISPFKKLWDRLHSPHKSNRKGIYILYKDVKSCPCEDVQMLWSILVQSASP-P 60

Query: 61 PSPL 64
           SPL
Sbjct: 61 NSPL 63

[Close]

BLAST of Sed0017079 vs. NCBI nr
Match: KAG6575915.1 (hypothetical protein SDJN03_26554, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 58/100 (58.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 1   MGWFRSLLVSPLKKLWDRLHSPRRNR---------------------------------- 60
           MGWFRSLLVSPLKKLW RLHSP RNR                                  
Sbjct: 1   MGWFRSLLVSPLKKLWVRLHSPHRNRNHSNSIIIIISLLFGRNYHRPPPSNSDEVLLFLD 60

Query: 61  --KGIYILYKDVKSCPCEDVQMLWSILVE--SSSPNPPSP 63
             KGIYILYKDVKSCPCEDVQMLWSILVE  SSS +PPSP
Sbjct: 61  VGKGIYILYKDVKSCPCEDVQMLWSILVEAGSSSSHPPSP 100

[Close]

BLAST of Sed0017079 vs. NCBI nr
Match: RXI05532.1 (hypothetical protein DVH24_017574 [Malus domestica])

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 1  MGWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVESSS-PNP 60
          MGW RS LVSPLKKLWDRLHS  R RKGIYILYKDV+SCPCEDV +LWSILV+S S P P
Sbjct: 1  MGWLRS-LVSPLKKLWDRLHSSHRKRKGIYILYKDVRSCPCEDVHVLWSILVDSQSHPTP 60

Query: 61 PS 62
          P+
Sbjct: 61 PA 61

[Close]

BLAST of Sed0017079 vs. NCBI nr
Match: GAY40670.1 (hypothetical protein CUMW_053760 [Citrus unshiu])

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-18
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 2  GWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVES 55
          GW  SL+VSPLKKLWDRLHS  R R+G+YILYKDVKSCPCEDVQ+LWSILVES
Sbjct: 3  GWLHSLVVSPLKKLWDRLHSSHRRRRGLYILYKDVKSCPCEDVQVLWSILVES 55

[Close]

BLAST of Sed0017079 vs. NCBI nr
Match: KDO68697.1 (hypothetical protein CISIN_1g035399mg [Citrus sinensis])

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-18
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 2  GWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVES 55
          GW  SL+VSPLKKLWDRLHS  R R+G+YILYKDVKSCPCEDVQ+LWSILVES
Sbjct: 3  GWLHSLVVSPLKKLWDRLHSSHRRRRGLYILYKDVKSCPCEDVQVLWSILVES 55

[Close]

BLAST of Sed0017079 vs. ExPASy TrEMBL
Match: A0A0A0K7C3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G388370 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.6e-22
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MGWFRSLLVSPLKKLWDRLHSPRR-NRKGIYILYKDVKSCPCEDVQMLWSILVESSSPNP 60
          MGWF+S L+SP KKLWDRLHSP + NRKGIYILYKDVKSCPCEDVQMLWSILV+S+SP P
Sbjct: 1  MGWFKSFLISPFKKLWDRLHSPHKSNRKGIYILYKDVKSCPCEDVQMLWSILVQSASP-P 60

Query: 61 PSPL 64
           SPL
Sbjct: 61 NSPL 63

[Close]

BLAST of Sed0017079 vs. ExPASy TrEMBL
Match: A0A498KIY5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_017574 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.9e-19
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 1  MGWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVESSS-PNP 60
          MGW RS LVSPLKKLWDRLHS  R RKGIYILYKDV+SCPCEDV +LWSILV+S S P P
Sbjct: 1  MGWLRS-LVSPLKKLWDRLHSSHRKRKGIYILYKDVRSCPCEDVHVLWSILVDSQSHPTP 60

Query: 61 PS 62
          P+
Sbjct: 61 PA 61

[Close]

BLAST of Sed0017079 vs. ExPASy TrEMBL
Match: A0A067FZ56 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035399mg PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 2  GWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVES 55
          GW  SL+VSPLKKLWDRLHS  R R+G+YILYKDVKSCPCEDVQ+LWSILVES
Sbjct: 3  GWLHSLVVSPLKKLWDRLHSSHRRRRGLYILYKDVKSCPCEDVQVLWSILVES 55

[Close]

BLAST of Sed0017079 vs. ExPASy TrEMBL
Match: A0A2H5NKH5 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_053760 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 2  GWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVES 55
          GW  SL+VSPLKKLWDRLHS  R R+G+YILYKDVKSCPCEDVQ+LWSILVES
Sbjct: 3  GWLHSLVVSPLKKLWDRLHSSHRRRRGLYILYKDVKSCPCEDVQVLWSILVES 55

[Close]

BLAST of Sed0017079 vs. ExPASy TrEMBL
Match: W9QVP0 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025085 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1  MGWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVESSS 57
          MGW RS LVSPLKK+WDRLHS  R R+GIYILYKDVKSCPCEDVQ+LWSILVES +
Sbjct: 1  MGWLRS-LVSPLKKIWDRLHSNHRKRRGIYILYKDVKSCPCEDVQVLWSILVESGT 55

The following BLAST results are available for this feature:

BLAST of Sed0017079 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44804.1	1.4e-21	82.81	hypothetical protein Csa_015628 [Cucumis sativus]	[more]
KAG6575915.1	1.1e-18	58.00	hypothetical protein SDJN03_26554, partial [Cucurbita argyrosperma subsp. sorori...	[more]
RXI05532.1	1.4e-18	79.03	hypothetical protein DVH24_017574 [Malus domestica]	[more]
GAY40670.1	2.4e-18	83.02	hypothetical protein CUMW_053760 [Citrus unshiu]	[more]
KDO68697.1	2.4e-18	83.02	hypothetical protein CISIN_1g035399mg [Citrus sinensis]	[more]

BLAST of Sed0017079 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0017079 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7C3	6.6e-22	82.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G388370 PE=4 SV=1	[more]
A0A498KIY5	6.9e-19	79.03	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_017574 PE=4 SV=1	[more]
A0A067FZ56	1.2e-18	83.02	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035399mg PE=4 SV=1	[more]
A0A2H5NKH5	1.2e-18	83.02	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_053760 PE=4 SV=1	[more]
W9QVP0	2.6e-18	82.14	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025085 PE=4 SV=1	[more]

BLAST of Sed0017079 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181:SF30	OS07G0204400 PROTEIN	coord: 1..57
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017079.1	Sed0017079.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
molecular_function	GO:0003746	translation elongation factor activity